Wall clock time and date at job start Fri Apr 10 2020 14:49:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53006 * 109.47214 * 2 1 4 4 N 1.46508 * 109.47406 * 119.99524 * 2 1 3 5 5 C 1.34780 * 119.99498 * 85.00000 * 4 2 1 6 6 O 1.21275 * 119.99972 * 0.02562 * 5 4 2 7 7 C 1.50697 * 119.99784 * 180.02562 * 5 4 2 8 8 C 1.52996 * 109.47229 * 179.97438 * 7 5 4 9 9 N 1.46505 * 109.47308 * 179.97438 * 8 7 5 10 10 C 1.34773 * 120.00225 * 179.97438 * 9 8 7 11 11 O 1.21587 * 119.99684 * 0.02562 * 10 9 8 12 12 N 1.34774 * 120.00300 * 180.02562 * 10 9 8 13 13 C 1.46498 * 120.00360 * 180.02562 * 12 10 9 14 14 C 1.53071 * 109.44009 * 84.79625 * 13 12 10 15 15 C 1.53201 * 109.29371 * 181.23934 * 14 13 12 16 16 N 1.46928 * 108.89275 * 305.57634 * 15 14 13 17 17 C 1.36934 * 120.63265 * 233.51651 * 16 15 14 18 18 H 1.07997 * 119.99862 * 151.82898 * 17 16 15 19 19 C 1.38806 * 120.00015 * 331.83027 * 17 16 15 20 20 N 1.31624 * 120.00191 * 343.08772 * 19 17 16 21 21 Si 1.86800 * 120.00146 * 163.08448 * 19 17 16 22 22 H 1.48503 * 109.47142 * 60.00161 * 21 19 17 23 23 H 1.48498 * 109.47084 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47267 * 300.00095 * 21 19 17 25 25 C 1.46932 * 118.73342 * 53.53882 * 16 15 14 26 26 C 1.53045 * 109.46092 * 205.00269 * 13 12 10 27 27 H 1.09003 * 109.47317 * 60.00231 * 1 2 3 28 28 H 1.09003 * 109.46877 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47076 * 300.00037 * 1 2 3 30 30 H 1.08994 * 109.47567 * 239.99584 * 2 1 3 31 31 H 1.09000 * 109.46763 * 180.02562 * 3 2 1 32 32 H 1.08994 * 109.46770 * 299.99492 * 3 2 1 33 33 H 1.08995 * 109.46844 * 59.99769 * 3 2 1 34 34 H 0.96995 * 120.00343 * 265.00357 * 4 2 1 35 35 H 1.09006 * 109.47413 * 59.99664 * 7 5 4 36 36 H 1.09006 * 109.47342 * 300.00079 * 7 5 4 37 37 H 1.09000 * 109.46942 * 60.00417 * 8 7 5 38 38 H 1.08997 * 109.47369 * 299.99810 * 8 7 5 39 39 H 0.97005 * 119.99867 * 0.02562 * 9 8 7 40 40 H 0.97005 * 119.99791 * 0.02562 * 12 10 9 41 41 H 1.08998 * 109.45866 * 324.97703 * 13 12 10 42 42 H 1.09002 * 109.39343 * 61.36176 * 14 13 12 43 43 H 1.09003 * 109.62467 * 301.25403 * 14 13 12 44 44 H 1.09000 * 109.58250 * 185.72113 * 15 14 13 45 45 H 1.08995 * 109.58477 * 65.43833 * 15 14 13 46 46 H 0.96995 * 120.00379 * 180.02562 * 20 19 17 47 47 H 1.08996 * 109.59017 * 66.18099 * 25 16 15 48 48 H 1.09009 * 109.58200 * 186.46074 * 25 16 15 49 49 H 1.09002 * 109.49555 * 58.67538 * 26 13 12 50 50 H 1.08992 * 109.52043 * 298.59539 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6905 1.1963 5 6 2.1471 -2.0322 1.1945 6 8 1.8590 -2.6676 0.2025 7 6 2.6489 -2.7426 2.4251 8 6 2.6999 -4.2485 2.1596 9 7 3.1884 -4.9390 3.3557 10 6 3.3162 -6.2807 3.3543 11 8 3.0266 -6.9179 2.3601 12 7 3.7651 -6.9161 4.4549 13 6 3.9046 -8.3744 4.4532 14 6 5.2602 -8.7558 3.8533 15 6 5.3897 -10.2820 3.8246 16 7 5.1572 -10.8047 5.1780 17 6 6.0727 -11.6303 5.7739 18 1 6.1612 -11.6510 6.8501 19 6 6.8871 -12.4406 4.9949 20 7 6.5739 -12.6746 3.7381 21 14 8.4278 -13.1990 5.7302 22 1 8.0544 -14.0636 6.8784 23 1 9.1182 -14.0150 4.6994 24 1 9.3359 -12.1208 6.1972 25 6 3.9232 -10.4250 5.8794 26 6 3.8113 -8.8972 5.8886 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9563 0.8899 34 1 2.2490 -0.1822 1.9895 35 1 1.9761 -2.5437 3.2593 36 1 3.6481 -2.3825 2.6705 37 1 3.3726 -4.4477 1.3254 38 1 1.7006 -4.6083 1.9145 39 1 3.4191 -4.4307 4.1491 40 1 3.9958 -6.4077 5.2482 41 1 3.1078 -8.8147 3.8538 42 1 6.0581 -8.3343 4.4648 43 1 5.3343 -8.3653 2.8383 44 1 6.3910 -10.5575 3.4936 45 1 4.6510 -10.6986 3.1400 46 1 7.1428 -13.2411 3.1938 47 1 3.0632 -10.8513 5.3629 48 1 3.9558 -10.7972 6.9035 49 1 2.8542 -8.6050 6.3206 50 1 4.6223 -8.4765 6.4828 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609337378.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:49:45 Heat of formation + Delta-G solvation = -88.957725 kcal Electronic energy + Delta-G solvation = -27453.222221 eV Core-core repulsion = 23514.232836 eV Total energy + Delta-G solvation = -3938.989385 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.211 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.28783 -40.79996 -39.10903 -37.14799 -36.28091 -35.83519 -33.95404 -32.98291 -31.87815 -31.47842 -30.50654 -28.09773 -26.95715 -25.23481 -23.89257 -23.55284 -22.18028 -21.89758 -21.40849 -21.04885 -19.39825 -18.64713 -18.18880 -17.30219 -17.15122 -16.92852 -16.72827 -16.14906 -15.81916 -15.50093 -15.34069 -15.22027 -15.16178 -14.78690 -14.71535 -14.57904 -14.22221 -13.98678 -13.78055 -13.23172 -13.17301 -13.06198 -12.99004 -12.81886 -12.65325 -12.54745 -12.46862 -12.29420 -12.10735 -12.06202 -11.91230 -11.84639 -11.52380 -11.45718 -11.23027 -10.92101 -10.56425 -10.33058 -10.11665 -9.72745 -8.69905 -7.85655 -5.32527 1.48461 1.51311 1.58151 1.59278 1.62744 2.18723 2.30264 2.53140 3.28007 3.36041 3.65783 3.69504 3.89669 3.90878 4.06937 4.10039 4.12613 4.17680 4.32852 4.37096 4.49924 4.53284 4.69201 4.74010 4.76261 4.82409 4.84676 4.87104 4.93782 4.96301 5.04436 5.08633 5.11289 5.15777 5.26849 5.32434 5.34108 5.44332 5.48800 5.56503 5.62511 5.65584 5.70929 6.08475 6.39909 6.57611 7.14431 7.19552 7.28979 7.65244 7.85796 8.39112 9.21347 Molecular weight = 326.21amu Principal moments of inertia in cm(-1) A = 0.034324 B = 0.001732 C = 0.001708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.567727 B =16161.830233 C =16385.098247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.129 3.871 3 C -0.151 4.151 4 N -0.712 5.712 5 C 0.512 3.488 6 O -0.590 6.590 7 C -0.135 4.135 8 C 0.157 3.843 9 N -0.726 5.726 10 C 0.695 3.305 11 O -0.643 6.643 12 N -0.721 5.721 13 C 0.180 3.820 14 C -0.130 4.130 15 C 0.182 3.818 16 N -0.608 5.608 17 C -0.263 4.263 18 H 0.076 0.924 19 C -0.056 4.056 20 N -0.940 5.940 21 Si 0.971 3.029 22 H -0.272 1.272 23 H -0.299 1.299 24 H -0.276 1.276 25 C 0.140 3.860 26 C -0.118 4.118 27 H 0.074 0.926 28 H 0.031 0.969 29 H 0.072 0.928 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.419 0.581 35 H 0.137 0.863 36 H 0.135 0.865 37 H 0.042 0.958 38 H 0.045 0.955 39 H 0.418 0.582 40 H 0.413 0.587 41 H 0.051 0.949 42 H 0.063 0.937 43 H 0.040 0.960 44 H 0.054 0.946 45 H -0.014 1.014 46 H 0.249 0.751 47 H 0.009 0.991 48 H 0.070 0.930 49 H 0.092 0.908 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.246 33.859 3.085 35.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.025 3.975 3 C -0.209 4.209 4 N -0.365 5.365 5 C 0.299 3.701 6 O -0.470 6.470 7 C -0.175 4.175 8 C 0.031 3.969 9 N -0.384 5.384 10 C 0.395 3.605 11 O -0.524 6.524 12 N -0.377 5.377 13 C 0.074 3.926 14 C -0.171 4.171 15 C 0.056 3.944 16 N -0.332 5.332 17 C -0.393 4.393 18 H 0.093 0.907 19 C -0.251 4.251 20 N -0.586 5.586 21 Si 0.799 3.201 22 H -0.197 1.197 23 H -0.225 1.225 24 H -0.202 1.202 25 C 0.014 3.986 26 C -0.158 4.158 27 H 0.093 0.907 28 H 0.051 0.949 29 H 0.091 0.909 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.257 0.743 35 H 0.155 0.845 36 H 0.153 0.847 37 H 0.060 0.940 38 H 0.064 0.936 39 H 0.255 0.745 40 H 0.250 0.750 41 H 0.069 0.931 42 H 0.082 0.918 43 H 0.059 0.941 44 H 0.073 0.927 45 H 0.004 0.996 46 H 0.058 0.942 47 H 0.027 0.973 48 H 0.088 0.912 49 H 0.111 0.889 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -9.648 32.770 1.393 34.189 hybrid contribution 0.999 -0.541 0.382 1.199 sum -8.649 32.229 1.774 33.416 Atomic orbital electron populations 1.22152 0.95139 1.01191 1.03380 1.20998 0.94343 0.94165 0.88024 1.22015 1.01794 0.92915 1.04179 1.46003 1.66790 1.06154 1.17574 1.20910 0.76758 0.83004 0.89471 1.90763 1.51856 1.67108 1.37264 1.21731 1.06583 0.92179 0.96969 1.20666 0.98717 0.91221 0.86269 1.44739 1.71689 1.04101 1.17918 1.16228 0.78241 0.82628 0.83409 1.90936 1.58940 1.67101 1.35403 1.45030 1.70221 1.07401 1.15008 1.20508 0.95992 0.78457 0.97648 1.22323 0.97818 0.97600 0.99313 1.20456 0.98970 0.89354 0.85665 1.44332 1.19354 1.54470 1.15021 1.19561 1.12502 1.15256 0.91937 0.90663 1.25908 1.03697 0.98499 0.96948 1.70216 1.38700 1.40630 1.09066 0.85287 0.79651 0.77994 0.77186 1.19740 1.22532 1.20159 1.21068 0.87569 0.93317 0.96648 1.22115 1.03146 0.96543 0.93966 0.90685 0.94925 0.90856 0.92245 0.91756 0.90301 0.90253 0.74336 0.84520 0.84722 0.93994 0.93644 0.74464 0.74974 0.93086 0.91827 0.94109 0.92745 0.99610 0.94231 0.97269 0.91159 0.88927 0.90299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.73 9.48 71.98 0.68 -1.05 16 2 C 0.13 1.37 3.18 44.99 0.14 1.52 16 3 C -0.15 -0.63 9.38 71.98 0.68 0.05 16 4 N -0.71 -6.34 5.08 -442.53 -2.25 -8.59 16 5 C 0.51 8.23 7.79 87.66 0.68 8.92 16 6 O -0.59 -16.61 15.64 -3.01 -0.05 -16.66 16 7 C -0.13 -1.25 5.81 29.85 0.17 -1.07 16 8 C 0.16 3.32 4.96 86.38 0.43 3.75 16 9 N -0.73 -13.96 5.56 -478.54 -2.66 -16.62 16 10 C 0.70 21.23 8.53 179.06 1.53 22.76 16 11 O -0.64 -27.82 16.01 -3.99 -0.06 -27.88 16 12 N -0.72 -19.00 5.08 -457.64 -2.33 -21.32 16 13 C 0.18 6.29 2.41 45.03 0.11 6.40 16 14 C -0.13 -5.44 5.66 30.69 0.17 -5.26 16 15 C 0.18 9.51 5.30 86.37 0.46 9.97 16 16 N -0.61 -31.09 3.00 -699.07 -2.09 -33.18 16 17 C -0.26 -14.47 9.58 84.03 0.81 -13.67 16 18 H 0.08 3.92 7.88 -2.91 -0.02 3.90 16 19 C -0.06 -3.16 4.92 84.86 0.42 -2.74 16 20 N -0.94 -57.92 11.20 21.65 0.24 -57.68 16 21 Si 0.97 45.33 29.59 68.60 2.03 47.36 16 22 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 23 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 24 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 25 C 0.14 5.68 6.52 86.36 0.56 6.24 16 26 C -0.12 -3.62 5.55 30.67 0.17 -3.45 16 27 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.06 1.00 7.58 -2.39 -0.02 0.98 16 31 H 0.06 0.27 8.14 -2.39 -0.02 0.25 16 32 H 0.08 0.27 8.14 -2.39 -0.02 0.25 16 33 H 0.08 0.08 8.14 -2.39 -0.02 0.06 16 34 H 0.42 0.48 8.60 -92.71 -0.80 -0.32 16 35 H 0.14 0.35 8.14 -2.38 -0.02 0.33 16 36 H 0.13 0.42 8.14 -2.38 -0.02 0.40 16 37 H 0.04 1.17 8.10 -2.39 -0.02 1.15 16 38 H 0.05 1.23 8.10 -2.39 -0.02 1.21 16 39 H 0.42 3.83 8.49 -92.70 -0.79 3.05 16 40 H 0.41 7.12 8.62 -92.70 -0.80 6.32 16 41 H 0.05 2.14 7.58 -2.39 -0.02 2.12 16 42 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 43 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 44 H 0.05 3.19 6.06 -2.39 -0.01 3.17 16 45 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 46 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 47 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 48 H 0.07 2.67 7.93 -2.38 -0.02 2.65 16 49 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 50 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -87.65 402.79 -1.59 -89.24 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -1.44 Total: 13.00 kcal Atomic # 6 Polarization: 25.34 SS G_CDS: 7.01 Total: 32.35 kcal Atomic # 7 Polarization: -128.31 SS G_CDS: -9.08 Total: -137.40 kcal Atomic # 8 Polarization: -44.43 SS G_CDS: -0.11 Total: -44.54 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -87.65 -1.59 -89.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609337378.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.281 kcal (2) G-P(sol) polarization free energy of solvation -87.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds