Wall clock time and date at job start Fri Apr 10 2020 14:46:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.46862 * 2 1 4 4 H 1.08996 * 109.46925 * 304.95335 * 3 2 1 5 5 C 1.50707 * 109.46900 * 184.95053 * 3 2 1 6 6 O 1.21280 * 120.00107 * 259.99698 * 5 3 2 7 7 N 1.34775 * 119.99816 * 80.00519 * 5 3 2 8 8 C 1.47087 * 120.88154 * 359.71760 * 7 5 3 9 9 C 1.53693 * 108.27939 * 128.75578 * 8 7 5 10 10 N 1.46903 * 109.25486 * 54.08364 * 9 8 7 11 11 C 1.46893 * 111.00244 * 172.61103 * 10 9 8 12 12 C 1.50704 * 109.46785 * 294.30366 * 11 10 9 13 13 O 1.21292 * 120.00026 * 359.97438 * 12 11 10 14 14 N 1.34778 * 120.00068 * 180.02562 * 12 11 10 15 15 C 1.37100 * 120.00135 * 179.97438 * 14 12 11 16 16 H 1.07997 * 119.99720 * 0.02562 * 15 14 12 17 17 C 1.38948 * 119.99698 * 179.97438 * 15 14 12 18 18 N 1.31408 * 120.00353 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 119.99770 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46939 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47168 * 119.99826 * 19 17 15 22 22 H 1.48500 * 109.47077 * 240.00075 * 19 17 15 23 23 C 1.46899 * 111.26678 * 296.75831 * 10 9 8 24 24 C 1.47073 * 120.88578 * 179.97438 * 7 5 3 25 25 N 1.46898 * 109.46916 * 64.95663 * 3 2 1 26 26 C 1.46897 * 110.99609 * 277.85123 * 25 3 2 27 27 C 1.46900 * 111.00402 * 41.80786 * 25 3 2 28 28 H 1.09006 * 109.46810 * 160.11477 * 1 2 3 29 29 H 1.08996 * 109.47270 * 280.10970 * 1 2 3 30 30 H 1.08998 * 109.47614 * 40.11709 * 1 2 3 31 31 H 1.09000 * 109.47336 * 239.99926 * 2 1 3 32 32 H 1.09001 * 109.47211 * 119.99871 * 2 1 3 33 33 H 1.08998 * 109.62738 * 248.52880 * 8 7 5 34 34 H 1.09007 * 109.62655 * 9.10234 * 8 7 5 35 35 H 1.08999 * 109.64552 * 294.08314 * 9 8 7 36 36 H 1.09000 * 109.42286 * 173.94698 * 9 8 7 37 37 H 1.09003 * 109.47444 * 54.29443 * 11 10 9 38 38 H 1.08993 * 109.47758 * 174.30333 * 11 10 9 39 39 H 0.97008 * 120.00109 * 359.97438 * 14 12 11 40 40 H 0.96999 * 120.00030 * 179.97438 * 18 17 15 41 41 H 1.09000 * 109.49782 * 303.14238 * 23 10 9 42 42 H 1.09009 * 109.51577 * 183.08044 * 23 10 9 43 43 H 1.09014 * 109.62432 * 350.89132 * 24 7 5 44 44 H 1.09000 * 109.63555 * 111.46968 * 24 7 5 45 45 H 1.08995 * 109.47255 * 68.37796 * 26 25 3 46 46 H 1.09002 * 109.47259 * 188.37543 * 26 25 3 47 47 H 1.09002 * 109.47466 * 308.37525 * 26 25 3 48 48 H 1.08998 * 109.46883 * 53.34658 * 27 25 3 49 49 H 1.08996 * 109.46834 * 173.34922 * 27 25 3 50 50 H 1.08999 * 109.46566 * 293.34241 * 27 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6059 1.9813 -0.8423 5 6 3.5419 1.4443 -0.1226 6 8 4.2307 1.5977 0.8638 7 7 4.1198 1.2757 -1.3285 8 6 3.3032 1.0822 -2.5365 9 6 3.7755 2.0830 -3.6030 10 7 5.2232 1.9320 -3.8018 11 6 5.6867 2.7448 -4.9341 12 6 5.0850 2.2168 -6.2110 13 8 4.3434 1.2575 -6.1806 14 7 5.3717 2.8100 -7.3868 15 6 4.8247 2.3293 -8.5484 16 1 4.1638 1.4757 -8.5212 17 6 5.1200 2.9412 -9.7605 18 7 5.9238 3.9802 -9.7934 19 14 4.3741 2.2868 -11.3432 20 1 3.5107 1.1179 -11.0373 21 1 3.5593 3.3505 -11.9833 22 1 5.4598 1.8712 -12.2672 23 6 5.9662 2.2616 -2.5782 24 6 5.5836 1.2747 -1.4707 25 7 1.6503 2.0996 1.2548 26 6 0.2665 2.5875 1.1858 27 6 1.8344 1.1984 2.4002 28 1 -0.3633 -0.9665 -0.3496 29 1 -0.3633 0.1804 1.0117 30 1 -0.3634 0.7858 -0.6621 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.4291 0.0639 -2.9042 34 1 2.2541 1.2627 -2.3020 35 1 3.5576 3.0991 -3.2741 36 1 3.2570 1.8847 -4.5410 37 1 5.3787 3.7802 -4.7884 38 1 6.7737 2.6944 -4.9968 39 1 5.9651 3.5770 -7.4111 40 1 6.1302 4.4071 -10.6396 41 1 5.7178 3.2752 -2.2636 42 1 7.0367 2.1932 -2.7726 43 1 6.0430 1.5827 -0.5312 44 1 5.9250 0.2746 -1.7378 45 1 -0.4170 1.7389 1.1565 46 1 0.0518 3.1967 2.0639 47 1 0.1376 3.1890 0.2860 48 1 2.8545 0.8143 2.4000 49 1 1.6521 1.7450 3.3254 50 1 1.1331 0.3674 2.3250 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001113007369.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:46:50 Heat of formation + Delta-G solvation = -58.365921 kcal Electronic energy + Delta-G solvation = -29118.443432 eV Core-core repulsion = 25180.780607 eV Total energy + Delta-G solvation = -3937.662825 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.211 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -41.67691 -40.42454 -39.19428 -38.13928 -36.05346 -35.44416 -33.30774 -33.22730 -32.17955 -30.40412 -29.22035 -28.54411 -27.23118 -25.47899 -24.83100 -23.76938 -23.03596 -21.42189 -21.03411 -19.92905 -19.75836 -18.46237 -17.78580 -17.41811 -16.85587 -16.61086 -16.37939 -16.29834 -16.10791 -15.90026 -15.55582 -15.35097 -15.21931 -15.18631 -14.80120 -14.18564 -13.96930 -13.80834 -13.51588 -13.46037 -13.23160 -13.16123 -12.99619 -12.89597 -12.80666 -12.66422 -12.54134 -12.38638 -12.29118 -12.24457 -12.17337 -12.12560 -12.07044 -11.76687 -11.42958 -10.64947 -10.32024 -9.98095 -9.74890 -9.21984 -9.13830 -8.44271 -5.92365 1.38116 1.43701 1.57299 1.57903 1.85844 2.07994 2.29685 2.72467 3.02778 3.23056 3.37057 3.42731 3.79174 3.83641 3.92233 3.99663 4.14220 4.19063 4.25311 4.28501 4.33894 4.38469 4.44723 4.47927 4.49682 4.52448 4.61234 4.64087 4.71567 4.73784 4.78247 4.83750 4.93022 4.98846 5.01710 5.04766 5.09751 5.13532 5.33385 5.42738 5.44327 5.81755 5.95304 6.05651 6.10685 6.14015 6.41230 6.62971 7.15733 7.16235 7.59672 8.14486 8.73416 Molecular weight = 326.21amu Principal moments of inertia in cm(-1) A = 0.021467 B = 0.002481 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.002098 B =11281.518710 C =12014.205237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.149 4.149 3 C 0.069 3.931 4 H 0.112 0.888 5 C 0.521 3.479 6 O -0.566 6.566 7 N -0.612 5.612 8 C 0.124 3.876 9 C 0.041 3.959 10 N -0.529 5.529 11 C 0.058 3.942 12 C 0.445 3.555 13 O -0.609 6.609 14 N -0.576 5.576 15 C -0.327 4.327 16 H 0.081 0.919 17 C -0.015 4.015 18 N -0.923 5.923 19 Si 0.991 3.009 20 H -0.271 1.271 21 H -0.272 1.272 22 H -0.274 1.274 23 C 0.047 3.953 24 C 0.120 3.880 25 N -0.544 5.544 26 C 0.008 3.992 27 C 0.025 3.975 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.108 0.892 35 H 0.033 0.967 36 H 0.084 0.916 37 H 0.064 0.936 38 H 0.112 0.888 39 H 0.395 0.605 40 H 0.276 0.724 41 H 0.036 0.964 42 H 0.104 0.896 43 H 0.092 0.908 44 H 0.077 0.923 45 H 0.060 0.940 46 H 0.072 0.928 47 H 0.070 0.930 48 H 0.058 0.942 49 H 0.070 0.930 50 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.449 -3.254 20.063 22.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.188 4.188 3 C -0.043 4.043 4 H 0.130 0.870 5 C 0.309 3.691 6 O -0.444 6.444 7 N -0.346 5.346 8 C 0.001 3.999 9 C -0.088 4.088 10 N -0.254 5.254 11 C -0.073 4.073 12 C 0.232 3.768 13 O -0.495 6.495 14 N -0.213 5.213 15 C -0.456 4.456 16 H 0.099 0.901 17 C -0.214 4.214 18 N -0.564 5.564 19 Si 0.815 3.185 20 H -0.196 1.196 21 H -0.198 1.198 22 H -0.199 1.199 23 C -0.081 4.081 24 C -0.002 4.002 25 N -0.268 5.268 26 C -0.139 4.139 27 C -0.122 4.122 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.126 0.874 35 H 0.051 0.949 36 H 0.102 0.898 37 H 0.082 0.918 38 H 0.130 0.870 39 H 0.229 0.771 40 H 0.086 0.914 41 H 0.054 0.946 42 H 0.123 0.877 43 H 0.110 0.890 44 H 0.095 0.905 45 H 0.078 0.922 46 H 0.091 0.909 47 H 0.089 0.911 48 H 0.076 0.924 49 H 0.089 0.911 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -8.117 -3.764 20.427 22.301 hybrid contribution -0.253 0.495 -1.053 1.191 sum -8.370 -3.269 19.375 21.357 Atomic orbital electron populations 1.22052 0.93210 1.03135 1.02470 1.22133 0.98266 0.94779 1.03613 1.21794 0.90850 0.96544 0.95085 0.87014 1.20985 0.91224 0.74839 0.82016 1.90613 1.65727 1.50597 1.37495 1.48312 1.07514 1.71407 1.07333 1.21977 0.95358 0.99737 0.82826 1.22628 0.88818 0.97286 1.00057 1.61487 1.04591 1.55628 1.03697 1.21729 1.01522 0.95421 0.88678 1.20656 0.85102 0.85567 0.85483 1.90453 1.41460 1.30470 1.87117 1.41961 1.43802 1.30016 1.05557 1.19687 1.26888 1.14099 0.84969 0.90057 1.26022 0.97176 0.96148 1.02099 1.69680 1.36270 1.21886 1.28564 0.84891 0.78095 0.78195 0.77299 1.19575 1.19785 1.19893 1.22522 0.99792 0.97060 0.88748 1.21652 0.79874 1.00139 0.98561 1.61773 1.24522 1.38631 1.01858 1.22871 0.87060 1.00729 1.03243 1.22457 1.01424 0.95320 0.93040 0.91393 0.91493 0.91431 0.90619 0.91159 0.90509 0.87391 0.94912 0.89770 0.91818 0.87032 0.77142 0.91434 0.94573 0.87736 0.88987 0.90505 0.92186 0.90881 0.91144 0.92364 0.91132 0.93747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 8.16 71.98 0.59 -1.11 16 2 C -0.15 -2.30 4.65 30.59 0.14 -2.15 16 3 C 0.07 1.33 1.46 44.17 0.06 1.39 16 4 H 0.11 1.90 5.99 -2.39 -0.01 1.89 16 5 C 0.52 13.31 6.88 87.66 0.60 13.91 16 6 O -0.57 -18.14 14.15 -3.03 -0.04 -18.18 16 7 N -0.61 -14.89 3.00 -817.11 -2.45 -17.34 16 8 C 0.12 2.89 5.75 86.50 0.50 3.39 16 9 C 0.04 1.19 5.27 86.54 0.46 1.65 16 10 N -0.53 -16.12 4.37 -898.97 -3.93 -20.05 16 11 C 0.06 1.90 5.45 85.56 0.47 2.37 16 12 C 0.44 20.11 7.44 87.66 0.65 20.76 16 13 O -0.61 -31.42 13.91 -3.07 -0.04 -31.47 16 14 N -0.58 -28.61 5.29 -306.98 -1.62 -30.23 16 15 C -0.33 -18.02 9.68 84.04 0.81 -17.21 16 16 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 17 C -0.02 -0.79 5.50 84.93 0.47 -0.32 16 18 N -0.92 -49.19 13.05 21.66 0.28 -48.91 16 19 Si 0.99 42.14 29.55 68.60 2.03 44.16 16 20 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 21 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 22 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 23 C 0.05 1.13 5.61 86.37 0.48 1.62 16 24 C 0.12 2.89 6.59 86.34 0.57 3.46 16 25 N -0.54 -10.67 4.66 -927.74 -4.32 -14.99 16 26 C 0.01 0.11 8.80 127.69 1.12 1.23 16 27 C 0.03 0.47 8.03 127.69 1.03 1.49 16 28 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 29 H 0.07 0.69 5.03 -2.39 -0.01 0.67 16 30 H 0.07 0.69 7.44 -2.39 -0.02 0.67 16 31 H 0.08 1.19 7.23 -2.39 -0.02 1.17 16 32 H 0.07 1.19 6.15 -2.39 -0.01 1.18 16 33 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.11 1.95 5.32 -2.38 -0.01 1.94 16 35 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.08 3.05 5.77 -2.39 -0.01 3.03 16 37 H 0.06 1.93 8.12 -2.39 -0.02 1.91 16 38 H 0.11 3.23 7.97 -2.39 -0.02 3.22 16 39 H 0.39 18.81 7.90 -92.70 -0.73 18.07 16 40 H 0.28 13.80 8.31 -92.71 -0.77 13.03 16 41 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.10 2.15 7.99 -2.38 -0.02 2.13 16 43 H 0.09 2.26 7.06 -2.38 -0.02 2.24 16 44 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 45 H 0.06 0.64 4.34 -2.39 -0.01 0.63 16 46 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 47 H 0.07 0.91 7.85 -2.39 -0.02 0.89 16 48 H 0.06 1.38 6.28 -2.39 -0.02 1.36 16 49 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 50 H 0.04 0.66 5.37 -2.39 -0.01 0.64 16 Total: -1.00 -68.77 376.87 -1.92 -70.69 By element: Atomic # 1 Polarization: 35.61 SS G_CDS: 0.23 Total: 35.83 kcal Atomic # 6 Polarization: 22.54 SS G_CDS: 7.95 Total: 30.49 kcal Atomic # 7 Polarization: -119.49 SS G_CDS: -12.04 Total: -131.53 kcal Atomic # 8 Polarization: -49.56 SS G_CDS: -0.09 Total: -49.65 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.16 kcal Total: -68.77 -1.92 -70.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113007369.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.323 kcal (2) G-P(sol) polarization free energy of solvation -68.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds