Wall clock time and date at job start Fri Apr 10 2020 14:48:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47100 * 2 1 4 4 N 1.46900 * 109.47231 * 179.97438 * 3 2 1 5 5 C 1.46911 * 111.00096 * 66.04516 * 4 3 2 6 6 C 1.46906 * 111.00161 * 189.99790 * 4 3 2 7 7 C 1.52996 * 109.46775 * 75.61752 * 6 4 3 8 8 H 1.09000 * 110.88874 * 308.19448 * 7 6 4 9 9 C 1.55164 * 111.00044 * 184.32042 * 7 6 4 10 10 C 1.54324 * 102.93928 * 206.38567 * 9 7 6 11 11 N 1.47028 * 107.27386 * 22.19240 * 10 9 7 12 12 C 1.34775 * 125.64918 * 181.02239 * 11 10 9 13 13 O 1.21580 * 119.99826 * 180.02562 * 12 11 10 14 14 N 1.34776 * 119.99827 * 0.02588 * 12 11 10 15 15 C 1.46499 * 119.99853 * 179.97438 * 14 12 11 16 16 C 1.50698 * 109.47251 * 179.97438 * 15 14 12 17 17 O 1.21292 * 119.99918 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99997 * 179.97438 * 16 15 14 19 19 C 1.37099 * 119.99945 * 179.97438 * 18 16 15 20 20 H 1.08007 * 120.00290 * 0.02562 * 19 18 16 21 21 C 1.38953 * 120.00171 * 180.02562 * 19 18 16 22 22 N 1.31411 * 119.99542 * 359.72648 * 21 19 18 23 23 Si 1.86802 * 120.00146 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46929 * 179.72601 * 23 21 19 25 25 H 1.48498 * 109.46984 * 299.72541 * 23 21 19 26 26 H 1.48497 * 109.46993 * 59.72098 * 23 21 19 27 27 C 1.47428 * 108.70041 * 1.28717 * 11 10 9 28 28 H 1.08998 * 109.47486 * 300.00440 * 1 2 3 29 29 H 1.09004 * 109.47479 * 60.00266 * 1 2 3 30 30 H 1.08997 * 109.47453 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47307 * 240.00069 * 2 1 3 32 32 H 1.09004 * 109.47479 * 119.99734 * 2 1 3 33 33 H 1.08993 * 109.47629 * 59.99807 * 3 2 1 34 34 H 1.09004 * 109.46983 * 299.99698 * 3 2 1 35 35 H 1.09000 * 109.47005 * 187.89492 * 5 4 3 36 36 H 1.08999 * 109.46973 * 307.89672 * 5 4 3 37 37 H 1.08998 * 109.46694 * 67.89573 * 5 4 3 38 38 H 1.09001 * 109.46914 * 315.61997 * 6 4 3 39 39 H 1.09001 * 109.47183 * 195.61667 * 6 4 3 40 40 H 1.08997 * 110.71888 * 88.02287 * 9 7 6 41 41 H 1.08999 * 110.87219 * 324.81679 * 9 7 6 42 42 H 1.09005 * 109.88301 * 262.77560 * 10 9 7 43 43 H 1.09004 * 109.88321 * 141.61122 * 10 9 7 44 44 H 0.96996 * 120.00101 * 359.97438 * 14 12 11 45 45 H 1.09004 * 109.47067 * 59.99605 * 15 14 12 46 46 H 1.09000 * 109.47146 * 299.99857 * 15 14 12 47 47 H 0.96999 * 120.00274 * 0.02562 * 18 16 15 48 48 H 0.96994 * 120.00156 * 0.28271 * 22 21 19 49 49 H 1.08991 * 110.36396 * 94.48260 * 27 11 10 50 50 H 1.08997 * 110.36552 * 216.80702 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5089 1.4425 0.0006 5 6 4.0360 0.8855 -1.2525 6 6 4.0353 2.7932 0.2387 7 6 3.8829 3.1461 1.7196 8 1 2.8590 2.9811 2.0551 9 6 4.3286 4.6072 1.9918 10 6 4.7592 4.5669 3.4732 11 7 5.0755 3.1682 3.7980 12 6 5.4725 2.7120 5.0024 13 8 5.7083 1.5293 5.1569 14 7 5.6082 3.5668 6.0356 15 6 6.0393 3.0708 7.3449 16 6 6.1115 4.2190 8.3182 17 8 5.8301 5.3412 7.9541 18 7 6.4878 3.9988 9.5935 19 6 6.5540 5.0435 10.4788 20 1 6.3042 6.0430 10.1544 21 6 6.9425 4.8166 11.7935 22 7 7.2412 3.5997 12.1895 23 14 7.0320 6.2399 13.0000 24 1 7.4626 5.7360 14.3288 25 1 8.0110 7.2432 12.5100 26 1 5.6936 6.8719 13.1200 27 6 4.8925 2.3486 2.5863 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9564 0.8899 34 1 1.6766 1.9563 -0.8900 35 1 5.1164 0.7669 -1.1713 36 1 3.5770 -0.0852 -1.4399 37 1 3.8055 1.5615 -2.0758 38 1 3.4800 3.5111 -0.3649 39 1 5.0896 2.8259 -0.0360 40 1 3.4965 5.2969 1.8507 41 1 5.1683 4.8824 1.3536 42 1 3.9444 4.9192 4.1058 43 1 5.6413 5.1901 3.6200 44 1 5.4204 4.5104 5.9122 45 1 7.0230 2.6103 7.2531 46 1 5.3245 2.3317 7.7068 47 1 6.7125 3.1013 9.8848 48 1 7.1945 2.8606 11.5631 49 1 5.8398 2.2332 2.0599 50 1 4.4809 1.3734 2.8466 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358274914.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:48:33 Heat of formation + Delta-G solvation = -66.781389 kcal Electronic energy + Delta-G solvation = -27658.929810 eV Core-core repulsion = 23720.902063 eV Total energy + Delta-G solvation = -3938.027747 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.211 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.27183 -38.91270 -38.25726 -37.10681 -34.68567 -33.88710 -33.65019 -31.97598 -31.18983 -29.52985 -27.90761 -27.33189 -26.18825 -24.36209 -23.50147 -22.53941 -21.27166 -20.39934 -19.92232 -19.74021 -18.27050 -17.97114 -16.71073 -16.13025 -15.97243 -15.82158 -15.57062 -15.35108 -14.83963 -14.70269 -14.36583 -14.17929 -13.94077 -13.72530 -13.59862 -13.36159 -13.17985 -12.92556 -12.65795 -12.55570 -12.42091 -12.27005 -12.16821 -11.90594 -11.71297 -11.48606 -11.29968 -11.18989 -11.12895 -11.00224 -10.99631 -10.71722 -10.23951 -10.02984 -9.92081 -9.65336 -8.91166 -8.70837 -8.64896 -8.40813 -8.13839 -6.82677 -3.97054 2.71603 3.25204 3.32060 3.39945 3.43930 3.52540 3.72545 4.06765 4.24260 4.32120 4.41138 4.49913 4.54332 4.66586 4.77657 4.85081 4.97780 4.99601 5.03785 5.08398 5.11867 5.19243 5.22469 5.32542 5.34914 5.38417 5.41908 5.50834 5.54868 5.58475 5.69094 5.74853 5.78662 5.81935 5.88793 5.90636 5.93431 5.95077 6.00622 6.28589 6.66572 6.67759 6.73174 7.21342 7.69836 7.99279 8.19183 8.48216 8.66320 8.81076 9.36850 9.71223 10.60207 Molecular weight = 326.21amu Principal moments of inertia in cm(-1) A = 0.025716 B = 0.001890 C = 0.001853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.548333 B =14809.435497 C =15105.567502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C 0.053 3.947 4 N -0.542 5.542 5 C 0.022 3.978 6 C 0.067 3.933 7 C -0.097 4.097 8 H 0.086 0.914 9 C -0.124 4.124 10 C 0.098 3.902 11 N -0.641 5.641 12 C 0.723 3.277 13 O -0.595 6.595 14 N -0.723 5.723 15 C 0.128 3.872 16 C 0.432 3.568 17 O -0.592 6.592 18 N -0.562 5.562 19 C -0.386 4.386 20 H 0.101 0.899 21 C -0.007 4.007 22 N -0.893 5.893 23 Si 1.093 2.907 24 H -0.278 1.278 25 H -0.283 1.283 26 H -0.283 1.283 27 C 0.144 3.856 28 H 0.055 0.945 29 H 0.051 0.949 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.031 0.969 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.023 0.977 38 H 0.041 0.959 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.077 0.923 42 H 0.067 0.933 43 H 0.068 0.932 44 H 0.406 0.594 45 H 0.081 0.919 46 H 0.081 0.919 47 H 0.380 0.620 48 H 0.264 0.736 49 H 0.062 0.938 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.363 -3.304 -27.199 28.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.075 4.075 4 N -0.266 5.266 5 C -0.126 4.126 6 C -0.061 4.061 7 C -0.116 4.116 8 H 0.104 0.896 9 C -0.163 4.163 10 C -0.025 4.025 11 N -0.380 5.380 12 C 0.424 3.576 13 O -0.474 6.474 14 N -0.381 5.381 15 C 0.000 4.000 16 C 0.218 3.782 17 O -0.478 6.478 18 N -0.198 5.198 19 C -0.515 4.515 20 H 0.119 0.881 21 C -0.210 4.210 22 N -0.532 5.532 23 Si 0.919 3.081 24 H -0.203 1.203 25 H -0.209 1.209 26 H -0.209 1.209 27 C 0.021 3.979 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.094 0.906 34 H 0.050 0.950 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.042 0.958 38 H 0.060 0.940 39 H 0.096 0.904 40 H 0.100 0.900 41 H 0.096 0.904 42 H 0.086 0.914 43 H 0.086 0.914 44 H 0.244 0.756 45 H 0.099 0.901 46 H 0.099 0.901 47 H 0.213 0.787 48 H 0.075 0.925 49 H 0.080 0.920 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -8.814 -3.343 -25.212 26.916 hybrid contribution -0.576 0.064 -2.184 2.260 sum -9.390 -3.279 -27.396 29.145 Atomic orbital electron populations 1.21738 0.95638 1.01854 1.01744 1.21557 0.95385 0.96335 1.02778 1.22226 0.87069 0.97415 1.00785 1.61952 1.07744 1.22019 1.34894 1.22440 1.00916 0.99758 0.89495 1.22052 1.00442 0.88761 0.94864 1.22420 1.00139 0.94481 0.94587 0.89559 1.22643 1.01772 0.96647 0.95215 1.21986 1.00624 0.83613 0.96279 1.47531 1.72320 1.09014 1.09137 1.15346 0.78316 0.84739 0.79175 1.90904 1.58462 1.14966 1.83040 1.44769 1.72639 1.11831 1.08880 1.20770 1.01076 0.95909 0.82249 1.19685 0.85315 0.89637 0.83546 1.90489 1.55479 1.24116 1.77666 1.41852 1.58884 1.10546 1.08544 1.20562 1.47518 0.90814 0.92637 0.88103 1.26596 0.94726 1.02749 0.96942 1.70890 1.44924 0.99489 1.37861 0.83111 0.77046 0.72843 0.75140 1.20307 1.20929 1.20921 1.21976 0.97763 0.94932 0.83204 0.92552 0.93010 0.92494 0.92041 0.90912 0.90587 0.95035 0.91252 0.91048 0.95818 0.94048 0.90369 0.90011 0.90386 0.91427 0.91389 0.75584 0.90083 0.90078 0.78686 0.92498 0.92021 0.90031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.91 37.15 0.37 -0.51 16 2 C -0.12 -0.81 5.87 -26.74 -0.16 -0.97 16 3 C 0.05 0.36 4.79 -3.83 -0.02 0.34 16 4 N -0.54 -4.02 4.63 -242.91 -1.12 -5.15 16 5 C 0.02 0.14 9.36 60.07 0.56 0.70 16 6 C 0.07 0.45 4.46 -3.82 -0.02 0.44 16 7 C -0.10 -0.78 3.10 -88.35 -0.27 -1.06 16 8 H 0.09 0.75 6.69 -51.93 -0.35 0.40 16 9 C -0.12 -0.91 6.41 -24.89 -0.16 -1.07 16 10 C 0.10 1.04 6.15 -3.06 -0.02 1.02 16 11 N -0.64 -8.86 3.33 -176.09 -0.59 -9.44 16 12 C 0.72 12.92 8.49 -86.92 -0.74 12.18 16 13 O -0.59 -12.53 16.60 5.29 0.09 -12.44 16 14 N -0.72 -13.13 5.49 -66.42 -0.36 -13.49 16 15 C 0.13 2.50 6.15 -5.19 -0.03 2.46 16 16 C 0.43 10.18 7.85 -10.99 -0.09 10.10 16 17 O -0.59 -15.52 15.24 5.55 0.08 -15.44 16 18 N -0.56 -14.09 5.28 -10.96 -0.06 -14.15 16 19 C -0.39 -10.71 9.68 -14.93 -0.14 -10.85 16 20 H 0.10 2.93 7.16 -52.48 -0.38 2.56 16 21 C -0.01 -0.18 5.50 -17.47 -0.10 -0.27 16 22 N -0.89 -24.86 13.68 55.50 0.76 -24.10 16 23 Si 1.09 23.88 29.92 -169.99 -5.09 18.79 16 24 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 25 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 26 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 27 C 0.14 1.67 6.32 -2.41 -0.02 1.65 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.38 6.40 -51.93 -0.33 0.05 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.08 0.55 6.58 -51.93 -0.34 0.21 16 34 H 0.03 0.20 8.12 -51.93 -0.42 -0.22 16 35 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.07 0.41 6.15 -51.93 -0.32 0.09 16 37 H 0.02 0.13 8.14 -51.93 -0.42 -0.29 16 38 H 0.04 0.25 8.00 -51.93 -0.42 -0.17 16 39 H 0.08 0.51 7.77 -51.93 -0.40 0.10 16 40 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.08 0.50 8.04 -51.93 -0.42 0.08 16 42 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.41 7.23 6.42 -40.82 -0.26 6.97 16 45 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 46 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 47 H 0.38 8.85 6.73 -40.82 -0.27 8.57 16 48 H 0.26 7.07 6.77 -40.82 -0.28 6.80 16 49 H 0.06 0.70 7.92 -51.93 -0.41 0.29 16 50 H 0.08 1.10 8.03 -51.93 -0.42 0.68 16 LS Contribution 399.90 15.07 6.03 6.03 Total: -1.00 -33.67 399.90 -9.55 -43.22 By element: Atomic # 1 Polarization: 20.47 SS G_CDS: -8.46 Total: 12.01 kcal Atomic # 6 Polarization: 14.98 SS G_CDS: -0.83 Total: 14.15 kcal Atomic # 7 Polarization: -64.95 SS G_CDS: -1.37 Total: -66.33 kcal Atomic # 8 Polarization: -28.05 SS G_CDS: 0.17 Total: -27.88 kcal Atomic # 14 Polarization: 23.88 SS G_CDS: -5.09 Total: 18.79 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -33.67 -9.55 -43.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358274914.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.557 kcal (2) G-P(sol) polarization free energy of solvation -33.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds