Wall clock time and date at job start Fri Apr 10 2020 14:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47057 * 2 1 4 4 H 1.09001 * 109.46956 * 305.00201 * 3 2 1 5 5 C 1.53005 * 109.46961 * 185.00081 * 3 2 1 6 6 N 1.46502 * 109.46898 * 65.00365 * 3 2 1 7 7 C 1.34770 * 119.99718 * 204.99908 * 6 3 2 8 8 O 1.21282 * 120.00581 * 359.97438 * 7 6 3 9 9 C 1.50705 * 119.99763 * 179.97438 * 7 6 3 10 10 N 1.46906 * 109.46714 * 180.69249 * 9 7 6 11 11 C 1.46904 * 110.99852 * 63.63279 * 10 9 7 12 12 C 1.53238 * 109.33820 * 172.74063 * 11 10 9 13 13 N 1.47079 * 108.51931 * 53.82930 * 12 11 10 14 14 C 1.34787 * 120.88016 * 128.79315 * 13 12 11 15 15 O 1.21585 * 119.99786 * 354.86524 * 14 13 12 16 16 N 1.34772 * 120.00030 * 174.86684 * 14 13 12 17 17 C 1.46498 * 120.00060 * 174.91125 * 16 14 13 18 18 C 1.50707 * 109.46955 * 179.97438 * 17 16 14 19 19 H 1.07994 * 120.00127 * 359.97438 * 18 17 16 20 20 C 1.37879 * 119.99551 * 180.02562 * 18 17 16 21 21 N 1.31512 * 120.00237 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99677 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47231 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.46890 * 120.00162 * 22 20 18 25 25 H 1.48497 * 109.47066 * 240.00175 * 22 20 18 26 26 C 1.47076 * 118.24189 * 308.81093 * 13 12 11 27 27 C 1.46897 * 111.00492 * 299.32620 * 10 9 7 28 28 H 1.08994 * 109.47565 * 59.99883 * 1 2 3 29 29 H 1.09005 * 109.47125 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46831 * 299.99275 * 1 2 3 31 31 H 1.09005 * 109.46846 * 240.00215 * 2 1 3 32 32 H 1.09005 * 109.47145 * 120.00303 * 2 1 3 33 33 H 1.08995 * 109.47066 * 300.00131 * 5 3 2 34 34 H 1.09001 * 109.46848 * 60.00491 * 5 3 2 35 35 H 1.08995 * 109.46980 * 180.02562 * 5 3 2 36 36 H 0.96996 * 119.99979 * 24.99553 * 6 3 2 37 37 H 1.08998 * 109.46747 * 60.70125 * 9 7 6 38 38 H 1.08999 * 109.47357 * 300.69627 * 9 7 6 39 39 H 1.09001 * 109.49403 * 52.78270 * 11 10 9 40 40 H 1.08996 * 109.48979 * 292.70036 * 11 10 9 41 41 H 1.09001 * 109.62706 * 173.53872 * 12 11 10 42 42 H 1.09001 * 109.63343 * 293.92436 * 12 11 10 43 43 H 0.97004 * 119.99557 * 354.91021 * 16 14 13 44 44 H 1.08998 * 109.47216 * 299.99997 * 17 16 14 45 45 H 1.09006 * 109.46869 * 60.00104 * 17 16 14 46 46 H 0.96996 * 119.99838 * 179.97438 * 21 20 18 47 47 H 1.08993 * 109.63255 * 170.89507 * 26 13 12 48 48 H 1.09001 * 109.62779 * 291.48392 * 26 13 12 49 49 H 1.08997 * 109.49040 * 67.29496 * 27 10 9 50 50 H 1.08999 * 109.49534 * 307.21558 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5649 1.4443 -0.1257 6 7 1.6525 2.0974 1.2519 7 6 1.5256 3.4383 1.2997 8 8 1.7327 4.1029 0.3065 9 6 1.1264 4.1120 2.5873 10 7 1.0419 5.5631 2.3749 11 6 -0.0138 5.8931 1.4082 12 6 -0.1921 7.4139 1.3508 13 7 1.1161 8.0276 1.0767 14 6 1.2656 8.9213 0.0788 15 8 0.3359 9.1603 -0.6675 16 7 2.4454 9.5499 -0.0918 17 6 2.6437 10.4364 -1.2411 18 6 4.0368 11.0097 -1.1989 19 1 4.7072 10.7410 -0.3960 20 6 4.4550 11.8781 -2.1848 21 7 3.6381 12.2065 -3.1617 22 14 6.1815 12.5894 -2.1320 23 1 6.8959 12.0669 -0.9397 24 1 6.9167 12.1958 -3.3608 25 1 6.1046 14.0703 -2.0541 26 6 2.2571 7.6401 1.9200 27 6 2.3389 6.1102 1.9550 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8901 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8900 33 1 3.9994 0.9053 0.7160 34 1 3.8531 0.9571 -1.0572 35 1 3.9282 2.4719 -0.1253 36 1 1.4871 1.5660 2.0463 37 1 1.8712 3.8999 3.3543 38 1 0.1558 3.7346 2.9091 39 1 -0.9497 5.4286 1.7190 40 1 0.2669 5.5223 0.4224 41 1 -0.8911 7.6709 0.5549 42 1 -0.5758 7.7740 2.3054 43 1 3.1633 9.4154 0.5466 44 1 2.5110 9.8708 -2.1634 45 1 1.9162 11.2473 -1.2043 46 1 3.9322 12.8177 -3.8550 47 1 3.1773 8.0464 1.5004 48 1 2.1120 8.0221 2.9305 49 1 2.5869 5.7364 0.9616 50 1 3.1094 5.8033 2.6623 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426442573.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:46:36 Heat of formation + Delta-G solvation = -84.574646 kcal Electronic energy + Delta-G solvation = -28783.923265 eV Core-core repulsion = 24845.123944 eV Total energy + Delta-G solvation = -3938.799320 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.211 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -41.68538 -40.91022 -38.89059 -37.32135 -36.23343 -35.41466 -34.33480 -33.40913 -32.09472 -31.01219 -30.01159 -28.82661 -26.24887 -25.03222 -24.65781 -24.26248 -22.58246 -21.82045 -21.49366 -20.67119 -19.58967 -18.16564 -18.03327 -17.48159 -17.25694 -16.63958 -16.57251 -16.36404 -16.04949 -15.84996 -15.63666 -15.14479 -15.00977 -14.84252 -14.75580 -14.66398 -14.36390 -14.09925 -13.94058 -13.49633 -13.39488 -13.18390 -12.89024 -12.79678 -12.75163 -12.69601 -12.38433 -12.32674 -12.18608 -12.06386 -11.98689 -11.93268 -11.66562 -11.46520 -11.40521 -11.15213 -10.83234 -10.09855 -10.04373 -9.52751 -9.08996 -8.29783 -6.46881 1.41491 1.44201 1.57273 1.64714 1.75489 2.17949 2.27471 2.37493 2.85984 3.04727 3.16902 3.71990 3.89597 3.94343 4.01013 4.06560 4.08315 4.15730 4.31912 4.42480 4.45936 4.51290 4.55435 4.61348 4.64595 4.71356 4.73676 4.80233 4.82516 4.96269 5.01462 5.03286 5.10006 5.12618 5.20045 5.23356 5.26216 5.38177 5.45196 5.53726 5.62710 5.69620 5.81843 5.86439 5.89808 6.14020 6.62182 6.64415 7.15265 7.23203 7.35096 7.66852 8.83209 Molecular weight = 326.21amu Principal moments of inertia in cm(-1) A = 0.014561 B = 0.002621 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.492502 B =10680.190587 C =11582.850297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C 0.137 3.863 4 H 0.050 0.950 5 C -0.158 4.158 6 N -0.709 5.709 7 C 0.471 3.529 8 O -0.581 6.581 9 C 0.038 3.962 10 N -0.503 5.503 11 C 0.039 3.961 12 C 0.134 3.866 13 N -0.629 5.629 14 C 0.692 3.308 15 O -0.651 6.651 16 N -0.724 5.724 17 C 0.286 3.714 18 C -0.554 4.554 19 H 0.083 0.917 20 C 0.002 3.998 21 N -0.931 5.931 22 Si 0.990 3.010 23 H -0.252 1.252 24 H -0.278 1.278 25 H -0.276 1.276 26 C 0.114 3.886 27 C 0.031 3.969 28 H 0.036 0.964 29 H 0.068 0.932 30 H 0.059 0.941 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.029 0.971 36 H 0.416 0.584 37 H 0.138 0.862 38 H 0.136 0.864 39 H 0.108 0.892 40 H 0.031 0.969 41 H 0.065 0.935 42 H 0.090 0.910 43 H 0.402 0.598 44 H -0.020 1.020 45 H -0.014 1.014 46 H 0.269 0.731 47 H 0.078 0.922 48 H 0.096 0.904 49 H 0.041 0.959 50 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.490 -29.079 18.734 34.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C 0.032 3.968 4 H 0.068 0.932 5 C -0.217 4.217 6 N -0.363 5.363 7 C 0.258 3.742 8 O -0.461 6.461 9 C -0.093 4.093 10 N -0.225 5.225 11 C -0.090 4.090 12 C 0.011 3.989 13 N -0.367 5.367 14 C 0.393 3.607 15 O -0.534 6.534 16 N -0.380 5.380 17 C 0.163 3.837 18 C -0.591 4.591 19 H 0.101 0.899 20 C -0.198 4.198 21 N -0.570 5.570 22 Si 0.812 3.188 23 H -0.175 1.175 24 H -0.204 1.204 25 H -0.202 1.202 26 C -0.008 4.008 27 C -0.097 4.097 28 H 0.055 0.945 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.099 0.901 32 H 0.109 0.891 33 H 0.095 0.905 34 H 0.088 0.912 35 H 0.048 0.952 36 H 0.254 0.746 37 H 0.156 0.844 38 H 0.154 0.846 39 H 0.126 0.874 40 H 0.050 0.950 41 H 0.084 0.916 42 H 0.108 0.892 43 H 0.239 0.761 44 H -0.002 1.002 45 H 0.004 0.996 46 H 0.078 0.922 47 H 0.096 0.904 48 H 0.114 0.886 49 H 0.059 0.941 50 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -3.139 -28.108 17.779 33.407 hybrid contribution 0.917 0.124 -1.223 1.534 sum -2.222 -27.984 16.555 32.590 Atomic orbital electron populations 1.21773 0.95415 1.02255 1.01565 1.21778 0.96307 0.93498 1.04302 1.20943 0.94706 0.94165 0.86960 0.93191 1.22117 0.95424 1.01005 1.03110 1.46146 1.69543 1.06670 1.13926 1.22790 0.76264 0.83011 0.92166 1.90739 1.51820 1.64463 1.39098 1.22611 1.06716 0.86407 0.93593 1.62404 1.05179 1.10355 1.44574 1.22557 0.96256 0.94847 0.95307 1.21578 0.83555 0.92227 1.01567 1.47336 1.12160 1.43716 1.33471 1.16274 0.83234 0.79908 0.81259 1.90796 1.42178 1.70748 1.49680 1.45443 1.13767 1.48758 1.29985 1.18412 0.96147 0.86789 0.82371 1.21595 0.97945 1.28319 1.11288 0.89904 1.26129 1.03192 0.96239 0.94202 1.70162 1.38346 1.35026 1.13463 0.85044 0.77137 0.77846 0.78753 1.17533 1.20382 1.20169 1.21912 0.88022 0.95409 0.95505 1.22654 0.92062 0.93754 1.01248 0.94493 0.91292 0.92165 0.90107 0.89138 0.90545 0.91207 0.95186 0.74612 0.84387 0.84635 0.87358 0.95028 0.91635 0.89212 0.76087 1.00249 0.99638 0.92184 0.90402 0.88569 0.94107 0.87208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.80 71.98 0.71 -0.66 16 2 C -0.12 -0.98 5.47 30.59 0.17 -0.81 16 3 C 0.14 1.98 2.57 44.99 0.12 2.10 16 4 H 0.05 1.12 7.58 -2.39 -0.02 1.10 16 5 C -0.16 -2.37 9.48 71.98 0.68 -1.68 16 6 N -0.71 -8.13 4.53 -442.52 -2.00 -10.13 16 7 C 0.47 8.50 7.21 87.66 0.63 9.13 16 8 O -0.58 -17.68 11.30 -3.03 -0.03 -17.72 16 9 C 0.04 0.43 5.83 85.56 0.50 0.93 16 10 N -0.50 -9.63 4.83 -899.80 -4.35 -13.98 16 11 C 0.04 0.96 5.19 86.38 0.45 1.41 16 12 C 0.13 4.07 6.61 86.35 0.57 4.64 16 13 N -0.63 -22.68 3.01 -835.94 -2.52 -25.20 16 14 C 0.69 33.53 8.31 179.05 1.49 35.02 16 15 O -0.65 -37.74 15.80 -3.98 -0.06 -37.81 16 16 N -0.72 -35.49 5.41 -482.29 -2.61 -38.10 16 17 C 0.29 17.21 5.43 85.64 0.47 17.68 16 18 C -0.55 -32.01 9.28 25.60 0.24 -31.77 16 19 H 0.08 4.34 7.60 -2.91 -0.02 4.32 16 20 C 0.00 0.10 5.46 84.66 0.46 0.56 16 21 N -0.93 -58.63 13.29 21.45 0.28 -58.34 16 22 Si 0.99 43.98 29.54 68.60 2.03 46.01 16 23 H -0.25 -10.31 7.11 99.48 0.71 -9.60 16 24 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 25 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 26 C 0.11 3.06 6.49 86.35 0.56 3.62 16 27 C 0.03 0.73 5.14 86.38 0.44 1.17 16 28 H 0.04 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.07 0.46 8.14 -2.38 -0.02 0.44 16 30 H 0.06 0.48 7.75 -2.39 -0.02 0.46 16 31 H 0.08 0.63 8.14 -2.38 -0.02 0.61 16 32 H 0.09 0.36 8.14 -2.38 -0.02 0.34 16 33 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.42 1.57 8.60 -92.71 -0.80 0.78 16 37 H 0.14 0.74 8.13 -2.39 -0.02 0.72 16 38 H 0.14 0.76 8.09 -2.39 -0.02 0.74 16 39 H 0.11 1.97 8.07 -2.39 -0.02 1.95 16 40 H 0.03 1.05 5.87 -2.39 -0.01 1.04 16 41 H 0.07 2.37 7.04 -2.39 -0.02 2.35 16 42 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 43 H 0.40 16.66 5.97 -92.71 -0.55 16.11 16 44 H -0.02 -1.38 8.14 -2.39 -0.02 -1.40 16 45 H -0.01 -0.96 8.14 -2.38 -0.02 -0.98 16 46 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 47 H 0.08 2.15 5.84 -2.39 -0.01 2.14 16 48 H 0.10 2.09 8.14 -2.39 -0.02 2.08 16 49 H 0.04 1.30 5.58 -2.39 -0.01 1.28 16 50 H 0.11 1.82 8.10 -2.39 -0.02 1.80 16 Total: -1.00 -88.17 393.42 -2.19 -90.36 By element: Atomic # 1 Polarization: 23.98 SS G_CDS: -0.41 Total: 23.57 kcal Atomic # 6 Polarization: 33.85 SS G_CDS: 7.48 Total: 41.33 kcal Atomic # 7 Polarization: -134.56 SS G_CDS: -11.19 Total: -145.75 kcal Atomic # 8 Polarization: -55.43 SS G_CDS: -0.10 Total: -55.52 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -88.17 -2.19 -90.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426442573.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.785 kcal (2) G-P(sol) polarization free energy of solvation -88.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds