Wall clock time and date at job start Fri Apr 10 2020 14:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.46862 * 2 1 4 4 H 1.08996 * 109.46925 * 304.95335 * 3 2 1 5 5 C 1.50707 * 109.46900 * 184.95053 * 3 2 1 6 6 O 1.21280 * 120.00107 * 259.99698 * 5 3 2 7 7 N 1.34775 * 119.99816 * 80.00519 * 5 3 2 8 8 C 1.47087 * 120.88154 * 359.71760 * 7 5 3 9 9 C 1.53693 * 108.27939 * 128.75578 * 8 7 5 10 10 N 1.46903 * 109.25486 * 54.08364 * 9 8 7 11 11 C 1.46893 * 111.00244 * 172.61103 * 10 9 8 12 12 C 1.50704 * 109.46785 * 294.30366 * 11 10 9 13 13 O 1.21292 * 120.00026 * 359.97438 * 12 11 10 14 14 N 1.34778 * 120.00068 * 180.02562 * 12 11 10 15 15 C 1.37100 * 120.00135 * 179.97438 * 14 12 11 16 16 H 1.07997 * 119.99720 * 0.02562 * 15 14 12 17 17 C 1.38948 * 119.99698 * 179.97438 * 15 14 12 18 18 N 1.31408 * 120.00353 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 119.99770 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46939 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47168 * 119.99826 * 19 17 15 22 22 H 1.48500 * 109.47077 * 240.00075 * 19 17 15 23 23 C 1.46899 * 111.26678 * 296.75831 * 10 9 8 24 24 C 1.47073 * 120.88578 * 179.97438 * 7 5 3 25 25 N 1.46898 * 109.46916 * 64.95663 * 3 2 1 26 26 C 1.46897 * 110.99609 * 277.85123 * 25 3 2 27 27 C 1.46900 * 111.00402 * 41.80786 * 25 3 2 28 28 H 1.09006 * 109.46810 * 160.11477 * 1 2 3 29 29 H 1.08996 * 109.47270 * 280.10970 * 1 2 3 30 30 H 1.08998 * 109.47614 * 40.11709 * 1 2 3 31 31 H 1.09000 * 109.47336 * 239.99926 * 2 1 3 32 32 H 1.09001 * 109.47211 * 119.99871 * 2 1 3 33 33 H 1.08998 * 109.62738 * 248.52880 * 8 7 5 34 34 H 1.09007 * 109.62655 * 9.10234 * 8 7 5 35 35 H 1.08999 * 109.64552 * 294.08314 * 9 8 7 36 36 H 1.09000 * 109.42286 * 173.94698 * 9 8 7 37 37 H 1.09003 * 109.47444 * 54.29443 * 11 10 9 38 38 H 1.08993 * 109.47758 * 174.30333 * 11 10 9 39 39 H 0.97008 * 120.00109 * 359.97438 * 14 12 11 40 40 H 0.96999 * 120.00030 * 179.97438 * 18 17 15 41 41 H 1.09000 * 109.49782 * 303.14238 * 23 10 9 42 42 H 1.09009 * 109.51577 * 183.08044 * 23 10 9 43 43 H 1.09014 * 109.62432 * 350.89132 * 24 7 5 44 44 H 1.09000 * 109.63555 * 111.46968 * 24 7 5 45 45 H 1.08995 * 109.47255 * 68.37796 * 26 25 3 46 46 H 1.09002 * 109.47259 * 188.37543 * 26 25 3 47 47 H 1.09002 * 109.47466 * 308.37525 * 26 25 3 48 48 H 1.08998 * 109.46883 * 53.34658 * 27 25 3 49 49 H 1.08996 * 109.46834 * 173.34922 * 27 25 3 50 50 H 1.08999 * 109.46566 * 293.34241 * 27 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6059 1.9813 -0.8423 5 6 3.5419 1.4443 -0.1226 6 8 4.2307 1.5977 0.8638 7 7 4.1198 1.2757 -1.3285 8 6 3.3032 1.0822 -2.5365 9 6 3.7755 2.0830 -3.6030 10 7 5.2232 1.9320 -3.8018 11 6 5.6867 2.7448 -4.9341 12 6 5.0850 2.2168 -6.2110 13 8 4.3434 1.2575 -6.1806 14 7 5.3717 2.8100 -7.3868 15 6 4.8247 2.3293 -8.5484 16 1 4.1638 1.4757 -8.5212 17 6 5.1200 2.9412 -9.7605 18 7 5.9238 3.9802 -9.7934 19 14 4.3741 2.2868 -11.3432 20 1 3.5107 1.1179 -11.0373 21 1 3.5593 3.3505 -11.9833 22 1 5.4598 1.8712 -12.2672 23 6 5.9662 2.2616 -2.5782 24 6 5.5836 1.2747 -1.4707 25 7 1.6503 2.0996 1.2548 26 6 0.2665 2.5875 1.1858 27 6 1.8344 1.1984 2.4002 28 1 -0.3633 -0.9665 -0.3496 29 1 -0.3633 0.1804 1.0117 30 1 -0.3634 0.7858 -0.6621 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.4291 0.0639 -2.9042 34 1 2.2541 1.2627 -2.3020 35 1 3.5576 3.0991 -3.2741 36 1 3.2570 1.8847 -4.5410 37 1 5.3787 3.7802 -4.7884 38 1 6.7737 2.6944 -4.9968 39 1 5.9651 3.5770 -7.4111 40 1 6.1302 4.4071 -10.6396 41 1 5.7178 3.2752 -2.2636 42 1 7.0367 2.1932 -2.7726 43 1 6.0430 1.5827 -0.5312 44 1 5.9250 0.2746 -1.7378 45 1 -0.4170 1.7389 1.1565 46 1 0.0518 3.1967 2.0639 47 1 0.1376 3.1890 0.2860 48 1 2.8545 0.8143 2.4000 49 1 1.6521 1.7450 3.3254 50 1 1.1331 0.3674 2.3250 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001113007369.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:46:52 Heat of formation + Delta-G solvation = -34.087351 kcal Electronic energy + Delta-G solvation = -29117.390634 eV Core-core repulsion = 25180.780607 eV Total energy + Delta-G solvation = -3936.610027 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.211 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.69598 -39.00818 -37.96592 -36.96883 -34.56098 -33.81669 -32.55654 -31.29561 -31.14540 -29.25868 -28.29927 -27.76093 -25.65943 -23.93600 -23.77138 -23.08609 -22.05417 -20.46983 -19.29803 -18.82134 -17.92076 -17.47584 -16.62754 -16.15109 -15.82203 -15.41387 -15.14646 -15.06017 -14.86121 -14.65231 -14.42283 -14.03088 -13.89734 -13.77727 -13.63378 -13.17815 -12.99196 -12.78210 -12.60447 -12.37385 -12.16749 -12.00503 -11.88781 -11.85609 -11.60179 -11.55287 -11.52497 -11.25826 -11.16605 -11.10430 -11.09356 -10.82990 -10.36972 -10.25709 -9.65249 -9.51628 -8.83929 -8.42001 -8.37586 -8.01504 -7.90949 -6.44936 -3.85879 2.57807 2.83249 3.13728 3.24724 3.31316 3.78527 3.85517 3.92634 4.20010 4.30894 4.50873 4.59316 4.82204 4.92587 4.96410 5.01589 5.02289 5.08457 5.13282 5.21203 5.24904 5.25497 5.34633 5.38248 5.41237 5.44070 5.51317 5.57918 5.61263 5.72098 5.73554 5.79395 5.83452 5.85307 5.89471 5.93050 6.12607 6.17189 6.22978 6.48299 6.70245 6.80227 7.13924 7.29562 7.42610 7.52250 8.03054 8.17913 8.57860 9.14680 9.50953 10.01977 10.72786 Molecular weight = 326.21amu Principal moments of inertia in cm(-1) A = 0.021467 B = 0.002481 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.002098 B =11281.518710 C =12014.205237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.154 4.154 3 C 0.065 3.935 4 H 0.103 0.897 5 C 0.525 3.475 6 O -0.533 6.533 7 N -0.612 5.612 8 C 0.114 3.886 9 C 0.038 3.962 10 N -0.514 5.514 11 C 0.046 3.954 12 C 0.444 3.556 13 O -0.579 6.579 14 N -0.563 5.563 15 C -0.298 4.298 16 H 0.104 0.896 17 C 0.022 3.978 18 N -0.901 5.901 19 Si 0.929 3.071 20 H -0.268 1.268 21 H -0.282 1.282 22 H -0.281 1.281 23 C 0.041 3.959 24 C 0.120 3.880 25 N -0.523 5.523 26 C 0.008 3.992 27 C 0.020 3.980 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.028 0.972 36 H 0.115 0.885 37 H 0.048 0.952 38 H 0.090 0.910 39 H 0.392 0.608 40 H 0.271 0.729 41 H 0.035 0.965 42 H 0.086 0.914 43 H 0.093 0.907 44 H 0.075 0.925 45 H 0.045 0.955 46 H 0.068 0.932 47 H 0.066 0.934 48 H 0.083 0.917 49 H 0.064 0.936 50 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.592 -3.321 19.641 21.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.193 4.193 3 C -0.047 4.047 4 H 0.121 0.879 5 C 0.312 3.688 6 O -0.409 6.409 7 N -0.347 5.347 8 C -0.009 4.009 9 C -0.090 4.090 10 N -0.239 5.239 11 C -0.085 4.085 12 C 0.229 3.771 13 O -0.463 6.463 14 N -0.200 5.200 15 C -0.428 4.428 16 H 0.122 0.878 17 C -0.180 4.180 18 N -0.542 5.542 19 Si 0.756 3.244 20 H -0.192 1.192 21 H -0.208 1.208 22 H -0.207 1.207 23 C -0.088 4.088 24 C -0.002 4.002 25 N -0.246 5.246 26 C -0.140 4.140 27 C -0.128 4.128 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.100 0.900 34 H 0.101 0.899 35 H 0.046 0.954 36 H 0.133 0.867 37 H 0.066 0.934 38 H 0.108 0.892 39 H 0.225 0.775 40 H 0.081 0.919 41 H 0.053 0.947 42 H 0.105 0.895 43 H 0.111 0.889 44 H 0.093 0.907 45 H 0.063 0.937 46 H 0.087 0.913 47 H 0.085 0.915 48 H 0.101 0.899 49 H 0.083 0.917 50 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -7.261 -3.840 19.994 21.615 hybrid contribution -0.535 0.527 -1.003 1.253 sum -7.796 -3.313 18.991 20.794 Atomic orbital electron populations 1.22081 0.94848 1.02445 1.01933 1.22173 0.96961 0.96174 1.03993 1.21798 0.92996 0.95279 0.94621 0.87946 1.20403 0.89983 0.75831 0.82578 1.90628 1.64705 1.49076 1.36516 1.48250 1.07389 1.71775 1.07261 1.22046 0.94170 1.00914 0.83783 1.22730 0.89284 0.96253 1.00745 1.61501 1.03944 1.55472 1.02959 1.21855 1.00771 0.94883 0.91002 1.19714 0.86369 0.86588 0.84416 1.90470 1.40360 1.29150 1.86353 1.41890 1.43224 1.29503 1.05370 1.19737 1.25910 1.13841 0.83293 0.87826 1.25269 0.97016 0.96079 0.99601 1.69617 1.35728 1.21302 1.27587 0.85809 0.78741 0.78806 0.81039 1.19209 1.20777 1.20742 1.22500 0.99147 0.97042 0.90141 1.21658 0.79690 1.00097 0.98801 1.61801 1.22766 1.38209 1.01805 1.22824 0.88251 1.00133 1.02804 1.22547 1.02541 0.94801 0.92874 0.92102 0.92016 0.92053 0.90503 0.90461 0.89955 0.89892 0.95424 0.86675 0.93443 0.89171 0.77478 0.91893 0.94690 0.89540 0.88902 0.90710 0.93660 0.91327 0.91495 0.89878 0.91683 0.95324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.07 8.16 37.15 0.30 -0.76 16 2 C -0.15 -1.32 4.65 -26.73 -0.12 -1.44 16 3 C 0.07 0.67 1.46 -68.86 -0.10 0.57 16 4 H 0.10 0.98 5.99 -51.93 -0.31 0.67 16 5 C 0.52 6.93 6.88 -10.98 -0.08 6.85 16 6 O -0.53 -8.59 14.15 5.56 0.08 -8.51 16 7 N -0.61 -7.77 3.00 -172.20 -0.52 -8.29 16 8 C 0.11 1.39 5.75 -3.36 -0.02 1.37 16 9 C 0.04 0.58 5.27 -3.46 -0.02 0.56 16 10 N -0.51 -8.13 4.37 -235.50 -1.03 -9.16 16 11 C 0.05 0.79 5.45 -4.98 -0.03 0.76 16 12 C 0.44 9.98 7.44 -10.98 -0.08 9.90 16 13 O -0.58 -14.67 13.91 5.55 0.08 -14.59 16 14 N -0.56 -13.83 5.29 -10.96 -0.06 -13.89 16 15 C -0.30 -8.08 9.68 -14.93 -0.14 -8.22 16 16 H 0.10 2.94 7.16 -52.49 -0.38 2.56 16 17 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 18 N -0.90 -24.12 13.05 55.50 0.72 -23.40 16 19 Si 0.93 20.62 29.55 -169.99 -5.02 15.59 16 20 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 21 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 22 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 23 C 0.04 0.53 5.61 -3.72 -0.02 0.51 16 24 C 0.12 1.51 6.59 -3.63 -0.02 1.48 16 25 N -0.52 -5.50 4.66 -244.59 -1.14 -6.64 16 26 C 0.01 0.06 8.80 60.06 0.53 0.59 16 27 C 0.02 0.20 8.03 60.06 0.48 0.68 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.40 5.03 -51.93 -0.26 0.14 16 30 H 0.06 0.40 7.44 -51.93 -0.39 0.01 16 31 H 0.08 0.66 7.23 -51.93 -0.38 0.29 16 32 H 0.08 0.70 6.15 -51.93 -0.32 0.38 16 33 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 34 H 0.08 0.82 5.32 -51.93 -0.28 0.55 16 35 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.12 2.07 5.77 -51.93 -0.30 1.77 16 37 H 0.05 0.76 8.12 -51.93 -0.42 0.34 16 38 H 0.09 1.40 7.97 -51.93 -0.41 0.99 16 39 H 0.39 9.27 7.90 -40.82 -0.32 8.94 16 40 H 0.27 6.86 8.31 -40.82 -0.34 6.53 16 41 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.09 0.99 7.99 -51.92 -0.41 0.58 16 43 H 0.09 1.18 7.06 -51.92 -0.37 0.81 16 44 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.05 0.30 4.34 -51.93 -0.23 0.08 16 46 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 47 H 0.07 0.51 7.85 -51.93 -0.41 0.10 16 48 H 0.08 0.98 6.28 -51.93 -0.33 0.66 16 49 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 50 H 0.03 0.23 5.37 -51.93 -0.28 -0.04 16 LS Contribution 376.87 15.07 5.68 5.68 Total: -1.00 -31.73 376.87 -8.50 -40.24 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: -7.88 Total: 9.64 kcal Atomic # 6 Polarization: 12.75 SS G_CDS: 0.58 Total: 13.33 kcal Atomic # 7 Polarization: -59.36 SS G_CDS: -2.02 Total: -61.38 kcal Atomic # 8 Polarization: -23.25 SS G_CDS: 0.16 Total: -23.10 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.73 -8.50 -40.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113007369.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.148 kcal (2) G-P(sol) polarization free energy of solvation -31.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds