Wall clock time and date at job start Fri Apr 10 2020 14:49:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47078 * 2 1 4 4 N 1.46503 * 109.46836 * 179.97438 * 3 2 1 5 5 C 1.34780 * 119.99662 * 180.02562 * 4 3 2 6 6 O 1.21282 * 119.99988 * 0.02562 * 5 4 3 7 7 C 1.50697 * 119.99975 * 180.02562 * 5 4 3 8 8 C 1.53001 * 109.47148 * 179.97438 * 7 5 4 9 9 N 1.46503 * 109.46836 * 179.97438 * 8 7 5 10 10 C 1.34780 * 119.99662 * 180.02562 * 9 8 7 11 11 O 1.21581 * 120.00089 * 354.92306 * 10 9 8 12 12 N 1.34774 * 119.99633 * 175.19700 * 10 9 8 13 13 C 1.47081 * 120.87815 * 184.43638 * 12 10 9 14 14 C 1.53694 * 108.27814 * 128.75300 * 13 12 10 15 15 N 1.46897 * 109.25719 * 54.08280 * 14 13 12 16 16 C 1.46894 * 111.00511 * 172.60739 * 15 14 13 17 17 C 1.50702 * 109.47090 * 294.30409 * 16 15 14 18 18 H 1.07997 * 119.99963 * 359.97438 * 17 16 15 19 19 C 1.37880 * 120.00192 * 179.97438 * 17 16 15 20 20 N 1.31522 * 119.99689 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00154 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46784 * 60.00104 * 21 19 17 23 23 H 1.48498 * 109.46818 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47205 * 300.00037 * 21 19 17 25 25 C 1.46904 * 111.26796 * 296.75582 * 15 14 13 26 26 C 1.47078 * 120.88580 * 4.71390 * 12 10 9 27 27 H 1.09003 * 109.47624 * 59.99978 * 1 2 3 28 28 H 1.09007 * 109.47194 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47369 * 299.99782 * 1 2 3 30 30 H 1.09000 * 109.47369 * 240.00218 * 2 1 3 31 31 H 1.08999 * 109.46930 * 120.00224 * 2 1 3 32 32 H 1.09000 * 109.46842 * 59.99895 * 3 2 1 33 33 H 1.08999 * 109.47423 * 299.99922 * 3 2 1 34 34 H 0.96993 * 120.00327 * 0.02562 * 4 3 2 35 35 H 1.09002 * 109.46953 * 59.99648 * 7 5 4 36 36 H 1.08999 * 109.46952 * 300.00114 * 7 5 4 37 37 H 1.08996 * 109.46823 * 60.00463 * 8 7 5 38 38 H 1.08997 * 109.46919 * 300.00081 * 8 7 5 39 39 H 0.96993 * 120.00327 * 0.02562 * 9 8 7 40 40 H 1.09002 * 109.63018 * 248.51866 * 13 12 10 41 41 H 1.09001 * 109.63196 * 9.10190 * 13 12 10 42 42 H 1.08993 * 109.65015 * 294.08090 * 14 13 12 43 43 H 1.09000 * 109.42046 * 173.94552 * 14 13 12 44 44 H 1.09002 * 109.47044 * 54.30158 * 16 15 14 45 45 H 1.08998 * 109.47782 * 174.29998 * 16 15 14 46 46 H 0.96999 * 119.99180 * 180.02562 * 20 19 17 47 47 H 1.08997 * 109.49477 * 303.14367 * 25 15 14 48 48 H 1.08997 * 109.49313 * 183.05854 * 25 15 14 49 49 H 1.09003 * 109.62597 * 350.89567 * 26 12 10 50 50 H 1.08993 * 109.63151 * 111.47962 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1788 2.6097 0.0012 6 8 3.5724 3.6600 0.0018 7 6 5.6858 2.6097 0.0013 8 6 6.1958 4.0522 0.0014 9 7 7.6608 4.0522 0.0021 10 6 8.3347 5.2194 0.0028 11 8 7.7304 6.2703 -0.0902 12 7 9.6789 5.2214 0.1012 13 6 10.4266 6.4840 0.2013 14 6 11.3725 6.3895 1.4090 15 7 12.2033 5.1849 1.2806 16 6 13.2405 5.1472 2.3201 17 6 14.2075 6.2831 2.1062 18 1 14.0660 6.9645 1.2804 19 6 15.2729 6.4525 2.9649 20 7 15.4450 5.6229 3.9709 21 14 16.4720 7.8600 2.6994 22 1 15.7431 9.1517 2.7730 23 1 17.5197 7.8228 3.7511 24 1 17.1060 7.7249 1.3633 25 6 11.3834 3.9663 1.3107 26 6 10.4374 3.9613 0.1051 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8932 -0.5139 0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6766 1.9564 -0.8900 34 1 3.9899 0.6025 0.0006 35 1 6.0492 2.0963 -0.8889 36 1 6.0491 2.0954 0.8910 37 1 5.8325 4.5659 0.8915 38 1 5.8325 4.5661 -0.8885 39 1 8.1458 3.2122 0.0020 40 1 11.0049 6.6403 -0.7093 41 1 9.7311 7.3112 0.3433 42 1 10.7892 6.3327 2.3279 43 1 12.0126 7.2713 1.4379 44 1 12.7755 5.2458 3.3010 45 1 13.7757 4.1993 2.2654 46 1 16.1943 5.7423 4.5752 47 1 10.7998 3.9433 2.2310 48 1 12.0312 3.0908 1.2682 49 1 9.7490 3.1198 0.1834 50 1 11.0167 3.8798 -0.8145 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601559352.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:49:34 Heat of formation + Delta-G solvation = -90.971497 kcal Electronic energy + Delta-G solvation = -27303.241950 eV Core-core repulsion = 23364.165241 eV Total energy + Delta-G solvation = -3939.076709 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.211 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.50852 -40.76814 -39.12225 -36.93144 -36.23518 -35.97154 -34.37801 -33.66196 -32.38669 -31.50676 -29.83675 -27.57002 -26.99988 -25.00742 -24.20860 -23.77760 -22.55713 -22.17943 -21.44617 -20.50103 -19.15347 -18.48268 -18.12405 -17.24139 -17.13528 -17.03752 -16.70768 -16.63412 -16.00519 -15.95545 -15.69994 -15.38128 -15.30190 -14.98933 -14.85197 -14.57090 -14.21895 -13.98261 -13.82125 -13.54207 -13.40181 -13.10536 -13.02248 -12.80203 -12.74283 -12.55722 -12.45574 -12.35914 -12.28452 -12.15571 -12.03154 -11.74899 -11.73935 -11.41453 -11.20928 -10.97039 -10.59584 -10.31254 -10.11433 -9.59749 -9.02253 -8.19411 -6.28876 1.43677 1.45939 1.48986 1.53777 1.60062 2.08182 2.22836 2.41943 2.91977 3.13172 3.25247 3.63801 3.90401 3.96547 4.01892 4.06211 4.07758 4.11349 4.18581 4.27722 4.35928 4.46489 4.52549 4.58244 4.65959 4.74347 4.77526 4.85549 4.86714 4.87721 4.92767 4.96590 5.04618 5.15800 5.18881 5.24903 5.25173 5.33883 5.41266 5.45896 5.48642 5.65267 5.92393 6.05330 6.27173 6.53547 6.60876 6.86441 6.93485 7.24488 7.40848 7.50537 8.91294 Molecular weight = 326.21amu Principal moments of inertia in cm(-1) A = 0.033035 B = 0.001716 C = 0.001666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.369956 B =16310.060373 C =16800.873960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C 0.114 3.886 4 N -0.716 5.716 5 C 0.512 3.488 6 O -0.590 6.590 7 C -0.137 4.137 8 C 0.156 3.844 9 N -0.730 5.730 10 C 0.703 3.297 11 O -0.637 6.637 12 N -0.628 5.628 13 C 0.145 3.855 14 C 0.058 3.942 15 N -0.538 5.538 16 C 0.209 3.791 17 C -0.525 4.525 18 H 0.065 0.935 19 C 0.004 3.996 20 N -0.934 5.934 21 Si 0.967 3.033 22 H -0.270 1.270 23 H -0.285 1.285 24 H -0.267 1.267 25 C 0.036 3.964 26 C 0.126 3.874 27 H 0.054 0.946 28 H 0.070 0.930 29 H 0.053 0.947 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.052 0.948 33 H 0.054 0.946 34 H 0.420 0.580 35 H 0.138 0.862 36 H 0.133 0.867 37 H 0.044 0.956 38 H 0.050 0.950 39 H 0.413 0.587 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.008 0.992 43 H 0.079 0.921 44 H -0.042 1.042 45 H 0.013 0.987 46 H 0.264 0.736 47 H 0.019 0.981 48 H 0.092 0.908 49 H 0.116 0.884 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.023 -17.755 -10.151 31.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.010 4.010 4 N -0.369 5.369 5 C 0.299 3.701 6 O -0.471 6.471 7 C -0.177 4.177 8 C 0.031 3.969 9 N -0.389 5.389 10 C 0.404 3.596 11 O -0.519 6.519 12 N -0.365 5.365 13 C 0.021 3.979 14 C -0.072 4.072 15 N -0.262 5.262 16 C 0.083 3.917 17 C -0.563 4.563 18 H 0.083 0.917 19 C -0.194 4.194 20 N -0.574 5.574 21 Si 0.791 3.209 22 H -0.195 1.195 23 H -0.210 1.210 24 H -0.191 1.191 25 C -0.093 4.093 26 C 0.004 3.996 27 H 0.073 0.927 28 H 0.089 0.911 29 H 0.072 0.928 30 H 0.100 0.900 31 H 0.098 0.902 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.258 0.742 35 H 0.156 0.844 36 H 0.151 0.849 37 H 0.063 0.937 38 H 0.069 0.931 39 H 0.253 0.747 40 H 0.098 0.902 41 H 0.100 0.900 42 H 0.027 0.973 43 H 0.097 0.903 44 H -0.025 1.025 45 H 0.031 0.969 46 H 0.073 0.927 47 H 0.037 0.963 48 H 0.111 0.889 49 H 0.133 0.867 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -24.572 -16.320 -10.512 31.315 hybrid contribution 0.776 0.248 1.296 1.531 sum -23.796 -16.073 -9.216 30.158 Atomic orbital electron populations 1.21711 0.94607 1.02741 1.02051 1.21676 0.96906 0.93873 1.03858 1.21444 0.79518 0.98785 1.01240 1.45890 1.07524 1.08790 1.74713 1.20870 0.90787 0.83471 0.74949 1.90760 1.71631 1.33328 1.51348 1.21742 0.90619 0.96854 1.08475 1.20706 0.77653 0.97011 1.01489 1.44963 1.06893 1.07007 1.80042 1.15991 0.81535 0.84412 0.77661 1.90883 1.68481 1.32629 1.59912 1.47419 1.03731 1.08775 1.76541 1.21583 0.92751 0.85593 0.97998 1.22352 0.94181 0.95093 0.95534 1.61995 1.13093 1.01713 1.49430 1.19372 0.89079 0.96641 0.86653 1.21455 1.09894 1.12842 1.12127 0.91706 1.25866 0.99725 0.99124 0.94720 1.70073 1.31446 1.39009 1.16870 0.85476 0.78173 0.79211 0.78005 1.19550 1.21026 1.19146 1.22557 0.95565 0.94163 0.97012 1.21909 0.93926 0.85092 0.98711 0.92684 0.91123 0.92800 0.90014 0.90174 0.92995 0.92795 0.74213 0.84436 0.84876 0.93726 0.93110 0.74675 0.90160 0.90022 0.97330 0.90298 1.02455 0.96861 0.92750 0.96274 0.88941 0.86654 0.89299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.91 71.98 0.71 -0.11 16 2 C -0.13 -0.57 6.05 30.59 0.19 -0.38 16 3 C 0.11 1.21 5.67 86.38 0.49 1.70 16 4 N -0.72 -6.39 5.56 -463.05 -2.57 -8.96 16 5 C 0.51 8.13 7.83 87.66 0.69 8.82 16 6 O -0.59 -16.29 15.98 -3.04 -0.05 -16.34 16 7 C -0.14 -1.29 5.81 29.85 0.17 -1.11 16 8 C 0.16 3.23 4.97 86.38 0.43 3.66 16 9 N -0.73 -14.78 5.47 -478.54 -2.62 -17.39 16 10 C 0.70 21.52 8.31 179.05 1.49 23.00 16 11 O -0.64 -25.64 15.83 -3.97 -0.06 -25.70 16 12 N -0.63 -18.29 3.00 -835.04 -2.51 -20.79 16 13 C 0.14 4.81 6.61 86.50 0.57 5.38 16 14 C 0.06 2.27 5.47 86.54 0.47 2.74 16 15 N -0.54 -21.99 4.62 -898.90 -4.15 -26.14 16 16 C 0.21 10.77 4.72 85.56 0.40 11.18 16 17 C -0.52 -29.08 8.41 25.60 0.22 -28.87 16 18 H 0.06 3.51 7.13 -2.91 -0.02 3.48 16 19 C 0.00 0.21 5.46 84.65 0.46 0.68 16 20 N -0.93 -55.36 13.29 21.45 0.28 -55.08 16 21 Si 0.97 43.80 29.54 68.60 2.03 45.83 16 22 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 23 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 24 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 25 C 0.04 1.12 5.62 86.38 0.49 1.60 16 26 C 0.13 2.83 6.59 86.35 0.57 3.40 16 27 H 0.05 0.34 8.14 -2.39 -0.02 0.32 16 28 H 0.07 0.26 8.14 -2.38 -0.02 0.24 16 29 H 0.05 0.34 8.14 -2.39 -0.02 0.33 16 30 H 0.08 0.20 8.14 -2.39 -0.02 0.18 16 31 H 0.08 0.23 8.14 -2.39 -0.02 0.21 16 32 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.42 0.54 8.47 -92.71 -0.79 -0.25 16 35 H 0.14 0.38 8.14 -2.39 -0.02 0.36 16 36 H 0.13 0.50 8.14 -2.39 -0.02 0.48 16 37 H 0.04 1.19 8.10 -2.39 -0.02 1.17 16 38 H 0.05 1.31 8.10 -2.39 -0.02 1.29 16 39 H 0.41 4.94 5.97 -92.71 -0.55 4.38 16 40 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 41 H 0.08 2.85 7.09 -2.39 -0.02 2.84 16 42 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 43 H 0.08 3.35 6.67 -2.39 -0.02 3.34 16 44 H -0.04 -2.42 8.12 -2.39 -0.02 -2.44 16 45 H 0.01 0.73 7.97 -2.39 -0.02 0.71 16 46 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 47 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 48 H 0.09 2.66 7.99 -2.39 -0.02 2.64 16 49 H 0.12 1.51 5.64 -2.39 -0.01 1.50 16 50 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -82.72 401.44 -2.71 -85.43 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -0.40 Total: 7.47 kcal Atomic # 6 Polarization: 24.34 SS G_CDS: 7.35 Total: 31.69 kcal Atomic # 7 Polarization: -116.80 SS G_CDS: -11.57 Total: -128.37 kcal Atomic # 8 Polarization: -41.93 SS G_CDS: -0.11 Total: -42.04 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -82.72 -2.71 -85.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601559352.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.544 kcal (2) G-P(sol) polarization free energy of solvation -82.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds