Wall clock time and date at job start Fri Apr 10 2020 14:48:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47100 * 2 1 4 4 N 1.46900 * 109.47231 * 179.97438 * 3 2 1 5 5 C 1.46911 * 111.00096 * 66.04516 * 4 3 2 6 6 C 1.46906 * 111.00161 * 189.99790 * 4 3 2 7 7 C 1.52996 * 109.46775 * 75.61752 * 6 4 3 8 8 H 1.09000 * 110.88874 * 308.19448 * 7 6 4 9 9 C 1.55164 * 111.00044 * 184.32042 * 7 6 4 10 10 C 1.54324 * 102.93928 * 206.38567 * 9 7 6 11 11 N 1.47028 * 107.27386 * 22.19240 * 10 9 7 12 12 C 1.34775 * 125.64918 * 181.02239 * 11 10 9 13 13 O 1.21580 * 119.99826 * 180.02562 * 12 11 10 14 14 N 1.34776 * 119.99827 * 0.02588 * 12 11 10 15 15 C 1.46499 * 119.99853 * 179.97438 * 14 12 11 16 16 C 1.50698 * 109.47251 * 179.97438 * 15 14 12 17 17 O 1.21292 * 119.99918 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99997 * 179.97438 * 16 15 14 19 19 C 1.37099 * 119.99945 * 179.97438 * 18 16 15 20 20 H 1.08007 * 120.00290 * 0.02562 * 19 18 16 21 21 C 1.38953 * 120.00171 * 180.02562 * 19 18 16 22 22 N 1.31411 * 119.99542 * 359.72648 * 21 19 18 23 23 Si 1.86802 * 120.00146 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46929 * 179.72601 * 23 21 19 25 25 H 1.48498 * 109.46984 * 299.72541 * 23 21 19 26 26 H 1.48497 * 109.46993 * 59.72098 * 23 21 19 27 27 C 1.47428 * 108.70041 * 1.28717 * 11 10 9 28 28 H 1.08998 * 109.47486 * 300.00440 * 1 2 3 29 29 H 1.09004 * 109.47479 * 60.00266 * 1 2 3 30 30 H 1.08997 * 109.47453 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47307 * 240.00069 * 2 1 3 32 32 H 1.09004 * 109.47479 * 119.99734 * 2 1 3 33 33 H 1.08993 * 109.47629 * 59.99807 * 3 2 1 34 34 H 1.09004 * 109.46983 * 299.99698 * 3 2 1 35 35 H 1.09000 * 109.47005 * 187.89492 * 5 4 3 36 36 H 1.08999 * 109.46973 * 307.89672 * 5 4 3 37 37 H 1.08998 * 109.46694 * 67.89573 * 5 4 3 38 38 H 1.09001 * 109.46914 * 315.61997 * 6 4 3 39 39 H 1.09001 * 109.47183 * 195.61667 * 6 4 3 40 40 H 1.08997 * 110.71888 * 88.02287 * 9 7 6 41 41 H 1.08999 * 110.87219 * 324.81679 * 9 7 6 42 42 H 1.09005 * 109.88301 * 262.77560 * 10 9 7 43 43 H 1.09004 * 109.88321 * 141.61122 * 10 9 7 44 44 H 0.96996 * 120.00101 * 359.97438 * 14 12 11 45 45 H 1.09004 * 109.47067 * 59.99605 * 15 14 12 46 46 H 1.09000 * 109.47146 * 299.99857 * 15 14 12 47 47 H 0.96999 * 120.00274 * 0.02562 * 18 16 15 48 48 H 0.96994 * 120.00156 * 0.28271 * 22 21 19 49 49 H 1.08991 * 110.36396 * 94.48260 * 27 11 10 50 50 H 1.08997 * 110.36552 * 216.80702 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5089 1.4425 0.0006 5 6 4.0360 0.8855 -1.2525 6 6 4.0353 2.7932 0.2387 7 6 3.8829 3.1461 1.7196 8 1 2.8590 2.9811 2.0551 9 6 4.3286 4.6072 1.9918 10 6 4.7592 4.5669 3.4732 11 7 5.0755 3.1682 3.7980 12 6 5.4725 2.7120 5.0024 13 8 5.7083 1.5293 5.1569 14 7 5.6082 3.5668 6.0356 15 6 6.0393 3.0708 7.3449 16 6 6.1115 4.2190 8.3182 17 8 5.8301 5.3412 7.9541 18 7 6.4878 3.9988 9.5935 19 6 6.5540 5.0435 10.4788 20 1 6.3042 6.0430 10.1544 21 6 6.9425 4.8166 11.7935 22 7 7.2412 3.5997 12.1895 23 14 7.0320 6.2399 13.0000 24 1 7.4626 5.7360 14.3288 25 1 8.0110 7.2432 12.5100 26 1 5.6936 6.8719 13.1200 27 6 4.8925 2.3486 2.5863 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9564 0.8899 34 1 1.6766 1.9563 -0.8900 35 1 5.1164 0.7669 -1.1713 36 1 3.5770 -0.0852 -1.4399 37 1 3.8055 1.5615 -2.0758 38 1 3.4800 3.5111 -0.3649 39 1 5.0896 2.8259 -0.0360 40 1 3.4965 5.2969 1.8507 41 1 5.1683 4.8824 1.3536 42 1 3.9444 4.9192 4.1058 43 1 5.6413 5.1901 3.6200 44 1 5.4204 4.5104 5.9122 45 1 7.0230 2.6103 7.2531 46 1 5.3245 2.3317 7.7068 47 1 6.7125 3.1013 9.8848 48 1 7.1945 2.8606 11.5631 49 1 5.8398 2.2332 2.0599 50 1 4.4809 1.3734 2.8466 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358274914.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:48:32 Heat of formation + Delta-G solvation = -90.934339 kcal Electronic energy + Delta-G solvation = -27659.977161 eV Core-core repulsion = 23720.902063 eV Total energy + Delta-G solvation = -3939.075097 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.211 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.51771 -40.39416 -39.44899 -38.02178 -36.62622 -35.42716 -34.38374 -33.28901 -32.78554 -30.32464 -29.35438 -27.88029 -27.16451 -26.10956 -24.53173 -23.20924 -21.88720 -21.78916 -21.17480 -20.91232 -20.09912 -19.49121 -17.82337 -17.57084 -17.24400 -16.77935 -16.65789 -16.40997 -16.30422 -15.81211 -15.68194 -15.38223 -15.30391 -14.77173 -14.56574 -14.31324 -14.16981 -13.91018 -13.83095 -13.57289 -13.40032 -13.29508 -13.09178 -12.94035 -12.79809 -12.65892 -12.28514 -12.11981 -11.95736 -11.90938 -11.87105 -11.73042 -11.60016 -11.58792 -11.45993 -11.28101 -10.63778 -10.39776 -10.19007 -9.57579 -9.21604 -8.97101 -6.12963 1.43258 1.46641 1.56518 1.84252 1.86675 2.01351 2.39859 2.77574 2.92471 3.06103 3.12611 3.61478 3.64751 3.83186 3.95774 4.02065 4.14674 4.21737 4.28954 4.32506 4.34391 4.44725 4.47352 4.51933 4.58706 4.64649 4.70518 4.74914 4.78017 4.84933 4.90875 4.93393 4.95332 5.06946 5.10051 5.20558 5.22414 5.24043 5.31262 5.37009 5.41880 5.57352 5.88470 5.95993 6.16702 6.17379 6.45453 6.60831 6.84376 7.31603 7.41789 7.72937 8.49454 Molecular weight = 326.21amu Principal moments of inertia in cm(-1) A = 0.025716 B = 0.001890 C = 0.001853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.548333 B =14809.435497 C =15105.567502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C 0.055 3.945 4 N -0.561 5.561 5 C 0.023 3.977 6 C 0.072 3.928 7 C -0.083 4.083 8 H 0.082 0.918 9 C -0.111 4.111 10 C 0.089 3.911 11 N -0.638 5.638 12 C 0.718 3.282 13 O -0.632 6.632 14 N -0.723 5.723 15 C 0.141 3.859 16 C 0.439 3.561 17 O -0.617 6.617 18 N -0.572 5.572 19 C -0.412 4.412 20 H 0.082 0.918 21 C -0.040 4.040 22 N -0.911 5.911 23 Si 1.137 2.863 24 H -0.274 1.274 25 H -0.270 1.270 26 H -0.270 1.270 27 C 0.141 3.859 28 H 0.051 0.949 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.054 0.946 33 H 0.070 0.930 34 H 0.040 0.960 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.032 0.968 38 H 0.058 0.942 39 H 0.084 0.916 40 H 0.105 0.895 41 H 0.094 0.906 42 H 0.067 0.933 43 H 0.070 0.930 44 H 0.409 0.591 45 H 0.092 0.908 46 H 0.092 0.908 47 H 0.387 0.613 48 H 0.260 0.740 49 H 0.065 0.935 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.873 -2.228 -28.867 30.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.158 4.158 3 C -0.072 4.072 4 N -0.285 5.285 5 C -0.124 4.124 6 C -0.056 4.056 7 C -0.103 4.103 8 H 0.100 0.900 9 C -0.149 4.149 10 C -0.033 4.033 11 N -0.375 5.375 12 C 0.419 3.581 13 O -0.514 6.514 14 N -0.381 5.381 15 C 0.013 3.987 16 C 0.226 3.774 17 O -0.505 6.505 18 N -0.209 5.209 19 C -0.541 4.541 20 H 0.100 0.900 21 C -0.239 4.239 22 N -0.549 5.549 23 Si 0.956 3.044 24 H -0.199 1.199 25 H -0.195 1.195 26 H -0.196 1.196 27 C 0.019 3.981 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.058 0.942 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.051 0.949 38 H 0.076 0.924 39 H 0.102 0.898 40 H 0.123 0.877 41 H 0.113 0.887 42 H 0.085 0.915 43 H 0.088 0.912 44 H 0.247 0.753 45 H 0.110 0.890 46 H 0.110 0.890 47 H 0.222 0.778 48 H 0.071 0.929 49 H 0.083 0.917 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.341 -2.266 -26.942 28.605 hybrid contribution -0.439 -0.311 -1.769 1.849 sum -9.781 -2.577 -28.711 30.440 Atomic orbital electron populations 1.21719 0.94995 1.02074 1.01951 1.21525 0.95935 0.96294 1.02089 1.22193 0.86874 0.97330 1.00827 1.61934 1.08118 1.22614 1.35825 1.22434 1.00843 0.99958 0.89214 1.22018 1.01053 0.88873 0.93686 1.22337 0.98684 0.94393 0.94910 0.89998 1.22648 1.03179 0.96307 0.92767 1.22266 1.00803 0.81522 0.98724 1.47646 1.70644 1.10968 1.08284 1.15491 0.78372 0.84140 0.80078 1.90870 1.60211 1.16446 1.83901 1.44691 1.72931 1.11945 1.08566 1.20594 1.02103 0.94109 0.81927 1.20325 0.83308 0.90249 0.83511 1.90467 1.56101 1.25697 1.78200 1.41882 1.59622 1.10505 1.08927 1.20597 1.48979 0.90801 0.93735 0.90017 1.27961 0.93442 1.04268 0.98248 1.70964 1.45954 0.99982 1.38050 0.82601 0.77959 0.70584 0.73294 1.19909 1.19547 1.19571 1.22126 0.98898 0.94283 0.82818 0.92942 0.92155 0.92312 0.91566 0.92729 0.91175 0.94204 0.91283 0.90981 0.94934 0.92407 0.89803 0.87682 0.88706 0.91484 0.91183 0.75327 0.89001 0.89046 0.77842 0.92869 0.91657 0.92498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.91 71.98 0.71 -0.88 16 2 C -0.12 -1.51 5.87 30.59 0.18 -1.33 16 3 C 0.06 0.68 4.79 86.30 0.41 1.09 16 4 N -0.56 -7.49 4.63 -922.43 -4.27 -11.76 16 5 C 0.02 0.25 9.36 127.69 1.20 1.44 16 6 C 0.07 0.79 4.46 86.30 0.38 1.18 16 7 C -0.08 -1.20 3.10 -9.32 -0.03 -1.22 16 8 H 0.08 1.28 6.69 -2.39 -0.02 1.27 16 9 C -0.11 -1.29 6.41 31.79 0.20 -1.09 16 10 C 0.09 1.74 6.15 86.73 0.53 2.27 16 11 N -0.64 -17.27 3.33 -829.30 -2.76 -20.02 16 12 C 0.72 25.64 8.49 179.06 1.52 27.16 16 13 O -0.63 -26.94 16.60 -3.97 -0.07 -27.00 16 14 N -0.72 -26.09 5.49 -482.31 -2.65 -28.73 16 15 C 0.14 5.46 6.15 85.63 0.53 5.98 16 16 C 0.44 20.76 7.85 87.66 0.69 21.44 16 17 O -0.62 -32.57 15.24 -3.07 -0.05 -32.61 16 18 N -0.57 -28.96 5.28 -306.98 -1.62 -30.58 16 19 C -0.41 -23.07 9.68 84.04 0.81 -22.26 16 20 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 21 C -0.04 -2.15 5.50 84.93 0.47 -1.68 16 22 N -0.91 -50.62 13.68 21.66 0.30 -50.32 16 23 Si 1.14 47.40 29.92 68.60 2.05 49.45 16 24 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 25 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 26 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 27 C 0.14 3.18 6.32 86.93 0.55 3.73 16 28 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16 30 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.07 0.75 6.40 -2.39 -0.02 0.74 16 32 H 0.05 0.87 8.14 -2.38 -0.02 0.85 16 33 H 0.07 0.93 6.58 -2.39 -0.02 0.92 16 34 H 0.04 0.43 8.12 -2.39 -0.02 0.41 16 35 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.07 0.74 6.15 -2.39 -0.01 0.73 16 37 H 0.03 0.29 8.14 -2.39 -0.02 0.27 16 38 H 0.06 0.49 8.00 -2.39 -0.02 0.47 16 39 H 0.08 0.86 7.77 -2.39 -0.02 0.84 16 40 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.09 0.85 8.04 -2.39 -0.02 0.83 16 42 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 43 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 44 H 0.41 14.42 6.42 -92.71 -0.60 13.82 16 45 H 0.09 3.39 8.14 -2.39 -0.02 3.37 16 46 H 0.09 3.38 8.14 -2.39 -0.02 3.36 16 47 H 0.39 18.25 6.73 -92.71 -0.62 17.63 16 48 H 0.26 14.08 6.77 -92.71 -0.63 13.45 16 49 H 0.07 1.43 7.92 -2.39 -0.02 1.41 16 50 H 0.06 1.57 8.03 -2.39 -0.02 1.55 16 Total: -1.00 -72.54 399.90 -1.04 -73.58 By element: Atomic # 1 Polarization: 42.31 SS G_CDS: -0.14 Total: 42.18 kcal Atomic # 6 Polarization: 27.68 SS G_CDS: 8.16 Total: 35.84 kcal Atomic # 7 Polarization: -130.42 SS G_CDS: -11.00 Total: -141.42 kcal Atomic # 8 Polarization: -59.50 SS G_CDS: -0.11 Total: -59.62 kcal Atomic # 14 Polarization: 47.40 SS G_CDS: 2.05 Total: 49.45 kcal Total: -72.54 -1.04 -73.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358274914.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.356 kcal (2) G-P(sol) polarization free energy of solvation -72.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds