Wall clock time and date at job start Fri Apr 10 2020 14:49:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47344 * 2 1 4 4 N 1.46901 * 109.46961 * 179.97438 * 3 2 1 5 5 C 1.46902 * 110.99576 * 180.02562 * 4 3 2 6 6 C 1.53003 * 109.46742 * 180.02562 * 5 4 3 7 7 N 1.46498 * 109.47074 * 179.97438 * 6 5 4 8 8 C 1.34779 * 120.00154 * 179.97438 * 7 6 5 9 9 O 1.21348 * 119.99768 * 0.02562 * 8 7 6 10 10 C 1.49450 * 120.00032 * 180.02562 * 8 7 6 11 11 O 1.21356 * 119.99981 * 353.51350 * 10 8 7 12 12 N 1.34774 * 120.00149 * 173.78998 * 10 8 7 13 13 C 1.47074 * 120.88489 * 180.82986 * 12 10 8 14 14 C 1.53700 * 108.27666 * 128.75482 * 13 12 10 15 15 N 1.46902 * 109.25471 * 54.08571 * 14 13 12 16 16 C 1.46896 * 110.99756 * 172.60834 * 15 14 13 17 17 C 1.50697 * 109.47435 * 294.29945 * 16 15 14 18 18 H 1.08007 * 119.99537 * 0.02562 * 17 16 15 19 19 C 1.37877 * 120.00581 * 180.02562 * 17 16 15 20 20 N 1.31519 * 119.99931 * 180.02562 * 19 17 16 21 21 Si 1.86793 * 119.99627 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.47001 * 90.00553 * 21 19 17 23 23 H 1.48501 * 109.47306 * 210.00124 * 21 19 17 24 24 H 1.48501 * 109.47536 * 330.00180 * 21 19 17 25 25 C 1.46893 * 111.26804 * 296.75687 * 15 14 13 26 26 C 1.47082 * 120.87694 * 1.11057 * 12 10 8 27 27 H 1.08992 * 109.47336 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46934 * 299.99879 * 1 2 3 29 29 H 1.09001 * 109.47051 * 59.99130 * 1 2 3 30 30 H 1.09008 * 109.46820 * 240.00347 * 2 1 3 31 31 H 1.08998 * 109.47363 * 120.00455 * 2 1 3 32 32 H 1.09002 * 109.46371 * 60.00841 * 3 2 1 33 33 H 1.08998 * 109.47262 * 300.00517 * 3 2 1 34 34 H 1.00896 * 111.00128 * 303.96016 * 4 3 2 35 35 H 1.08997 * 109.47491 * 60.00478 * 5 4 3 36 36 H 1.08996 * 109.47148 * 300.00070 * 5 4 3 37 37 H 1.09003 * 109.47166 * 60.00537 * 6 5 4 38 38 H 1.09001 * 109.47490 * 299.99958 * 6 5 4 39 39 H 0.97003 * 119.99969 * 0.02562 * 7 6 5 40 40 H 1.08996 * 109.63545 * 248.52272 * 13 12 10 41 41 H 1.09000 * 109.62802 * 9.11122 * 13 12 10 42 42 H 1.09001 * 109.64614 * 294.08434 * 14 13 12 43 43 H 1.09001 * 109.41940 * 173.95105 * 14 13 12 44 44 H 1.09000 * 109.47800 * 54.30221 * 16 15 14 45 45 H 1.09008 * 109.46958 * 174.30245 * 16 15 14 46 46 H 0.97005 * 119.99164 * 179.97438 * 20 19 17 47 47 H 1.09006 * 109.49533 * 303.14448 * 25 15 14 48 48 H 1.08999 * 109.49656 * 183.06504 * 25 15 14 49 49 H 1.08992 * 109.62979 * 350.89963 * 26 12 10 50 50 H 1.09003 * 109.62769 * 111.48017 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4424 0.0006 5 6 4.0355 2.8139 0.0013 6 6 5.5650 2.7730 0.0012 7 7 6.0900 4.1406 0.0012 8 6 7.4212 4.3514 0.0018 9 8 8.1848 3.4083 0.0017 10 6 7.9569 5.7466 0.0024 11 8 7.1995 6.6874 -0.1164 12 7 9.2816 5.9599 0.1291 13 6 9.8278 7.3253 0.1503 14 6 10.7375 7.4614 1.3817 15 7 11.7433 6.3909 1.3617 16 6 12.7399 6.5851 2.4233 17 6 13.5321 7.8366 2.1457 18 1 13.3165 8.4288 1.2686 19 6 14.5322 8.2258 3.0114 20 7 15.2232 9.3183 2.7693 21 14 14.9047 7.2020 4.5287 22 1 15.9304 6.1807 4.1972 23 1 15.4158 8.0845 5.6082 24 1 13.6640 6.5269 4.9873 25 6 11.1148 5.0673 1.4655 26 6 10.2199 4.8331 0.2438 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5140 -0.8899 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 1.6768 1.9562 0.8901 33 1 1.6767 1.9564 -0.8899 34 1 3.8703 0.9163 0.7821 35 1 3.6857 3.3370 0.8912 36 1 3.6864 3.3375 -0.8887 37 1 5.9145 2.2501 -0.8891 38 1 5.9145 2.2492 0.8910 39 1 5.4796 4.8945 0.0016 40 1 10.4055 7.5028 -0.7567 41 1 9.0119 8.0451 0.2150 42 1 10.1396 7.3818 2.2896 43 1 11.2367 8.4301 1.3582 44 1 12.2338 6.6811 3.3839 45 1 13.4128 5.7279 2.4512 46 1 15.9266 9.5922 3.3786 47 1 10.5116 5.0210 2.3723 48 1 11.8876 4.2995 1.5027 49 1 9.6634 3.9045 0.3700 50 1 10.8346 4.7756 -0.6546 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331165070.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:49:18 Heat of formation + Delta-G solvation = -43.774967 kcal Electronic energy + Delta-G solvation = -27488.823264 eV Core-core repulsion = 23551.793150 eV Total energy + Delta-G solvation = -3937.030114 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.211 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.99336 -38.97672 -37.69702 -37.65810 -35.65488 -34.40540 -33.21094 -32.36413 -30.82117 -29.44491 -28.84438 -26.32603 -25.41453 -24.14259 -23.09381 -22.59241 -21.76565 -21.41855 -20.72766 -19.44348 -17.72839 -17.13831 -16.90533 -16.74396 -16.23396 -16.12967 -15.44574 -15.21829 -14.86065 -14.68171 -14.62750 -14.56404 -14.32113 -13.96345 -13.94589 -13.50224 -13.44603 -13.01859 -12.92409 -12.46765 -12.40664 -12.36911 -12.13299 -11.92048 -11.62502 -11.47313 -11.44901 -11.25838 -11.10529 -10.88866 -10.78697 -10.56143 -10.39281 -9.94274 -9.61402 -9.38681 -9.08611 -9.04871 -8.64757 -8.59299 -7.45153 -6.08341 -4.06183 1.30712 2.14507 3.10564 3.26431 3.26594 3.34220 3.35884 3.73936 4.17568 4.29898 4.39345 4.45081 4.48739 4.60286 4.70187 4.82497 4.92653 5.00097 5.13953 5.21750 5.23487 5.26532 5.35368 5.38107 5.42385 5.51683 5.54232 5.59697 5.63765 5.71665 5.74941 5.76633 5.87683 6.17723 6.27679 6.35060 6.35912 6.42826 6.52636 6.73831 6.78262 6.83783 6.92928 7.29400 7.53718 7.60896 7.81888 7.90405 7.96578 8.60861 8.99086 9.53194 11.04520 Molecular weight = 326.21amu Principal moments of inertia in cm(-1) A = 0.028337 B = 0.001834 C = 0.001775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.882916 B =15267.108826 C =15774.444156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C 0.058 3.942 4 N -0.687 5.687 5 C 0.047 3.953 6 C 0.118 3.882 7 N -0.701 5.701 8 C 0.514 3.486 9 O -0.506 6.506 10 C 0.502 3.498 11 O -0.534 6.534 12 N -0.569 5.569 13 C 0.110 3.890 14 C 0.052 3.948 15 N -0.528 5.528 16 C 0.162 3.838 17 C -0.512 4.512 18 H 0.082 0.918 19 C 0.070 3.930 20 N -0.899 5.899 21 Si 0.875 3.125 22 H -0.275 1.275 23 H -0.286 1.286 24 H -0.269 1.269 25 C 0.039 3.961 26 C 0.059 3.941 27 H 0.057 0.943 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.072 0.928 31 H 0.061 0.939 32 H 0.031 0.969 33 H 0.074 0.926 34 H 0.344 0.656 35 H 0.040 0.960 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.073 0.927 39 H 0.413 0.587 40 H 0.082 0.918 41 H 0.092 0.908 42 H 0.025 0.975 43 H 0.105 0.895 44 H -0.012 1.012 45 H 0.026 0.974 46 H 0.264 0.736 47 H 0.025 0.975 48 H 0.083 0.917 49 H 0.149 0.851 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.991 -16.486 -5.230 32.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.071 4.071 4 N -0.319 5.319 5 C -0.083 4.083 6 C -0.006 4.006 7 N -0.355 5.355 8 C 0.296 3.704 9 O -0.382 6.382 10 C 0.284 3.716 11 O -0.413 6.413 12 N -0.301 5.301 13 C -0.011 4.011 14 C -0.077 4.077 15 N -0.253 5.253 16 C 0.036 3.964 17 C -0.550 4.550 18 H 0.100 0.900 19 C -0.132 4.132 20 N -0.537 5.537 21 Si 0.702 3.298 22 H -0.201 1.201 23 H -0.212 1.212 24 H -0.194 1.194 25 C -0.090 4.090 26 C -0.062 4.062 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.091 0.909 31 H 0.080 0.920 32 H 0.049 0.951 33 H 0.092 0.908 34 H 0.162 0.838 35 H 0.058 0.942 36 H 0.101 0.899 37 H 0.103 0.897 38 H 0.091 0.909 39 H 0.249 0.751 40 H 0.100 0.900 41 H 0.110 0.890 42 H 0.044 0.956 43 H 0.123 0.877 44 H 0.006 0.994 45 H 0.044 0.956 46 H 0.074 0.926 47 H 0.043 0.957 48 H 0.101 0.899 49 H 0.165 0.835 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -26.389 -16.595 -6.346 31.813 hybrid contribution -0.367 0.183 2.609 2.641 sum -26.756 -16.412 -3.737 31.610 Atomic orbital electron populations 1.21730 0.95378 1.01980 1.01897 1.21511 0.95762 0.96085 1.02807 1.22033 0.86737 0.97442 1.00852 1.60334 1.08001 1.13116 1.50441 1.22093 0.93667 0.90748 1.01799 1.21367 0.92928 0.82528 1.03749 1.45660 1.06606 1.09848 1.73377 1.20330 0.82940 0.90058 0.77079 1.90383 1.54865 1.44427 1.48547 1.19848 0.83397 0.88909 0.79430 1.90737 1.56921 1.43553 1.50062 1.48193 1.05003 1.09613 1.67329 1.22160 0.97231 0.81597 1.00158 1.22452 0.92505 0.98245 0.94523 1.61932 1.13692 0.99911 1.49744 1.20180 0.90329 0.98165 0.87732 1.21019 1.16419 1.07144 1.10426 0.90044 1.24891 0.95725 0.94949 0.97666 1.69896 1.22596 1.23573 1.37684 0.86865 0.78981 0.80556 0.83360 1.20100 1.21195 1.19366 1.22470 0.96957 0.93728 0.95862 1.23369 0.92207 0.91399 0.99188 0.92380 0.92799 0.92545 0.90925 0.92035 0.95054 0.90756 0.83768 0.94214 0.89948 0.89731 0.90886 0.75083 0.89977 0.88993 0.95635 0.87698 0.99390 0.95576 0.92626 0.95705 0.89914 0.83458 0.90615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.58 9.91 37.16 0.37 -0.21 16 2 C -0.12 -0.54 6.19 -26.73 -0.17 -0.71 16 3 C 0.06 0.28 5.69 -3.82 -0.02 0.26 16 4 N -0.69 -3.78 6.50 -113.78 -0.74 -4.52 16 5 C 0.05 0.26 5.80 -3.82 -0.02 0.23 16 6 C 0.12 0.86 5.93 -4.04 -0.02 0.83 16 7 N -0.70 -6.39 5.55 -60.73 -0.34 -6.73 16 8 C 0.51 6.40 7.81 -11.58 -0.09 6.31 16 9 O -0.51 -6.99 13.03 5.50 0.07 -6.92 16 10 C 0.50 7.34 7.77 -11.59 -0.09 7.25 16 11 O -0.53 -8.51 15.95 5.49 0.09 -8.42 16 12 N -0.57 -8.82 3.00 -172.69 -0.52 -9.34 16 13 C 0.11 1.78 6.62 -3.37 -0.02 1.76 16 14 C 0.05 0.98 5.47 -3.46 -0.02 0.96 16 15 N -0.53 -10.87 4.62 -235.47 -1.09 -11.96 16 16 C 0.16 3.88 3.79 -4.98 -0.02 3.86 16 17 C -0.51 -14.28 8.96 -34.44 -0.31 -14.58 16 18 H 0.08 2.45 7.37 -52.48 -0.39 2.06 16 19 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 20 N -0.90 -27.21 13.96 55.43 0.77 -26.44 16 21 Si 0.88 21.33 27.47 -169.99 -4.67 16.66 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 24 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 25 C 0.04 0.67 5.62 -3.70 -0.02 0.65 16 26 C 0.06 0.90 6.35 -3.60 -0.02 0.87 16 27 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 28 H 0.05 0.20 8.14 -51.93 -0.42 -0.23 16 29 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.07 0.37 8.14 -51.92 -0.42 -0.06 16 31 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 32 H 0.03 0.15 8.14 -51.93 -0.42 -0.27 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.34 1.62 8.73 -39.29 -0.34 1.28 16 35 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 36 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.41 3.29 7.96 -40.82 -0.32 2.96 16 40 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 41 H 0.09 1.42 7.07 -51.93 -0.37 1.05 16 42 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.10 2.17 6.67 -51.93 -0.35 1.83 16 44 H -0.01 -0.28 7.18 -51.93 -0.37 -0.66 16 45 H 0.03 0.63 7.40 -51.92 -0.38 0.24 16 46 H 0.26 7.49 8.31 -40.82 -0.34 7.16 16 47 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.08 1.34 7.99 -51.93 -0.41 0.93 16 49 H 0.15 2.14 3.93 -56.51 -0.22 1.92 16 50 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 LS Contribution 396.96 15.07 5.98 5.98 Total: -1.00 -31.91 396.96 -9.66 -41.58 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -8.67 Total: 0.73 kcal Atomic # 6 Polarization: 9.94 SS G_CDS: -0.56 Total: 9.38 kcal Atomic # 7 Polarization: -57.08 SS G_CDS: -1.91 Total: -58.99 kcal Atomic # 8 Polarization: -15.50 SS G_CDS: 0.16 Total: -15.35 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.67 Total: 16.66 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -31.91 -9.66 -41.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331165070.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.199 kcal (2) G-P(sol) polarization free energy of solvation -31.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds