Wall clock time and date at job start Fri Apr 10 2020 14:48:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52994 * 109.47018 * 2 1 4 4 N 1.46897 * 109.47101 * 120.00028 * 2 1 3 5 5 C 1.47842 * 111.00167 * 47.82639 * 4 2 1 6 6 C 1.54910 * 104.79985 * 146.36260 * 5 4 2 7 7 C 1.55137 * 101.64838 * 322.93337 * 6 5 4 8 8 C 1.47445 * 110.99850 * 168.67015 * 4 2 1 9 9 H 1.08997 * 109.89066 * 117.17569 * 8 4 2 10 10 C 1.50697 * 109.88822 * 356.14727 * 8 4 2 11 11 O 1.21280 * 120.00172 * 296.92104 * 10 8 4 12 12 N 1.34775 * 120.00082 * 116.92635 * 10 8 4 13 13 C 1.46498 * 120.00116 * 180.02562 * 12 10 8 14 14 C 1.52998 * 109.47247 * 179.97438 * 13 12 10 15 15 N 1.46892 * 109.47274 * 179.97438 * 14 13 12 16 16 C 1.46908 * 110.99869 * 179.97438 * 15 14 13 17 17 C 1.50708 * 109.46880 * 179.97438 * 16 15 14 18 18 O 1.21286 * 119.99957 * 0.02562 * 17 16 15 19 19 N 1.34769 * 119.99746 * 180.02562 * 17 16 15 20 20 C 1.37102 * 119.99892 * 180.02562 * 19 17 16 21 21 H 1.07995 * 119.99920 * 0.02562 * 20 19 17 22 22 C 1.38952 * 120.00023 * 180.02562 * 20 19 17 23 23 N 1.31413 * 120.00094 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00054 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.47214 * 60.00082 * 24 22 20 26 26 H 1.48504 * 109.47287 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.47100 * 299.99982 * 24 22 20 28 28 H 1.08994 * 109.46962 * 299.99966 * 1 2 3 29 29 H 1.09002 * 109.47170 * 60.00020 * 1 2 3 30 30 H 1.08996 * 109.47091 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.46962 * 240.00034 * 2 1 3 32 32 H 1.08999 * 109.47367 * 185.67135 * 3 2 1 33 33 H 1.09005 * 109.47492 * 305.67734 * 3 2 1 34 34 H 1.09003 * 109.47380 * 65.67175 * 3 2 1 35 35 H 1.09000 * 110.37710 * 265.19571 * 5 4 2 36 36 H 1.09004 * 110.37304 * 27.53463 * 5 4 2 37 37 H 1.08995 * 110.98900 * 81.02145 * 6 5 4 38 38 H 1.08990 * 110.98943 * 204.80356 * 6 5 4 39 39 H 1.09006 * 110.70667 * 277.26435 * 7 6 5 40 40 H 1.09005 * 110.70765 * 154.03891 * 7 6 5 41 41 H 0.97003 * 119.99633 * 359.97438 * 12 10 8 42 42 H 1.08998 * 109.47205 * 299.99598 * 13 12 10 43 43 H 1.08996 * 109.47102 * 60.00064 * 13 12 10 44 44 H 1.09004 * 109.47151 * 300.00160 * 14 13 12 45 45 H 1.09004 * 109.47051 * 59.99405 * 14 13 12 46 46 H 1.00898 * 111.00181 * 56.05000 * 15 14 13 47 47 H 1.08990 * 109.47209 * 299.99710 * 16 15 14 48 48 H 1.09002 * 109.47085 * 60.00312 * 16 15 14 49 49 H 0.96996 * 120.00568 * 0.02562 * 19 17 16 50 50 H 0.97003 * 120.00135 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 1.3227 -1.9826 1.3881 6 6 2.3867 -2.9197 2.0121 7 6 3.6729 -2.4716 1.2693 8 6 3.4684 -0.9508 1.1060 9 1 3.9922 -0.4166 1.8986 10 6 3.9828 -0.5057 -0.2387 11 8 3.5774 -1.0388 -1.2499 12 7 4.8935 0.4846 -0.3178 13 6 5.3932 0.9177 -1.6250 14 6 6.4081 2.0466 -1.4347 15 7 6.9096 2.4804 -2.7454 16 6 7.8883 3.5665 -2.6015 17 6 8.3797 3.9837 -3.9638 18 8 7.9559 3.4310 -4.9568 19 7 9.2900 4.9708 -4.0786 20 6 9.7366 5.3507 -5.3179 21 1 9.3586 4.8592 -6.2021 22 6 10.6755 6.3681 -5.4362 23 7 11.1351 6.9666 -4.3603 24 14 11.2835 6.8862 -7.1248 25 1 10.1363 7.3602 -7.9400 26 1 12.2735 7.9835 -6.9793 27 1 11.9235 5.7274 -7.7974 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 3.1253 1.4442 -0.1016 33 1 1.5961 1.9849 -0.8348 34 1 1.7620 1.9262 0.9364 35 1 0.4784 -1.8620 2.0668 36 1 0.9863 -2.3760 0.4288 37 1 2.4760 -2.7493 3.0849 38 1 2.1579 -3.9645 1.8024 39 1 3.7451 -2.9575 0.2962 40 1 4.5577 -2.6791 1.8713 41 1 5.2176 0.9111 0.4910 42 1 5.8735 0.0777 -2.1269 43 1 4.5614 1.2759 -2.2315 44 1 5.9275 2.8865 -0.9330 45 1 7.2400 1.6888 -0.8280 46 1 6.1503 2.7562 -3.3499 47 1 7.4175 4.4169 -2.1086 48 1 8.7304 3.2197 -2.0024 49 1 9.6292 5.4126 -3.2844 50 1 11.7903 7.6771 -4.4429 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001127067117.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:48:08 Heat of formation + Delta-G solvation = -79.855514 kcal Electronic energy + Delta-G solvation = -27871.868436 eV Core-core repulsion = 23933.273752 eV Total energy + Delta-G solvation = -3938.594683 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.211 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -42.10880 -40.18097 -39.05862 -37.42659 -36.01865 -35.44187 -35.29814 -33.27893 -31.56315 -30.21140 -29.94052 -27.91266 -27.60890 -25.69876 -23.88402 -23.02243 -22.40168 -21.78261 -21.10856 -20.62533 -19.92341 -18.24970 -17.88824 -17.67229 -17.38466 -16.94773 -16.66513 -16.39293 -16.17979 -15.84714 -15.50576 -15.19076 -15.04835 -14.83022 -14.50145 -14.38269 -14.10783 -13.86311 -13.52405 -13.37022 -13.31892 -13.16380 -13.06085 -12.93841 -12.77100 -12.62444 -12.47458 -12.43167 -12.20838 -12.12697 -12.08006 -11.87783 -11.78025 -11.70132 -11.51192 -11.13849 -10.37655 -10.08631 -10.02440 -9.39977 -9.25597 -8.47304 -5.96044 1.39484 1.41659 1.42026 1.52358 1.96660 2.04613 2.29965 2.90519 3.00442 3.19964 3.45109 3.56503 3.67670 3.77552 3.90613 4.07974 4.08384 4.10870 4.16775 4.30954 4.35280 4.44720 4.48232 4.49806 4.51765 4.60308 4.71768 4.75328 4.82252 4.86772 4.87552 4.89779 4.93142 5.01088 5.01961 5.06506 5.19837 5.27819 5.30429 5.38734 5.40360 5.83385 5.87730 5.98459 6.06074 6.30154 6.44563 6.59484 7.11940 7.13670 7.55433 8.11100 8.69669 Molecular weight = 326.21amu Principal moments of inertia in cm(-1) A = 0.032392 B = 0.001755 C = 0.001727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.215917 B =15948.359936 C =16211.425549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.029 3.971 3 C -0.157 4.157 4 N -0.497 5.497 5 C 0.034 3.966 6 C -0.119 4.119 7 C -0.130 4.130 8 C 0.053 3.947 9 H 0.127 0.873 10 C 0.507 3.493 11 O -0.574 6.574 12 N -0.710 5.710 13 C 0.129 3.871 14 C 0.059 3.941 15 N -0.686 5.686 16 C 0.068 3.932 17 C 0.434 3.566 18 O -0.626 6.626 19 N -0.571 5.571 20 C -0.336 4.336 21 H 0.078 0.922 22 C -0.012 4.012 23 N -0.918 5.918 24 Si 0.992 3.008 25 H -0.272 1.272 26 H -0.269 1.269 27 H -0.273 1.273 28 H 0.067 0.933 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.051 0.949 34 H 0.069 0.931 35 H 0.097 0.903 36 H 0.037 0.963 37 H 0.094 0.906 38 H 0.086 0.914 39 H 0.055 0.945 40 H 0.102 0.898 41 H 0.418 0.582 42 H 0.057 0.943 43 H 0.054 0.946 44 H 0.057 0.943 45 H 0.094 0.906 46 H 0.345 0.655 47 H 0.073 0.927 48 H 0.109 0.891 49 H 0.398 0.602 50 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.196 -14.178 20.872 30.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.079 4.079 3 C -0.215 4.215 4 N -0.223 5.223 5 C -0.093 4.093 6 C -0.157 4.157 7 C -0.169 4.169 8 C -0.058 4.058 9 H 0.145 0.855 10 C 0.294 3.706 11 O -0.454 6.454 12 N -0.363 5.363 13 C 0.004 3.996 14 C -0.070 4.070 15 N -0.319 5.319 16 C -0.064 4.064 17 C 0.222 3.778 18 O -0.513 6.513 19 N -0.209 5.209 20 C -0.466 4.466 21 H 0.096 0.904 22 C -0.212 4.212 23 N -0.559 5.559 24 Si 0.816 3.184 25 H -0.198 1.198 26 H -0.194 1.194 27 H -0.198 1.198 28 H 0.086 0.914 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.070 0.930 34 H 0.088 0.912 35 H 0.115 0.885 36 H 0.056 0.944 37 H 0.113 0.887 38 H 0.104 0.896 39 H 0.074 0.926 40 H 0.120 0.880 41 H 0.256 0.744 42 H 0.075 0.925 43 H 0.072 0.928 44 H 0.075 0.925 45 H 0.113 0.887 46 H 0.163 0.837 47 H 0.091 0.909 48 H 0.127 0.873 49 H 0.232 0.768 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -17.225 -14.899 19.906 30.248 hybrid contribution 0.291 1.089 -1.081 1.562 sum -16.935 -13.810 18.825 28.842 Atomic orbital electron populations 1.21863 0.93449 1.02169 1.02365 1.22479 0.96861 0.95824 0.92762 1.22125 1.02333 0.94832 1.02193 1.64296 1.00876 1.20889 1.36236 1.23216 0.98229 0.88055 0.99803 1.22708 0.92597 0.99530 1.00882 1.22791 1.00838 0.91926 1.01335 1.22813 0.91174 0.98541 0.93229 0.85546 1.21395 0.78209 0.78709 0.92239 1.90629 1.58303 1.57059 1.39397 1.45968 1.43095 1.37317 1.09951 1.21024 0.96328 0.97275 0.84979 1.22073 0.97848 0.96561 0.90557 1.59915 1.18964 1.39754 1.13231 1.21528 0.97632 0.94020 0.93221 1.20938 0.82679 0.82082 0.92097 1.90501 1.61800 1.57876 1.41085 1.41910 1.37710 1.32430 1.08831 1.19625 1.22710 1.17912 0.86327 0.90443 1.26026 0.96427 0.95942 1.02803 1.69657 1.31131 1.25205 1.29915 0.84999 0.78108 0.77991 0.77300 1.19761 1.19367 1.19833 0.91396 0.92378 0.92284 0.92248 0.91504 0.92973 0.91154 0.88525 0.94448 0.88697 0.89568 0.92639 0.87977 0.74409 0.92479 0.92799 0.92503 0.88745 0.83658 0.90925 0.87255 0.76829 0.91244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 8.83 71.98 0.64 -1.65 16 2 C 0.03 0.56 2.11 44.92 0.09 0.65 16 3 C -0.16 -2.83 8.97 71.98 0.65 -2.19 16 4 N -0.50 -7.93 5.03 -839.86 -4.22 -12.16 16 5 C 0.03 0.46 5.30 86.77 0.46 0.92 16 6 C -0.12 -1.19 7.08 31.98 0.23 -0.96 16 7 C -0.13 -1.69 6.43 31.77 0.20 -1.49 16 8 C 0.05 0.78 3.63 44.51 0.16 0.94 16 9 H 0.13 1.19 7.94 -2.39 -0.02 1.17 16 10 C 0.51 10.30 3.93 87.66 0.34 10.65 16 11 O -0.57 -16.88 13.84 -3.03 -0.04 -16.92 16 12 N -0.71 -11.52 3.82 -463.08 -1.77 -13.29 16 13 C 0.13 2.76 5.93 86.38 0.51 3.27 16 14 C 0.06 1.16 5.80 86.30 0.50 1.66 16 15 N -0.69 -20.62 6.13 -517.92 -3.17 -23.79 16 16 C 0.07 2.20 6.17 85.56 0.53 2.73 16 17 C 0.43 20.47 7.82 87.66 0.69 21.16 16 18 O -0.63 -34.96 15.78 -3.05 -0.05 -35.01 16 19 N -0.57 -29.05 5.29 -306.99 -1.62 -30.67 16 20 C -0.34 -19.10 9.68 84.04 0.81 -18.29 16 21 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 22 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 23 N -0.92 -49.10 13.05 21.66 0.28 -48.81 16 24 Si 0.99 42.90 29.55 68.60 2.03 44.93 16 25 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 26 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 27 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 28 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.06 0.90 6.41 -2.39 -0.02 0.88 16 31 H 0.06 1.57 4.82 -2.98 -0.01 1.56 16 32 H 0.07 1.19 4.38 -2.39 -0.01 1.18 16 33 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 34 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.04 0.62 6.94 -2.39 -0.02 0.61 16 37 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.05 1.02 7.43 -2.38 -0.02 1.00 16 40 H 0.10 0.89 8.14 -2.38 -0.02 0.87 16 41 H 0.42 3.97 8.33 -92.71 -0.77 3.20 16 42 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 44 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 45 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 46 H 0.34 11.19 8.43 -89.70 -0.76 10.43 16 47 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 48 H 0.11 3.09 8.14 -2.39 -0.02 3.07 16 49 H 0.40 18.96 7.90 -92.71 -0.73 18.23 16 50 H 0.28 13.94 8.31 -92.71 -0.77 13.17 16 Total: -1.00 -73.44 393.00 -3.58 -77.02 By element: Atomic # 1 Polarization: 42.76 SS G_CDS: -1.30 Total: 41.46 kcal Atomic # 6 Polarization: 10.96 SS G_CDS: 6.28 Total: 17.24 kcal Atomic # 7 Polarization: -118.22 SS G_CDS: -10.50 Total: -128.72 kcal Atomic # 8 Polarization: -51.84 SS G_CDS: -0.09 Total: -51.93 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Total: -73.44 -3.58 -77.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001127067117.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.831 kcal (2) G-P(sol) polarization free energy of solvation -73.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.82 seconds