Wall clock time and date at job start Fri Apr 10 2020 14:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47057 * 2 1 4 4 H 1.09001 * 109.46956 * 305.00201 * 3 2 1 5 5 C 1.53005 * 109.46961 * 185.00081 * 3 2 1 6 6 N 1.46502 * 109.46898 * 65.00365 * 3 2 1 7 7 C 1.34770 * 119.99718 * 204.99908 * 6 3 2 8 8 O 1.21282 * 120.00581 * 359.97438 * 7 6 3 9 9 C 1.50705 * 119.99763 * 179.97438 * 7 6 3 10 10 N 1.46906 * 109.46714 * 180.69249 * 9 7 6 11 11 C 1.46904 * 110.99852 * 63.63279 * 10 9 7 12 12 C 1.53238 * 109.33820 * 172.74063 * 11 10 9 13 13 N 1.47079 * 108.51931 * 53.82930 * 12 11 10 14 14 C 1.34787 * 120.88016 * 128.79315 * 13 12 11 15 15 O 1.21585 * 119.99786 * 354.86524 * 14 13 12 16 16 N 1.34772 * 120.00030 * 174.86684 * 14 13 12 17 17 C 1.46498 * 120.00060 * 174.91125 * 16 14 13 18 18 C 1.50707 * 109.46955 * 179.97438 * 17 16 14 19 19 H 1.07994 * 120.00127 * 359.97438 * 18 17 16 20 20 C 1.37879 * 119.99551 * 180.02562 * 18 17 16 21 21 N 1.31512 * 120.00237 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99677 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47231 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.46890 * 120.00162 * 22 20 18 25 25 H 1.48497 * 109.47066 * 240.00175 * 22 20 18 26 26 C 1.47076 * 118.24189 * 308.81093 * 13 12 11 27 27 C 1.46897 * 111.00492 * 299.32620 * 10 9 7 28 28 H 1.08994 * 109.47565 * 59.99883 * 1 2 3 29 29 H 1.09005 * 109.47125 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46831 * 299.99275 * 1 2 3 31 31 H 1.09005 * 109.46846 * 240.00215 * 2 1 3 32 32 H 1.09005 * 109.47145 * 120.00303 * 2 1 3 33 33 H 1.08995 * 109.47066 * 300.00131 * 5 3 2 34 34 H 1.09001 * 109.46848 * 60.00491 * 5 3 2 35 35 H 1.08995 * 109.46980 * 180.02562 * 5 3 2 36 36 H 0.96996 * 119.99979 * 24.99553 * 6 3 2 37 37 H 1.08998 * 109.46747 * 60.70125 * 9 7 6 38 38 H 1.08999 * 109.47357 * 300.69627 * 9 7 6 39 39 H 1.09001 * 109.49403 * 52.78270 * 11 10 9 40 40 H 1.08996 * 109.48979 * 292.70036 * 11 10 9 41 41 H 1.09001 * 109.62706 * 173.53872 * 12 11 10 42 42 H 1.09001 * 109.63343 * 293.92436 * 12 11 10 43 43 H 0.97004 * 119.99557 * 354.91021 * 16 14 13 44 44 H 1.08998 * 109.47216 * 299.99997 * 17 16 14 45 45 H 1.09006 * 109.46869 * 60.00104 * 17 16 14 46 46 H 0.96996 * 119.99838 * 179.97438 * 21 20 18 47 47 H 1.08993 * 109.63255 * 170.89507 * 26 13 12 48 48 H 1.09001 * 109.62779 * 291.48392 * 26 13 12 49 49 H 1.08997 * 109.49040 * 67.29496 * 27 10 9 50 50 H 1.08999 * 109.49534 * 307.21558 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5649 1.4443 -0.1257 6 7 1.6525 2.0974 1.2519 7 6 1.5256 3.4383 1.2997 8 8 1.7327 4.1029 0.3065 9 6 1.1264 4.1120 2.5873 10 7 1.0419 5.5631 2.3749 11 6 -0.0138 5.8931 1.4082 12 6 -0.1921 7.4139 1.3508 13 7 1.1161 8.0276 1.0767 14 6 1.2656 8.9213 0.0788 15 8 0.3359 9.1603 -0.6675 16 7 2.4454 9.5499 -0.0918 17 6 2.6437 10.4364 -1.2411 18 6 4.0368 11.0097 -1.1989 19 1 4.7072 10.7410 -0.3960 20 6 4.4550 11.8781 -2.1848 21 7 3.6381 12.2065 -3.1617 22 14 6.1815 12.5894 -2.1320 23 1 6.8959 12.0669 -0.9397 24 1 6.9167 12.1958 -3.3608 25 1 6.1046 14.0703 -2.0541 26 6 2.2571 7.6401 1.9200 27 6 2.3389 6.1102 1.9550 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8901 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8900 33 1 3.9994 0.9053 0.7160 34 1 3.8531 0.9571 -1.0572 35 1 3.9282 2.4719 -0.1253 36 1 1.4871 1.5660 2.0463 37 1 1.8712 3.8999 3.3543 38 1 0.1558 3.7346 2.9091 39 1 -0.9497 5.4286 1.7190 40 1 0.2669 5.5223 0.4224 41 1 -0.8911 7.6709 0.5549 42 1 -0.5758 7.7740 2.3054 43 1 3.1633 9.4154 0.5466 44 1 2.5110 9.8708 -2.1634 45 1 1.9162 11.2473 -1.2043 46 1 3.9322 12.8177 -3.8550 47 1 3.1773 8.0464 1.5004 48 1 2.1120 8.0221 2.9305 49 1 2.5869 5.7364 0.9616 50 1 3.1094 5.8033 2.6623 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426442573.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:46:37 Heat of formation + Delta-G solvation = -55.058771 kcal Electronic energy + Delta-G solvation = -28782.643360 eV Core-core repulsion = 24845.123944 eV Total energy + Delta-G solvation = -3937.519416 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.211 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.71474 -39.47196 -37.79223 -36.43068 -34.17107 -34.09371 -32.79287 -32.26418 -30.87237 -30.37479 -28.81652 -26.96841 -25.13637 -24.05561 -23.67950 -22.48011 -21.58278 -20.87617 -20.66846 -18.99892 -18.08014 -17.30444 -16.64829 -16.03240 -15.90341 -15.36707 -15.13689 -15.04259 -14.95584 -14.74032 -14.50161 -14.21179 -14.14597 -13.82288 -13.49714 -13.48370 -13.02967 -12.75836 -12.50349 -12.35517 -12.16493 -11.95045 -11.86619 -11.76439 -11.59683 -11.54251 -11.20013 -11.10638 -10.99295 -10.95491 -10.85301 -10.82954 -10.56333 -10.21978 -9.35852 -9.28022 -9.22553 -8.66071 -8.49833 -8.08512 -7.59444 -6.08609 -4.14572 2.35842 2.87391 3.27086 3.28483 3.35637 3.39358 3.74876 4.06221 4.25197 4.37381 4.53580 4.59444 4.62520 4.76067 4.77741 5.01181 5.02896 5.11915 5.15018 5.19394 5.21588 5.27356 5.35578 5.38724 5.45595 5.47304 5.50423 5.59017 5.62472 5.71270 5.77991 5.80844 5.90441 6.02625 6.09681 6.18002 6.36845 6.69487 6.81712 6.94188 7.19116 7.28369 7.61588 7.66068 7.67021 7.96611 7.98444 8.10955 8.84822 9.01427 9.42523 9.57396 11.01826 Molecular weight = 326.21amu Principal moments of inertia in cm(-1) A = 0.014561 B = 0.002621 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.492502 B =10680.190587 C =11582.850297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.130 4.130 3 C 0.138 3.862 4 H 0.088 0.912 5 C -0.163 4.163 6 N -0.727 5.727 7 C 0.476 3.524 8 O -0.524 6.524 9 C 0.035 3.965 10 N -0.511 5.511 11 C 0.027 3.973 12 C 0.140 3.860 13 N -0.637 5.637 14 C 0.699 3.301 15 O -0.601 6.601 16 N -0.730 5.730 17 C 0.266 3.734 18 C -0.538 4.538 19 H 0.062 0.938 20 C 0.062 3.938 21 N -0.886 5.886 22 Si 0.903 3.097 23 H -0.272 1.272 24 H -0.283 1.283 25 H -0.282 1.282 26 C 0.121 3.879 27 C 0.024 3.976 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.077 0.923 32 H 0.066 0.934 33 H 0.055 0.945 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.397 0.603 37 H 0.105 0.895 38 H 0.104 0.896 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.094 0.906 42 H 0.062 0.938 43 H 0.385 0.615 44 H 0.023 0.977 45 H 0.025 0.975 46 H 0.264 0.736 47 H 0.083 0.917 48 H 0.067 0.933 49 H 0.076 0.924 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.106 -26.836 14.936 30.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.168 4.168 3 C 0.033 3.967 4 H 0.106 0.894 5 C -0.222 4.222 6 N -0.380 5.380 7 C 0.261 3.739 8 O -0.401 6.401 9 C -0.097 4.097 10 N -0.233 5.233 11 C -0.101 4.101 12 C 0.016 3.984 13 N -0.377 5.377 14 C 0.401 3.599 15 O -0.480 6.480 16 N -0.384 5.384 17 C 0.145 3.855 18 C -0.577 4.577 19 H 0.080 0.920 20 C -0.141 4.141 21 N -0.523 5.523 22 Si 0.731 3.269 23 H -0.197 1.197 24 H -0.209 1.209 25 H -0.208 1.208 26 C -0.003 4.003 27 C -0.105 4.105 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.096 0.904 32 H 0.085 0.915 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.231 0.769 37 H 0.123 0.877 38 H 0.122 0.878 39 H 0.094 0.906 40 H 0.087 0.913 41 H 0.112 0.888 42 H 0.081 0.919 43 H 0.219 0.781 44 H 0.041 0.959 45 H 0.043 0.957 46 H 0.074 0.926 47 H 0.101 0.899 48 H 0.085 0.915 49 H 0.094 0.906 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.758 -25.759 13.867 29.639 hybrid contribution 1.503 -0.452 -0.065 1.571 sum -3.255 -26.211 13.802 29.801 Atomic orbital electron populations 1.21773 0.95262 1.01684 1.02310 1.21833 0.96586 0.95440 1.02987 1.21006 0.94966 0.92969 0.87772 0.89437 1.22168 0.95302 1.02801 1.01895 1.46317 1.70948 1.07303 1.13448 1.22354 0.77015 0.82401 0.92092 1.90722 1.49219 1.63117 1.36994 1.22364 1.03896 0.89059 0.94359 1.62398 1.06646 1.07862 1.46438 1.22739 0.94122 0.97009 0.96266 1.21353 0.85307 0.90328 1.01457 1.47266 1.09875 1.45652 1.34915 1.16039 0.84191 0.79237 0.80478 1.90842 1.40691 1.69003 1.47453 1.45827 1.12734 1.49052 1.30751 1.18974 0.96349 0.87905 0.82280 1.21262 0.98096 1.28000 1.10340 0.91989 1.24948 0.97950 0.96135 0.95064 1.69994 1.35536 1.34306 1.12485 0.86366 0.83732 0.78815 0.78008 1.19676 1.20863 1.20831 1.21587 0.89802 0.93777 0.95171 1.22769 0.90297 0.95349 1.02040 0.92497 0.92557 0.92622 0.90439 0.91489 0.92613 0.91675 0.91932 0.76885 0.87745 0.87814 0.90562 0.91318 0.88793 0.91945 0.78060 0.95924 0.95679 0.92584 0.89850 0.91462 0.90560 0.90568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 9.80 37.16 0.36 -0.44 16 2 C -0.13 -0.65 5.47 -26.73 -0.15 -0.80 16 3 C 0.14 1.02 2.57 -67.93 -0.17 0.85 16 4 H 0.09 0.90 7.58 -51.93 -0.39 0.51 16 5 C -0.16 -1.26 9.48 37.16 0.35 -0.91 16 6 N -0.73 -4.85 4.53 -53.80 -0.24 -5.09 16 7 C 0.48 4.60 7.21 -10.99 -0.08 4.52 16 8 O -0.52 -7.67 11.30 5.56 0.06 -7.60 16 9 C 0.04 0.27 5.83 -4.97 -0.03 0.24 16 10 N -0.51 -5.60 4.83 -235.76 -1.14 -6.74 16 11 C 0.03 0.35 5.19 -3.70 -0.02 0.33 16 12 C 0.14 2.12 6.61 -3.60 -0.02 2.10 16 13 N -0.64 -11.32 3.01 -178.19 -0.54 -11.85 16 14 C 0.70 16.09 8.31 -86.91 -0.72 15.37 16 15 O -0.60 -16.23 15.80 5.29 0.08 -16.14 16 16 N -0.73 -17.11 5.41 -66.41 -0.36 -17.47 16 17 C 0.27 7.54 5.43 -5.19 -0.03 7.51 16 18 C -0.54 -15.26 9.28 -34.44 -0.32 -15.58 16 19 H 0.06 1.65 7.60 -52.49 -0.40 1.25 16 20 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 21 N -0.89 -26.96 13.29 55.43 0.74 -26.23 16 22 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 23 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 26 C 0.12 1.70 6.49 -3.60 -0.02 1.68 16 27 C 0.02 0.30 5.14 -3.70 -0.02 0.28 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.05 0.28 7.75 -51.93 -0.40 -0.12 16 31 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 33 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.40 1.47 8.60 -40.82 -0.35 1.12 16 37 H 0.10 0.57 8.13 -51.93 -0.42 0.15 16 38 H 0.10 0.56 8.09 -51.93 -0.42 0.14 16 39 H 0.08 0.78 8.07 -51.93 -0.42 0.37 16 40 H 0.07 1.10 5.87 -51.93 -0.30 0.80 16 41 H 0.09 1.60 7.04 -51.93 -0.37 1.24 16 42 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.39 7.87 5.97 -40.82 -0.24 7.62 16 44 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 47 H 0.08 1.19 5.84 -51.93 -0.30 0.88 16 48 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 49 H 0.08 1.20 5.58 -51.93 -0.29 0.91 16 50 H 0.08 0.77 8.10 -51.93 -0.42 0.35 16 LS Contribution 393.42 15.07 5.93 5.93 Total: -1.00 -36.70 393.42 -9.97 -46.67 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -8.52 Total: 5.22 kcal Atomic # 6 Polarization: 17.80 SS G_CDS: -0.97 Total: 16.84 kcal Atomic # 7 Polarization: -65.84 SS G_CDS: -1.54 Total: -67.38 kcal Atomic # 8 Polarization: -23.89 SS G_CDS: 0.15 Total: -23.75 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -36.70 -9.97 -46.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426442573.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.385 kcal (2) G-P(sol) polarization free energy of solvation -36.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds