Wall clock time and date at job start Fri Apr 10 2020 14:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47107 * 2 1 4 4 N 1.46492 * 109.47252 * 179.97438 * 3 2 1 5 5 C 1.34773 * 120.00398 * 180.02562 * 4 3 2 6 6 O 1.21285 * 119.99698 * 359.97438 * 5 4 3 7 7 C 1.50703 * 120.00558 * 180.02562 * 5 4 3 8 8 C 1.52998 * 109.47117 * 179.97438 * 7 5 4 9 9 N 1.46502 * 109.47083 * 179.97438 * 8 7 5 10 10 C 1.34779 * 120.00207 * 179.97438 * 9 8 7 11 11 O 1.21587 * 119.99510 * 0.02562 * 10 9 8 12 12 N 1.34775 * 119.99840 * 180.02562 * 10 9 8 13 13 C 1.46503 * 119.99376 * 180.02562 * 12 10 9 14 14 C 1.53065 * 109.44591 * 84.79556 * 13 12 10 15 15 C 1.53192 * 109.29648 * 181.23295 * 14 13 12 16 16 N 1.46922 * 108.89269 * 305.57538 * 15 14 13 17 17 C 1.36942 * 120.62796 * 233.51528 * 16 15 14 18 18 H 1.08007 * 119.99636 * 151.83092 * 17 16 15 19 19 C 1.38806 * 120.00203 * 331.83144 * 17 16 15 20 20 N 1.31624 * 120.00191 * 343.08250 * 19 17 16 21 21 Si 1.86800 * 120.00146 * 163.07925 * 19 17 16 22 22 H 1.48503 * 109.47195 * 89.99708 * 21 19 17 23 23 H 1.48498 * 109.47355 * 210.00264 * 21 19 17 24 24 H 1.48504 * 109.46850 * 330.00278 * 21 19 17 25 25 C 1.46924 * 118.73925 * 53.53382 * 16 15 14 26 26 C 1.53049 * 109.45272 * 204.99544 * 13 12 10 27 27 H 1.09004 * 109.46624 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47208 * 299.99895 * 1 2 3 29 29 H 1.09000 * 109.47296 * 60.00301 * 1 2 3 30 30 H 1.08995 * 109.47460 * 239.99414 * 2 1 3 31 31 H 1.09000 * 109.47296 * 119.99699 * 2 1 3 32 32 H 1.09000 * 109.47001 * 59.99978 * 3 2 1 33 33 H 1.09000 * 109.46797 * 300.00005 * 3 2 1 34 34 H 0.97007 * 120.00272 * 0.02562 * 4 3 2 35 35 H 1.09000 * 109.47001 * 59.99935 * 7 5 4 36 36 H 1.08999 * 109.46696 * 299.99863 * 7 5 4 37 37 H 1.09000 * 109.47157 * 60.00129 * 8 7 5 38 38 H 1.08999 * 109.47306 * 299.99588 * 8 7 5 39 39 H 0.96995 * 119.99680 * 0.02562 * 9 8 7 40 40 H 0.96995 * 120.00047 * 359.97438 * 12 10 9 41 41 H 1.08996 * 109.45813 * 324.96250 * 13 12 10 42 42 H 1.09005 * 109.39523 * 61.35360 * 14 13 12 43 43 H 1.09004 * 109.62174 * 301.25047 * 14 13 12 44 44 H 1.09003 * 109.58615 * 185.71531 * 15 14 13 45 45 H 1.08998 * 109.58372 * 65.43477 * 15 14 13 46 46 H 0.96995 * 120.00379 * 180.02562 * 20 19 17 47 47 H 1.09007 * 109.58325 * 66.18371 * 25 16 15 48 48 H 1.08996 * 109.58499 * 186.46256 * 25 16 15 49 49 H 1.09002 * 109.49883 * 58.67895 * 26 13 12 50 50 H 1.08997 * 109.52642 * 298.59203 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1788 2.6097 0.0012 6 8 3.5724 3.6601 0.0008 7 6 5.6859 2.6098 0.0013 8 6 6.1958 4.0523 0.0014 9 7 7.6608 4.0524 0.0021 10 6 8.3347 5.2196 0.0018 11 8 7.7266 6.2725 0.0014 12 7 9.6824 5.2196 0.0019 13 6 10.4148 6.4884 0.0021 14 6 10.5561 6.9950 1.4396 15 6 11.2952 8.3367 1.4332 16 7 12.5693 8.1746 0.7197 17 6 13.7501 8.5418 1.3082 18 1 14.6682 8.0438 1.0333 19 6 13.7670 9.5538 2.2580 20 7 12.7466 10.3792 2.3585 21 14 15.2378 9.7445 3.3937 22 1 16.2313 10.6541 2.7685 23 1 14.7915 10.3148 4.6902 24 1 15.8598 8.4161 3.6253 25 6 12.5525 7.6114 -0.6372 26 6 11.8025 6.2760 -0.6076 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6766 1.9563 -0.8900 34 1 3.9900 0.6025 0.0006 35 1 6.0492 2.0964 -0.8889 36 1 6.0491 2.0955 0.8911 37 1 5.8324 4.5660 0.8914 38 1 5.8325 4.5662 -0.8885 39 1 8.1458 3.2124 0.0020 40 1 10.1674 4.3796 0.0025 41 1 9.8676 7.2236 -0.5878 42 1 11.1225 6.2704 2.0247 43 1 9.5677 7.1261 1.8803 44 1 11.4881 8.6526 2.4584 45 1 10.6865 9.0868 0.9282 46 1 12.7585 11.0866 3.0220 47 1 12.0453 8.3006 -1.3125 48 1 13.5750 7.4511 -0.9789 49 1 11.6990 5.8943 -1.6233 50 1 12.3596 5.5592 -0.0045 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609336580.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:49:42 Heat of formation + Delta-G solvation = -63.099964 kcal Electronic energy + Delta-G solvation = -27169.777811 eV Core-core repulsion = 23231.909702 eV Total energy + Delta-G solvation = -3937.868108 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.211 amu Computer time = 2.26 seconds Orbital eigenvalues (eV) -40.28028 -39.73204 -37.48886 -36.36283 -35.14692 -34.26224 -33.17825 -32.19163 -30.98457 -29.89585 -29.19913 -26.86360 -25.02907 -23.70806 -22.20510 -22.16655 -21.84243 -20.85760 -20.43728 -19.39293 -18.13190 -17.34372 -16.78847 -16.56262 -16.44183 -15.93809 -15.78488 -14.94209 -14.81637 -14.48396 -14.11724 -13.91583 -13.88052 -13.63153 -13.44190 -13.41403 -12.94695 -12.89601 -12.65060 -12.53760 -12.28911 -12.12994 -11.77300 -11.71282 -11.46515 -11.42965 -11.07286 -10.88156 -10.67985 -10.32952 -10.30587 -10.20718 -10.03528 -9.90669 -9.70282 -9.55091 -9.49992 -9.10475 -8.55991 -8.33676 -6.63254 -5.74148 -3.17254 2.24727 2.50355 3.03389 3.40214 3.46506 3.47115 3.49108 4.19174 4.28266 4.38531 4.44949 4.52978 4.58450 4.67272 4.68253 5.01341 5.05447 5.06259 5.23253 5.35969 5.44546 5.45071 5.51424 5.53660 5.63728 5.67032 5.71783 5.81807 5.90027 5.96815 6.15283 6.29538 6.43099 6.45042 6.52059 6.65510 6.70865 6.82670 6.96222 6.99606 7.01941 7.17038 7.45123 7.74815 7.80236 7.83614 8.21119 8.49689 8.84387 9.25453 9.88969 10.45977 11.34359 Molecular weight = 326.21amu Principal moments of inertia in cm(-1) A = 0.035793 B = 0.001641 C = 0.001616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.095162 B =17059.219654 C =17317.521360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.135 4.135 3 C 0.116 3.884 4 N -0.735 5.735 5 C 0.516 3.484 6 O -0.530 6.530 7 C -0.152 4.152 8 C 0.155 3.845 9 N -0.755 5.755 10 C 0.701 3.299 11 O -0.584 6.584 12 N -0.740 5.740 13 C 0.168 3.832 14 C -0.147 4.147 15 C 0.173 3.827 16 N -0.592 5.592 17 C -0.255 4.255 18 H 0.065 0.935 19 C 0.003 3.997 20 N -0.901 5.901 21 Si 0.901 3.099 22 H -0.287 1.287 23 H -0.290 1.290 24 H -0.280 1.280 25 C 0.148 3.852 26 C -0.138 4.138 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.401 0.599 35 H 0.100 0.900 36 H 0.101 0.899 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.392 0.608 40 H 0.389 0.611 41 H 0.081 0.919 42 H 0.052 0.948 43 H 0.054 0.946 44 H 0.088 0.912 45 H 0.021 0.979 46 H 0.254 0.746 47 H 0.020 0.980 48 H 0.058 0.942 49 H 0.054 0.946 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.106 -26.160 -5.903 32.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.173 4.173 3 C -0.008 4.008 4 N -0.388 5.388 5 C 0.302 3.698 6 O -0.405 6.405 7 C -0.193 4.193 8 C 0.030 3.970 9 N -0.412 5.412 10 C 0.401 3.599 11 O -0.461 6.461 12 N -0.394 5.394 13 C 0.065 3.935 14 C -0.187 4.187 15 C 0.047 3.953 16 N -0.315 5.315 17 C -0.385 4.385 18 H 0.083 0.917 19 C -0.196 4.196 20 N -0.545 5.545 21 Si 0.731 3.269 22 H -0.214 1.214 23 H -0.216 1.216 24 H -0.205 1.205 25 C 0.021 3.979 26 C -0.178 4.178 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.235 0.765 35 H 0.118 0.882 36 H 0.119 0.881 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.225 0.775 40 H 0.222 0.778 41 H 0.099 0.901 42 H 0.071 0.929 43 H 0.072 0.928 44 H 0.106 0.894 45 H 0.039 0.961 46 H 0.064 0.936 47 H 0.038 0.962 48 H 0.076 0.924 49 H 0.073 0.927 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -19.143 -24.203 -5.790 31.397 hybrid contribution 1.353 -1.228 0.662 1.943 sum -17.791 -25.430 -5.127 31.456 Atomic orbital electron populations 1.21685 0.94443 1.02248 1.02488 1.21735 0.97144 0.95737 1.02721 1.21430 0.79412 0.97217 1.02693 1.46016 1.07501 1.08690 1.76567 1.20440 0.89801 0.83653 0.75898 1.90783 1.70378 1.31130 1.48250 1.21812 0.92543 0.99814 1.05100 1.20777 0.78336 0.93940 1.03988 1.45083 1.06752 1.07372 1.82008 1.15972 0.82128 0.83870 0.77954 1.90958 1.67804 1.30139 1.57224 1.45514 1.04141 1.10223 1.79477 1.20911 0.91228 0.83408 0.98003 1.22579 1.00078 1.01067 0.94986 1.20754 0.84923 0.90251 0.99370 1.44099 1.03654 1.73035 1.10735 1.19159 0.86943 1.12985 1.19373 0.91710 1.25060 0.97511 0.95372 1.01636 1.70038 1.31393 1.17164 1.35878 0.86321 0.82296 0.77734 0.80537 1.21402 1.21585 1.20538 1.20838 0.97629 0.91061 0.88361 1.22333 0.95167 1.01123 0.99148 0.92120 0.92249 0.92269 0.91294 0.91275 0.91350 0.91363 0.76522 0.88155 0.88109 0.90792 0.90841 0.77503 0.77811 0.90093 0.92873 0.92765 0.89356 0.96107 0.93587 0.96189 0.92378 0.92690 0.91948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.49 9.91 37.16 0.37 -0.12 16 2 C -0.14 -0.43 6.05 -26.73 -0.16 -0.59 16 3 C 0.12 0.66 5.67 -4.04 -0.02 0.64 16 4 N -0.73 -3.99 5.56 -60.30 -0.33 -4.32 16 5 C 0.52 4.45 7.83 -10.99 -0.09 4.36 16 6 O -0.53 -7.22 15.98 5.55 0.09 -7.13 16 7 C -0.15 -0.92 5.81 -27.88 -0.16 -1.09 16 8 C 0.15 1.68 4.96 -4.04 -0.02 1.66 16 9 N -0.75 -8.11 5.56 -65.23 -0.36 -8.47 16 10 C 0.70 11.07 8.53 -86.92 -0.74 10.33 16 11 O -0.58 -12.28 16.01 5.29 0.08 -12.20 16 12 N -0.74 -10.66 5.08 -58.62 -0.30 -10.95 16 13 C 0.17 3.04 2.41 -67.87 -0.16 2.87 16 14 C -0.15 -3.03 5.66 -26.60 -0.15 -3.18 16 15 C 0.17 4.34 5.30 -3.71 -0.02 4.32 16 16 N -0.59 -15.03 3.00 -172.32 -0.52 -15.55 16 17 C -0.25 -7.04 9.58 -15.06 -0.14 -7.19 16 18 H 0.07 1.74 7.89 -52.48 -0.41 1.32 16 19 C 0.00 0.08 4.92 -17.43 -0.09 0.00 16 20 N -0.90 -26.72 11.20 55.49 0.62 -26.09 16 21 Si 0.90 21.83 29.59 -169.99 -5.03 16.80 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 C 0.15 3.10 6.52 -3.71 -0.02 3.07 16 26 C -0.14 -2.32 5.55 -26.61 -0.15 -2.46 16 27 H 0.06 0.16 8.14 -51.93 -0.42 -0.26 16 28 H 0.06 0.21 8.14 -51.93 -0.42 -0.22 16 29 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.07 0.18 8.14 -51.93 -0.42 -0.25 16 31 H 0.07 0.18 8.14 -51.93 -0.42 -0.24 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.40 0.90 8.47 -40.82 -0.35 0.56 16 35 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.07 0.99 8.10 -51.93 -0.42 0.57 16 38 H 0.07 0.96 8.10 -51.93 -0.42 0.54 16 39 H 0.39 2.67 8.49 -40.82 -0.35 2.32 16 40 H 0.39 4.23 8.62 -40.82 -0.35 3.88 16 41 H 0.08 1.67 7.58 -51.93 -0.39 1.28 16 42 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 44 H 0.09 2.46 6.06 -51.93 -0.31 2.14 16 45 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 47 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 49 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 50 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 403.66 15.07 6.08 6.08 Total: -1.00 -36.91 403.66 -10.12 -47.03 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -8.90 Total: 2.19 kcal Atomic # 6 Polarization: 14.18 SS G_CDS: -1.56 Total: 12.62 kcal Atomic # 7 Polarization: -64.50 SS G_CDS: -0.89 Total: -65.39 kcal Atomic # 8 Polarization: -19.50 SS G_CDS: 0.17 Total: -19.33 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.03 Total: 16.80 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -36.91 -10.12 -47.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609336580.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.072 kcal (2) G-P(sol) polarization free energy of solvation -36.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.26 seconds