Wall clock time and date at job start Fri Apr 10 2020 14:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52994 * 109.47018 * 2 1 4 4 N 1.46897 * 109.47101 * 120.00028 * 2 1 3 5 5 C 1.47842 * 111.00167 * 47.82639 * 4 2 1 6 6 C 1.54910 * 104.79985 * 146.36260 * 5 4 2 7 7 C 1.55137 * 101.64838 * 322.93337 * 6 5 4 8 8 C 1.47445 * 110.99850 * 168.67015 * 4 2 1 9 9 H 1.08997 * 109.89066 * 117.17569 * 8 4 2 10 10 C 1.50697 * 109.88822 * 356.14727 * 8 4 2 11 11 O 1.21280 * 120.00172 * 296.92104 * 10 8 4 12 12 N 1.34775 * 120.00082 * 116.92635 * 10 8 4 13 13 C 1.46498 * 120.00116 * 180.02562 * 12 10 8 14 14 C 1.52998 * 109.47247 * 179.97438 * 13 12 10 15 15 N 1.46892 * 109.47274 * 179.97438 * 14 13 12 16 16 C 1.46908 * 110.99869 * 179.97438 * 15 14 13 17 17 C 1.50708 * 109.46880 * 179.97438 * 16 15 14 18 18 O 1.21286 * 119.99957 * 0.02562 * 17 16 15 19 19 N 1.34769 * 119.99746 * 180.02562 * 17 16 15 20 20 C 1.37102 * 119.99892 * 180.02562 * 19 17 16 21 21 H 1.07995 * 119.99920 * 0.02562 * 20 19 17 22 22 C 1.38952 * 120.00023 * 180.02562 * 20 19 17 23 23 N 1.31413 * 120.00094 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00054 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.47214 * 60.00082 * 24 22 20 26 26 H 1.48504 * 109.47287 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.47100 * 299.99982 * 24 22 20 28 28 H 1.08994 * 109.46962 * 299.99966 * 1 2 3 29 29 H 1.09002 * 109.47170 * 60.00020 * 1 2 3 30 30 H 1.08996 * 109.47091 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.46962 * 240.00034 * 2 1 3 32 32 H 1.08999 * 109.47367 * 185.67135 * 3 2 1 33 33 H 1.09005 * 109.47492 * 305.67734 * 3 2 1 34 34 H 1.09003 * 109.47380 * 65.67175 * 3 2 1 35 35 H 1.09000 * 110.37710 * 265.19571 * 5 4 2 36 36 H 1.09004 * 110.37304 * 27.53463 * 5 4 2 37 37 H 1.08995 * 110.98900 * 81.02145 * 6 5 4 38 38 H 1.08990 * 110.98943 * 204.80356 * 6 5 4 39 39 H 1.09006 * 110.70667 * 277.26435 * 7 6 5 40 40 H 1.09005 * 110.70765 * 154.03891 * 7 6 5 41 41 H 0.97003 * 119.99633 * 359.97438 * 12 10 8 42 42 H 1.08998 * 109.47205 * 299.99598 * 13 12 10 43 43 H 1.08996 * 109.47102 * 60.00064 * 13 12 10 44 44 H 1.09004 * 109.47151 * 300.00160 * 14 13 12 45 45 H 1.09004 * 109.47051 * 59.99405 * 14 13 12 46 46 H 1.00898 * 111.00181 * 56.05000 * 15 14 13 47 47 H 1.08990 * 109.47209 * 299.99710 * 16 15 14 48 48 H 1.09002 * 109.47085 * 60.00312 * 16 15 14 49 49 H 0.96996 * 120.00568 * 0.02562 * 19 17 16 50 50 H 0.97003 * 120.00135 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 1.3227 -1.9826 1.3881 6 6 2.3867 -2.9197 2.0121 7 6 3.6729 -2.4716 1.2693 8 6 3.4684 -0.9508 1.1060 9 1 3.9922 -0.4166 1.8986 10 6 3.9828 -0.5057 -0.2387 11 8 3.5774 -1.0388 -1.2499 12 7 4.8935 0.4846 -0.3178 13 6 5.3932 0.9177 -1.6250 14 6 6.4081 2.0466 -1.4347 15 7 6.9096 2.4804 -2.7454 16 6 7.8883 3.5665 -2.6015 17 6 8.3797 3.9837 -3.9638 18 8 7.9559 3.4310 -4.9568 19 7 9.2900 4.9708 -4.0786 20 6 9.7366 5.3507 -5.3179 21 1 9.3586 4.8592 -6.2021 22 6 10.6755 6.3681 -5.4362 23 7 11.1351 6.9666 -4.3603 24 14 11.2835 6.8862 -7.1248 25 1 10.1363 7.3602 -7.9400 26 1 12.2735 7.9835 -6.9793 27 1 11.9235 5.7274 -7.7974 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 3.1253 1.4442 -0.1016 33 1 1.5961 1.9849 -0.8348 34 1 1.7620 1.9262 0.9364 35 1 0.4784 -1.8620 2.0668 36 1 0.9863 -2.3760 0.4288 37 1 2.4760 -2.7493 3.0849 38 1 2.1579 -3.9645 1.8024 39 1 3.7451 -2.9575 0.2962 40 1 4.5577 -2.6791 1.8713 41 1 5.2176 0.9111 0.4910 42 1 5.8735 0.0777 -2.1269 43 1 4.5614 1.2759 -2.2315 44 1 5.9275 2.8865 -0.9330 45 1 7.2400 1.6888 -0.8280 46 1 6.1503 2.7562 -3.3499 47 1 7.4175 4.4169 -2.1086 48 1 8.7304 3.2197 -2.0024 49 1 9.6292 5.4126 -3.2844 50 1 11.7903 7.6771 -4.4429 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001127067117.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:48:10 Heat of formation + Delta-G solvation = -53.101523 kcal Electronic energy + Delta-G solvation = -27870.708296 eV Core-core repulsion = 23933.273752 eV Total energy + Delta-G solvation = -3937.434543 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.211 amu Computer time = 2.95 seconds Orbital eigenvalues (eV) -41.35448 -38.48922 -38.17097 -36.29525 -34.78512 -34.47385 -33.78156 -31.27186 -30.72224 -29.55305 -28.96510 -27.19294 -26.07503 -24.12833 -23.01520 -22.14596 -21.70206 -21.13425 -19.85679 -19.28596 -17.92690 -17.42309 -17.11116 -16.46967 -16.17952 -15.80036 -15.68241 -15.39382 -14.62325 -14.50433 -14.31268 -14.16779 -13.91305 -13.73165 -13.45064 -13.35087 -13.12653 -12.74989 -12.50002 -12.45330 -12.36688 -12.10773 -11.95537 -11.61512 -11.55493 -11.51659 -11.50951 -11.48318 -11.20683 -11.11201 -11.06386 -10.99949 -10.45182 -10.32149 -10.22691 -9.51809 -9.25098 -8.53280 -8.52198 -8.15568 -7.98346 -6.43360 -3.84305 2.21459 2.79379 3.19436 3.25192 3.29834 3.56813 3.88065 4.05818 4.12179 4.23423 4.33634 4.45597 4.68651 4.76137 4.79969 4.85495 4.91786 4.95497 5.05536 5.15180 5.22853 5.24206 5.31307 5.34989 5.40782 5.44159 5.46478 5.52085 5.57933 5.65097 5.69784 5.72157 5.77210 5.79330 5.86433 5.91265 5.91825 6.07170 6.15248 6.23314 6.52248 6.69286 7.05805 7.17624 7.53449 7.53870 7.88877 8.04080 8.59062 9.15972 9.51854 10.03221 10.74218 Molecular weight = 326.21amu Principal moments of inertia in cm(-1) A = 0.032392 B = 0.001755 C = 0.001727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.215917 B =15948.359936 C =16211.425549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.029 3.971 3 C -0.160 4.160 4 N -0.499 5.499 5 C 0.039 3.961 6 C -0.127 4.127 7 C -0.130 4.130 8 C 0.054 3.946 9 H 0.100 0.900 10 C 0.509 3.491 11 O -0.532 6.532 12 N -0.724 5.724 13 C 0.118 3.882 14 C 0.049 3.951 15 N -0.665 5.665 16 C 0.052 3.948 17 C 0.439 3.561 18 O -0.582 6.582 19 N -0.563 5.563 20 C -0.300 4.300 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.932 3.068 25 H -0.274 1.274 26 H -0.284 1.284 27 H -0.273 1.273 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.055 0.945 31 H 0.091 0.909 32 H 0.067 0.933 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.084 0.916 36 H 0.053 0.947 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.402 0.598 42 H 0.080 0.920 43 H 0.068 0.932 44 H 0.033 0.967 45 H 0.077 0.923 46 H 0.352 0.648 47 H 0.045 0.955 48 H 0.087 0.913 49 H 0.392 0.608 50 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.325 -14.495 18.357 29.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.078 4.078 3 C -0.218 4.218 4 N -0.225 5.225 5 C -0.088 4.088 6 C -0.165 4.165 7 C -0.168 4.168 8 C -0.058 4.058 9 H 0.118 0.882 10 C 0.295 3.705 11 O -0.409 6.409 12 N -0.377 5.377 13 C -0.006 4.006 14 C -0.081 4.081 15 N -0.298 5.298 16 C -0.080 4.080 17 C 0.225 3.775 18 O -0.467 6.467 19 N -0.199 5.199 20 C -0.430 4.430 21 H 0.121 0.879 22 C -0.179 4.179 23 N -0.543 5.543 24 Si 0.759 3.241 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.108 0.892 32 H 0.086 0.914 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.102 0.898 36 H 0.071 0.929 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.236 0.764 42 H 0.099 0.901 43 H 0.087 0.913 44 H 0.051 0.949 45 H 0.096 0.904 46 H 0.172 0.828 47 H 0.063 0.937 48 H 0.105 0.895 49 H 0.226 0.774 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -17.368 -15.229 17.322 28.873 hybrid contribution 0.377 1.243 -0.314 1.336 sum -16.991 -13.986 17.008 27.813 Atomic orbital electron populations 1.21900 0.94379 1.01838 1.02127 1.22579 0.96011 0.95822 0.93435 1.22153 1.02483 0.95075 1.02060 1.64197 1.00543 1.20350 1.37398 1.23120 0.97349 0.88213 1.00126 1.22701 0.94097 0.99433 1.00293 1.22773 0.99175 0.92795 1.02097 1.22625 0.91291 0.97637 0.94206 0.88166 1.20907 0.78647 0.79121 0.91801 1.90634 1.56922 1.55625 1.37705 1.46143 1.43704 1.37735 1.10094 1.21306 0.96949 0.98097 0.84216 1.22079 0.97315 0.96146 0.92531 1.59946 1.18909 1.40223 1.10757 1.21672 0.96419 0.92497 0.97441 1.19768 0.84211 0.83637 0.89913 1.90532 1.60712 1.56781 1.38630 1.41846 1.36975 1.31638 1.09460 1.19664 1.21010 1.16534 0.85789 0.87935 1.25269 0.96934 0.96551 0.99177 1.69603 1.31097 1.25139 1.28470 0.85904 0.78495 0.78171 0.81570 1.19907 1.20969 1.19857 0.92188 0.92145 0.92613 0.89183 0.91394 0.92283 0.92046 0.89803 0.92877 0.90390 0.90413 0.90076 0.90061 0.76376 0.90140 0.91329 0.94878 0.90437 0.82835 0.93694 0.89459 0.77446 0.91802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 8.83 37.16 0.33 -0.88 16 2 C 0.03 0.28 2.11 -67.71 -0.14 0.14 16 3 C -0.16 -1.51 8.97 37.15 0.33 -1.17 16 4 N -0.50 -4.33 5.03 -216.81 -1.09 -5.42 16 5 C 0.04 0.29 5.30 -2.30 -0.01 0.28 16 6 C -0.13 -0.76 7.08 -24.59 -0.17 -0.94 16 7 C -0.13 -0.94 6.43 -24.91 -0.16 -1.10 16 8 C 0.05 0.44 3.63 -67.88 -0.25 0.19 16 9 H 0.10 0.64 7.94 -51.93 -0.41 0.23 16 10 C 0.51 5.28 3.93 -10.99 -0.04 5.24 16 11 O -0.53 -7.50 13.84 5.56 0.08 -7.42 16 12 N -0.72 -6.35 3.82 -60.30 -0.23 -6.58 16 13 C 0.12 1.29 5.93 -4.04 -0.02 1.27 16 14 C 0.05 0.54 5.80 -3.83 -0.02 0.52 16 15 N -0.67 -10.36 6.13 -115.05 -0.70 -11.06 16 16 C 0.05 0.89 6.17 -4.97 -0.03 0.86 16 17 C 0.44 10.31 7.82 -10.98 -0.09 10.22 16 18 O -0.58 -15.85 15.78 5.55 0.09 -15.76 16 19 N -0.56 -14.17 5.29 -10.96 -0.06 -14.23 16 20 C -0.30 -8.37 9.68 -14.93 -0.14 -8.52 16 21 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 22 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.39 13.05 55.50 0.72 -23.67 16 24 Si 0.93 21.04 29.55 -169.99 -5.02 16.01 16 25 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 26 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 27 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.05 0.43 6.41 -51.93 -0.33 0.10 16 31 H 0.09 1.14 4.82 -51.97 -0.25 0.88 16 32 H 0.07 0.64 4.38 -51.93 -0.23 0.41 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.05 0.44 6.94 -51.93 -0.36 0.08 16 37 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.08 0.74 7.43 -51.93 -0.39 0.36 16 40 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.40 2.46 8.33 -40.82 -0.34 2.12 16 42 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 46 H 0.35 5.72 8.43 -39.29 -0.33 5.38 16 47 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 49 H 0.39 9.38 7.90 -40.82 -0.32 9.06 16 50 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 393.00 15.07 5.92 5.92 Total: -1.00 -32.88 393.00 -9.21 -42.09 By element: Atomic # 1 Polarization: 21.90 SS G_CDS: -8.39 Total: 13.51 kcal Atomic # 6 Polarization: 7.14 SS G_CDS: -0.52 Total: 6.62 kcal Atomic # 7 Polarization: -59.60 SS G_CDS: -1.36 Total: -60.96 kcal Atomic # 8 Polarization: -23.35 SS G_CDS: 0.16 Total: -23.19 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.88 -9.21 -42.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001127067117.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.011 kcal (2) G-P(sol) polarization free energy of solvation -32.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.95 seconds