Wall clock time and date at job start Fri Apr 10 2020 14:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52994 * 109.47365 * 2 1 4 4 H 1.09003 * 109.47274 * 54.26273 * 3 2 1 5 5 C 1.50699 * 109.47256 * 174.25816 * 3 2 1 6 6 O 1.21287 * 119.99912 * 114.89685 * 5 3 2 7 7 N 1.34773 * 120.00576 * 294.90017 * 5 3 2 8 8 C 1.47086 * 120.87665 * 356.56097 * 7 5 3 9 9 C 1.53703 * 108.27272 * 128.75411 * 8 7 5 10 10 N 1.46903 * 109.25589 * 54.08551 * 9 8 7 11 11 C 1.46898 * 111.00107 * 172.60741 * 10 9 8 12 12 C 1.50702 * 109.46852 * 294.30352 * 11 10 9 13 13 O 1.21288 * 120.00358 * 359.97438 * 12 11 10 14 14 N 1.34780 * 120.00063 * 180.02562 * 12 11 10 15 15 C 1.37092 * 120.00135 * 179.97438 * 14 12 11 16 16 H 1.07995 * 120.00187 * 0.02562 * 15 14 12 17 17 C 1.38951 * 120.00140 * 179.97438 * 15 14 12 18 18 N 1.31414 * 120.00298 * 180.02562 * 17 15 14 19 19 Si 1.86802 * 119.99861 * 0.02562 * 17 15 14 20 20 H 1.48496 * 109.47266 * 89.99633 * 19 17 15 21 21 H 1.48503 * 109.46979 * 210.00012 * 19 17 15 22 22 H 1.48500 * 109.47069 * 329.99268 * 19 17 15 23 23 C 1.46903 * 111.26572 * 296.75321 * 10 9 8 24 24 C 1.47081 * 120.88466 * 176.84310 * 7 5 3 25 25 N 1.46901 * 109.47459 * 294.26361 * 3 2 1 26 26 C 1.46894 * 110.99621 * 320.75243 * 25 3 2 27 27 C 1.46899 * 110.99938 * 84.70739 * 25 3 2 28 28 H 1.08998 * 109.47739 * 194.80120 * 1 2 3 29 29 H 1.09004 * 109.47059 * 314.80059 * 1 2 3 30 30 H 1.09004 * 109.47519 * 74.79906 * 1 2 3 31 31 H 1.09005 * 109.46980 * 240.00161 * 2 1 3 32 32 H 1.09002 * 109.47197 * 120.00682 * 2 1 3 33 33 H 1.08996 * 109.62654 * 248.52086 * 8 7 5 34 34 H 1.09003 * 109.62879 * 9.10604 * 8 7 5 35 35 H 1.08996 * 109.65091 * 294.08149 * 9 8 7 36 36 H 1.08992 * 109.41828 * 173.94644 * 9 8 7 37 37 H 1.09005 * 109.47137 * 54.29571 * 11 10 9 38 38 H 1.08996 * 109.47035 * 174.30128 * 11 10 9 39 39 H 0.97000 * 119.99581 * 359.97438 * 14 12 11 40 40 H 0.96991 * 120.00105 * 180.02562 * 18 17 15 41 41 H 1.08992 * 109.49516 * 303.14411 * 23 10 9 42 42 H 1.09005 * 109.49069 * 183.06230 * 23 10 9 43 43 H 1.08998 * 109.62478 * 350.89455 * 24 7 5 44 44 H 1.08994 * 109.62757 * 111.48071 * 24 7 5 45 45 H 1.09001 * 109.47215 * 60.00234 * 26 25 3 46 46 H 1.09000 * 109.47252 * 180.02562 * 26 25 3 47 47 H 1.09003 * 109.47838 * 299.99882 * 26 25 3 48 48 H 1.08999 * 109.47477 * 64.13453 * 27 25 3 49 49 H 1.09003 * 109.46960 * 184.13719 * 27 25 3 50 50 H 1.09002 * 109.47091 * 304.13117 * 27 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5952 1.9851 0.8342 5 6 3.5402 1.4448 0.1421 6 8 4.2345 1.8559 -0.7634 7 7 4.1106 0.9900 1.2754 8 6 3.2864 0.5572 2.4142 9 6 3.7546 -0.8424 2.8436 10 7 5.2007 -0.8119 3.1002 11 6 5.6593 -2.0812 3.6804 12 6 5.0488 -2.2585 5.0467 13 8 4.3053 -1.4108 5.4935 14 7 5.3299 -3.3587 5.7728 15 6 4.7750 -3.5198 7.0160 16 1 4.1123 -2.7654 7.4134 17 6 5.0643 -4.6543 7.7643 18 7 4.5320 -4.8090 8.9558 19 14 6.2100 -5.9596 7.0766 20 1 7.6079 -5.6476 7.4686 21 1 5.8286 -7.2885 7.6189 22 1 6.1041 -5.9806 5.5955 23 6 5.9518 -0.4892 1.8797 24 6 5.5736 0.9191 1.4085 25 7 1.6667 2.0939 -1.2626 26 6 1.8077 1.1681 -2.3944 27 6 0.3031 2.6357 -1.1924 28 1 -0.3634 -0.9935 0.2625 29 1 -0.3633 0.7242 0.7292 30 1 -0.3634 0.2695 -0.9917 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.4079 1.2570 3.2410 34 1 2.2391 0.5184 2.1144 35 1 3.5409 -1.5596 2.0511 36 1 3.2301 -1.1370 3.7524 37 1 5.3545 -2.9062 3.0364 38 1 6.7458 -2.0697 3.7665 39 1 5.9248 -4.0365 5.4157 40 1 4.7342 -5.6007 9.4783 41 1 5.7075 -1.2112 1.1006 42 1 7.0208 -0.5276 2.0895 43 1 6.0392 1.1197 0.4436 44 1 5.9106 1.6529 2.1405 45 1 1.1592 0.3055 -2.2411 46 1 1.5254 1.6760 -3.3166 47 1 2.8435 0.8360 -2.4654 48 1 0.2630 3.4225 -0.4391 49 1 0.0252 3.0472 -2.1628 50 1 -0.3909 1.8394 -0.9232 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001113351203.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:46:53 Heat of formation + Delta-G solvation = -47.401455 kcal Electronic energy + Delta-G solvation = -29365.909116 eV Core-core repulsion = 25428.721746 eV Total energy + Delta-G solvation = -3937.187370 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.211 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.73476 -40.51011 -39.20279 -38.22466 -36.09216 -35.49769 -33.72179 -33.40297 -32.05219 -30.49809 -29.23783 -28.59809 -27.26321 -25.32630 -24.83583 -23.84430 -22.84288 -21.58721 -21.25297 -20.24948 -19.72553 -18.39460 -17.76139 -17.52960 -16.84340 -16.73110 -16.54578 -16.34310 -16.08998 -15.80127 -15.56856 -15.41237 -15.18079 -15.00502 -14.83071 -14.42658 -14.18878 -13.90555 -13.66971 -13.44556 -13.29422 -13.10479 -13.01877 -12.91803 -12.78415 -12.69797 -12.54333 -12.40525 -12.34275 -12.26690 -12.18716 -12.12891 -11.95649 -11.65386 -11.43987 -10.66774 -10.39253 -10.20849 -9.75631 -9.21052 -9.11825 -8.38884 -5.98926 1.31291 1.36769 1.45107 1.59445 1.85562 1.98741 2.24398 2.59591 3.00793 3.16304 3.21335 3.41162 3.77611 3.84936 3.91810 3.97856 4.08429 4.18079 4.23690 4.28188 4.30203 4.32980 4.37843 4.44791 4.47627 4.49728 4.59264 4.61128 4.72375 4.75054 4.77413 4.83233 4.91073 4.97094 4.98524 5.05384 5.06532 5.14146 5.32859 5.43224 5.54909 5.84434 5.94982 6.00960 6.10736 6.12314 6.41457 6.62330 6.91630 7.17875 7.43223 7.99783 8.78586 Molecular weight = 326.21amu Principal moments of inertia in cm(-1) A = 0.022115 B = 0.002634 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.796281 B =10626.814567 C =11195.046915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.158 4.158 3 C 0.071 3.929 4 H 0.114 0.886 5 C 0.519 3.481 6 O -0.563 6.563 7 N -0.612 5.612 8 C 0.116 3.884 9 C 0.043 3.957 10 N -0.534 5.534 11 C 0.055 3.945 12 C 0.454 3.546 13 O -0.601 6.601 14 N -0.593 5.593 15 C -0.323 4.323 16 H 0.058 0.942 17 C -0.016 4.016 18 N -0.935 5.935 19 Si 0.962 3.038 20 H -0.259 1.259 21 H -0.278 1.278 22 H -0.231 1.231 23 C 0.049 3.951 24 C 0.119 3.881 25 N -0.542 5.542 26 C 0.025 3.975 27 C 0.005 3.995 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.112 0.888 35 H 0.040 0.960 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.122 0.878 39 H 0.388 0.612 40 H 0.278 0.722 41 H 0.042 0.958 42 H 0.108 0.892 43 H 0.092 0.908 44 H 0.072 0.928 45 H 0.047 0.953 46 H 0.074 0.926 47 H 0.050 0.950 48 H 0.068 0.932 49 H 0.075 0.925 50 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.668 6.869 -23.053 24.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.196 4.196 3 C -0.041 4.041 4 H 0.132 0.868 5 C 0.307 3.693 6 O -0.441 6.441 7 N -0.346 5.346 8 C -0.007 4.007 9 C -0.086 4.086 10 N -0.259 5.259 11 C -0.076 4.076 12 C 0.241 3.759 13 O -0.484 6.484 14 N -0.235 5.235 15 C -0.452 4.452 16 H 0.076 0.924 17 C -0.214 4.214 18 N -0.576 5.576 19 Si 0.782 3.218 20 H -0.183 1.183 21 H -0.203 1.203 22 H -0.155 1.155 23 C -0.079 4.079 24 C -0.004 4.004 25 N -0.265 5.265 26 C -0.123 4.123 27 C -0.142 4.142 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.098 0.902 33 H 0.089 0.911 34 H 0.130 0.870 35 H 0.058 0.942 36 H 0.099 0.901 37 H 0.094 0.906 38 H 0.140 0.860 39 H 0.224 0.776 40 H 0.087 0.913 41 H 0.060 0.940 42 H 0.126 0.874 43 H 0.110 0.890 44 H 0.091 0.909 45 H 0.065 0.935 46 H 0.093 0.907 47 H 0.068 0.932 48 H 0.087 0.913 49 H 0.094 0.906 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.423 8.334 -22.813 24.527 hybrid contribution -0.061 -2.060 0.157 2.067 sum -3.485 6.274 -22.655 23.765 Atomic orbital electron populations 1.22049 0.93300 1.03071 1.02646 1.22336 0.98346 0.95116 1.03840 1.21699 0.91045 0.96273 0.95122 0.86843 1.20999 0.91252 0.76038 0.80982 1.90637 1.65211 1.47431 1.40855 1.48287 1.07522 1.64065 1.14741 1.22091 0.95654 0.95002 0.87948 1.22603 0.88890 0.96551 1.00556 1.61442 1.04501 1.31916 1.28066 1.21821 1.02008 0.92031 0.91755 1.20799 0.84572 0.82060 0.88437 1.90511 1.40711 1.43900 1.73307 1.42056 1.44849 1.20578 1.16059 1.18986 1.26965 1.06507 0.92743 0.92363 1.26071 0.99589 1.00146 0.95597 1.69799 1.45394 1.30076 1.12360 0.85404 0.78604 0.77421 0.80336 1.18340 1.20298 1.15461 1.22527 0.99773 0.95863 0.89704 1.21675 0.79845 0.96889 1.01998 1.61745 1.26546 1.36281 1.01959 1.22457 1.01150 0.95290 0.93419 1.22883 0.87522 1.00366 1.03397 0.91586 0.91289 0.91292 0.90968 0.90241 0.91146 0.86979 0.94151 0.90092 0.90642 0.85964 0.77640 0.91262 0.93994 0.87414 0.88980 0.90935 0.93456 0.90724 0.93156 0.91286 0.90604 0.92070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 8.10 71.98 0.58 -1.19 16 2 C -0.16 -2.43 4.39 30.59 0.13 -2.30 16 3 C 0.07 1.33 1.49 44.17 0.07 1.39 16 4 H 0.11 1.88 7.22 -2.39 -0.02 1.86 16 5 C 0.52 12.99 6.91 87.66 0.61 13.59 16 6 O -0.56 -17.98 14.80 -3.05 -0.05 -18.03 16 7 N -0.61 -14.35 3.00 -817.02 -2.45 -16.80 16 8 C 0.12 2.64 5.67 86.50 0.49 3.13 16 9 C 0.04 1.16 5.10 86.54 0.44 1.60 16 10 N -0.53 -14.78 4.37 -898.86 -3.93 -18.70 16 11 C 0.05 1.56 5.45 85.56 0.47 2.03 16 12 C 0.45 19.18 7.44 87.66 0.65 19.83 16 13 O -0.60 -30.85 13.91 -3.05 -0.04 -30.89 16 14 N -0.59 -26.71 5.09 -306.99 -1.56 -28.27 16 15 C -0.32 -18.27 10.16 84.04 0.85 -17.41 16 16 H 0.06 3.93 7.39 -2.91 -0.02 3.91 16 17 C -0.02 -0.84 5.50 84.93 0.47 -0.38 16 18 N -0.94 -55.44 13.96 21.66 0.30 -55.13 16 19 Si 0.96 37.85 27.74 68.60 1.90 39.75 16 20 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 21 H -0.28 -10.95 7.11 99.48 0.71 -10.25 16 22 H -0.23 -7.58 6.52 99.48 0.65 -6.93 16 23 C 0.05 1.04 5.62 86.38 0.49 1.52 16 24 C 0.12 2.68 6.59 86.35 0.57 3.25 16 25 N -0.54 -10.36 4.48 -927.75 -4.15 -14.52 16 26 C 0.02 0.43 8.16 127.69 1.04 1.47 16 27 C 0.01 0.07 9.16 127.69 1.17 1.24 16 28 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.07 0.71 7.66 -2.38 -0.02 0.70 16 30 H 0.07 0.71 5.07 -2.38 -0.01 0.70 16 31 H 0.07 1.21 6.02 -2.38 -0.01 1.19 16 32 H 0.08 1.30 4.98 -2.39 -0.01 1.29 16 33 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.11 2.02 4.36 -2.39 -0.01 2.01 16 35 H 0.04 0.99 7.80 -2.39 -0.02 0.97 16 36 H 0.08 2.82 5.77 -2.39 -0.01 2.80 16 37 H 0.08 1.81 8.12 -2.38 -0.02 1.79 16 38 H 0.12 2.80 7.97 -2.39 -0.02 2.78 16 39 H 0.39 14.47 5.76 -92.71 -0.53 13.94 16 40 H 0.28 15.10 8.31 -92.71 -0.77 14.33 16 41 H 0.04 0.84 8.14 -2.39 -0.02 0.83 16 42 H 0.11 1.84 7.99 -2.38 -0.02 1.82 16 43 H 0.09 2.13 7.08 -2.39 -0.02 2.11 16 44 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 45 H 0.05 0.68 4.94 -2.39 -0.01 0.67 16 46 H 0.07 1.15 8.07 -2.39 -0.02 1.13 16 47 H 0.05 1.13 7.05 -2.39 -0.02 1.11 16 48 H 0.07 0.88 8.13 -2.39 -0.02 0.86 16 49 H 0.08 0.88 8.05 -2.39 -0.02 0.86 16 50 H 0.06 0.63 3.98 -2.39 -0.01 0.62 16 Total: -1.00 -76.97 372.08 -1.58 -78.55 By element: Atomic # 1 Polarization: 35.89 SS G_CDS: 0.37 Total: 36.26 kcal Atomic # 6 Polarization: 19.76 SS G_CDS: 8.03 Total: 27.79 kcal Atomic # 7 Polarization: -121.63 SS G_CDS: -11.80 Total: -133.42 kcal Atomic # 8 Polarization: -48.84 SS G_CDS: -0.09 Total: -48.92 kcal Atomic # 14 Polarization: 37.85 SS G_CDS: 1.90 Total: 39.75 kcal Total: -76.97 -1.58 -78.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113351203.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.148 kcal (2) G-P(sol) polarization free energy of solvation -76.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds