Wall clock time and date at job start Fri Apr 10 2020 14:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47344 * 2 1 4 4 N 1.46901 * 109.46961 * 179.97438 * 3 2 1 5 5 C 1.46902 * 110.99576 * 180.02562 * 4 3 2 6 6 C 1.53003 * 109.46742 * 180.02562 * 5 4 3 7 7 N 1.46498 * 109.47074 * 179.97438 * 6 5 4 8 8 C 1.34779 * 120.00154 * 179.97438 * 7 6 5 9 9 O 1.21348 * 119.99768 * 0.02562 * 8 7 6 10 10 C 1.49450 * 120.00032 * 180.02562 * 8 7 6 11 11 O 1.21356 * 119.99981 * 353.51350 * 10 8 7 12 12 N 1.34774 * 120.00149 * 173.78998 * 10 8 7 13 13 C 1.47074 * 120.88489 * 180.82986 * 12 10 8 14 14 C 1.53700 * 108.27666 * 128.75482 * 13 12 10 15 15 N 1.46902 * 109.25471 * 54.08571 * 14 13 12 16 16 C 1.46896 * 110.99756 * 172.60834 * 15 14 13 17 17 C 1.50697 * 109.47435 * 294.29945 * 16 15 14 18 18 H 1.08007 * 119.99537 * 0.02562 * 17 16 15 19 19 C 1.37877 * 120.00581 * 180.02562 * 17 16 15 20 20 N 1.31519 * 119.99931 * 180.02562 * 19 17 16 21 21 Si 1.86793 * 119.99627 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.47001 * 90.00553 * 21 19 17 23 23 H 1.48501 * 109.47306 * 210.00124 * 21 19 17 24 24 H 1.48501 * 109.47536 * 330.00180 * 21 19 17 25 25 C 1.46893 * 111.26804 * 296.75687 * 15 14 13 26 26 C 1.47082 * 120.87694 * 1.11057 * 12 10 8 27 27 H 1.08992 * 109.47336 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46934 * 299.99879 * 1 2 3 29 29 H 1.09001 * 109.47051 * 59.99130 * 1 2 3 30 30 H 1.09008 * 109.46820 * 240.00347 * 2 1 3 31 31 H 1.08998 * 109.47363 * 120.00455 * 2 1 3 32 32 H 1.09002 * 109.46371 * 60.00841 * 3 2 1 33 33 H 1.08998 * 109.47262 * 300.00517 * 3 2 1 34 34 H 1.00896 * 111.00128 * 303.96016 * 4 3 2 35 35 H 1.08997 * 109.47491 * 60.00478 * 5 4 3 36 36 H 1.08996 * 109.47148 * 300.00070 * 5 4 3 37 37 H 1.09003 * 109.47166 * 60.00537 * 6 5 4 38 38 H 1.09001 * 109.47490 * 299.99958 * 6 5 4 39 39 H 0.97003 * 119.99969 * 0.02562 * 7 6 5 40 40 H 1.08996 * 109.63545 * 248.52272 * 13 12 10 41 41 H 1.09000 * 109.62802 * 9.11122 * 13 12 10 42 42 H 1.09001 * 109.64614 * 294.08434 * 14 13 12 43 43 H 1.09001 * 109.41940 * 173.95105 * 14 13 12 44 44 H 1.09000 * 109.47800 * 54.30221 * 16 15 14 45 45 H 1.09008 * 109.46958 * 174.30245 * 16 15 14 46 46 H 0.97005 * 119.99164 * 179.97438 * 20 19 17 47 47 H 1.09006 * 109.49533 * 303.14448 * 25 15 14 48 48 H 1.08999 * 109.49656 * 183.06504 * 25 15 14 49 49 H 1.08992 * 109.62979 * 350.89963 * 26 12 10 50 50 H 1.09003 * 109.62769 * 111.48017 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4424 0.0006 5 6 4.0355 2.8139 0.0013 6 6 5.5650 2.7730 0.0012 7 7 6.0900 4.1406 0.0012 8 6 7.4212 4.3514 0.0018 9 8 8.1848 3.4083 0.0017 10 6 7.9569 5.7466 0.0024 11 8 7.1995 6.6874 -0.1164 12 7 9.2816 5.9599 0.1291 13 6 9.8278 7.3253 0.1503 14 6 10.7375 7.4614 1.3817 15 7 11.7433 6.3909 1.3617 16 6 12.7399 6.5851 2.4233 17 6 13.5321 7.8366 2.1457 18 1 13.3165 8.4288 1.2686 19 6 14.5322 8.2258 3.0114 20 7 15.2232 9.3183 2.7693 21 14 14.9047 7.2020 4.5287 22 1 15.9304 6.1807 4.1972 23 1 15.4158 8.0845 5.6082 24 1 13.6640 6.5269 4.9873 25 6 11.1148 5.0673 1.4655 26 6 10.2199 4.8331 0.2438 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5140 -0.8899 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 1.6768 1.9562 0.8901 33 1 1.6767 1.9564 -0.8899 34 1 3.8703 0.9163 0.7821 35 1 3.6857 3.3370 0.8912 36 1 3.6864 3.3375 -0.8887 37 1 5.9145 2.2501 -0.8891 38 1 5.9145 2.2492 0.8910 39 1 5.4796 4.8945 0.0016 40 1 10.4055 7.5028 -0.7567 41 1 9.0119 8.0451 0.2150 42 1 10.1396 7.3818 2.2896 43 1 11.2367 8.4301 1.3582 44 1 12.2338 6.6811 3.3839 45 1 13.4128 5.7279 2.4512 46 1 15.9266 9.5922 3.3786 47 1 10.5116 5.0210 2.3723 48 1 11.8876 4.2995 1.5027 49 1 9.6634 3.9045 0.3700 50 1 10.8346 4.7756 -0.6546 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331165070.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:49:16 Heat of formation + Delta-G solvation = -69.475533 kcal Electronic energy + Delta-G solvation = -27489.937724 eV Core-core repulsion = 23551.793150 eV Total energy + Delta-G solvation = -3938.144574 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.211 amu Computer time = 1.99 seconds Orbital eigenvalues (eV) -42.08804 -40.10284 -39.04858 -38.18742 -36.56666 -35.70303 -34.41449 -33.70087 -32.18862 -30.70668 -29.93491 -27.73740 -26.29067 -25.21267 -24.27648 -23.38054 -23.00921 -22.11915 -21.94704 -20.70491 -19.11439 -18.60573 -18.21903 -17.48007 -17.17712 -17.03675 -16.50307 -16.23785 -16.13397 -15.97564 -15.70175 -15.51765 -15.39452 -15.16973 -14.96923 -14.86136 -14.45809 -14.31097 -13.96022 -13.71306 -13.40923 -13.30329 -12.88951 -12.84590 -12.79560 -12.61580 -12.44396 -12.35781 -12.27289 -12.17698 -11.94433 -11.86007 -11.79699 -11.59690 -11.46797 -10.78297 -10.42453 -10.22768 -9.94550 -9.47376 -9.09287 -8.28148 -6.31638 0.23910 1.15009 1.35440 1.36312 1.46580 2.02235 2.29543 2.34382 3.04193 3.06759 3.15766 3.35991 3.80830 3.91083 4.00266 4.01577 4.11327 4.17748 4.20720 4.27399 4.37095 4.44975 4.49032 4.51152 4.65666 4.68505 4.77894 4.78759 4.81648 4.84640 4.88778 4.92822 4.93612 4.95862 5.07508 5.19923 5.21659 5.31157 5.36325 5.41386 5.51415 5.84373 5.94143 5.97554 6.16791 6.27280 6.37414 6.58980 6.60583 6.74382 6.83509 7.32029 8.88019 Molecular weight = 326.21amu Principal moments of inertia in cm(-1) A = 0.028337 B = 0.001834 C = 0.001775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.882916 B =15267.108826 C =15774.444156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C 0.060 3.940 4 N -0.695 5.695 5 C 0.055 3.945 6 C 0.121 3.879 7 N -0.683 5.683 8 C 0.517 3.483 9 O -0.520 6.520 10 C 0.503 3.497 11 O -0.548 6.548 12 N -0.577 5.577 13 C 0.121 3.879 14 C 0.057 3.943 15 N -0.541 5.541 16 C 0.171 3.829 17 C -0.517 4.517 18 H 0.042 0.958 19 C 0.010 3.990 20 N -0.946 5.946 21 Si 0.946 3.054 22 H -0.264 1.264 23 H -0.283 1.283 24 H -0.254 1.254 25 C 0.039 3.961 26 C 0.070 3.930 27 H 0.060 0.940 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.035 0.965 33 H 0.072 0.928 34 H 0.349 0.651 35 H 0.048 0.952 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.420 0.580 40 H 0.083 0.917 41 H 0.099 0.901 42 H 0.023 0.977 43 H 0.077 0.923 44 H -0.015 1.015 45 H 0.033 0.967 46 H 0.267 0.733 47 H 0.026 0.974 48 H 0.095 0.905 49 H 0.162 0.838 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.687 -18.737 -4.568 34.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.069 4.069 4 N -0.327 5.327 5 C -0.075 4.075 6 C -0.002 4.002 7 N -0.336 5.336 8 C 0.299 3.701 9 O -0.398 6.398 10 C 0.286 3.714 11 O -0.427 6.427 12 N -0.309 5.309 13 C -0.001 4.001 14 C -0.072 4.072 15 N -0.266 5.266 16 C 0.044 3.956 17 C -0.555 4.555 18 H 0.061 0.939 19 C -0.187 4.187 20 N -0.586 5.586 21 Si 0.770 3.230 22 H -0.189 1.189 23 H -0.209 1.209 24 H -0.178 1.178 25 C -0.090 4.090 26 C -0.051 4.051 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.053 0.947 33 H 0.090 0.910 34 H 0.168 0.832 35 H 0.066 0.934 36 H 0.103 0.897 37 H 0.097 0.903 38 H 0.094 0.906 39 H 0.258 0.742 40 H 0.101 0.899 41 H 0.117 0.883 42 H 0.041 0.959 43 H 0.096 0.904 44 H 0.003 0.997 45 H 0.052 0.948 46 H 0.076 0.924 47 H 0.044 0.956 48 H 0.113 0.887 49 H 0.178 0.822 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -28.146 -18.868 -5.700 34.361 hybrid contribution 0.061 0.918 2.313 2.489 sum -28.085 -17.950 -3.387 33.503 Atomic orbital electron populations 1.21724 0.94957 1.02206 1.02013 1.21478 0.96100 0.95764 1.02532 1.22028 0.86308 0.97689 1.00877 1.60329 1.08441 1.13092 1.50877 1.22001 0.92211 0.90990 1.02314 1.21450 0.94058 0.81116 1.03574 1.45620 1.05484 1.11105 1.71405 1.19883 0.83907 0.88654 0.77703 1.90355 1.55403 1.44188 1.49899 1.20236 0.82819 0.89895 0.78479 1.90729 1.57130 1.44392 1.50451 1.48226 1.05638 1.09167 1.67861 1.21939 0.96875 0.82676 0.98618 1.22342 0.92298 0.96667 0.95924 1.61849 1.14292 1.01945 1.48479 1.19950 0.90865 0.96240 0.88502 1.21244 1.16922 1.08280 1.09083 0.93944 1.25802 0.95525 0.96156 1.01231 1.70048 1.23594 1.25656 1.39342 0.85736 0.79437 0.78947 0.78919 1.18878 1.20869 1.17822 1.22582 0.97520 0.91866 0.96995 1.23365 0.91879 0.91664 0.98190 0.92130 0.92584 0.92523 0.91686 0.91798 0.94714 0.90998 0.83249 0.93415 0.89719 0.90323 0.90582 0.74213 0.89879 0.88258 0.95872 0.90442 0.99704 0.94848 0.92442 0.95569 0.88720 0.82175 0.90445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.91 71.98 0.71 -0.24 16 2 C -0.12 -0.89 6.19 30.59 0.19 -0.70 16 3 C 0.06 0.48 5.69 86.30 0.49 0.97 16 4 N -0.70 -6.33 6.50 -513.88 -3.34 -9.67 16 5 C 0.05 0.48 5.80 86.30 0.50 0.98 16 6 C 0.12 1.48 5.93 86.38 0.51 2.00 16 7 N -0.68 -10.90 5.55 -464.40 -2.58 -13.47 16 8 C 0.52 11.81 7.81 87.27 0.68 12.49 16 9 O -0.52 -13.24 13.03 -3.24 -0.04 -13.28 16 10 C 0.50 13.86 7.77 87.27 0.68 14.54 16 11 O -0.55 -16.61 15.95 -3.26 -0.05 -16.67 16 12 N -0.58 -17.12 3.00 -818.63 -2.46 -19.58 16 13 C 0.12 3.87 6.62 86.51 0.57 4.44 16 14 C 0.06 2.17 5.47 86.54 0.47 2.65 16 15 N -0.54 -22.11 4.62 -898.88 -4.15 -26.27 16 16 C 0.17 8.14 3.79 85.56 0.32 8.46 16 17 C -0.52 -29.52 8.96 25.60 0.23 -29.29 16 18 H 0.04 2.69 7.37 -2.91 -0.02 2.66 16 19 C 0.01 0.60 5.47 84.65 0.46 1.07 16 20 N -0.95 -58.69 13.96 21.45 0.30 -58.39 16 21 Si 0.95 43.76 27.47 68.60 1.88 45.64 16 22 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 23 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 24 H -0.25 -11.08 6.54 99.48 0.65 -10.43 16 25 C 0.04 1.27 5.62 86.38 0.49 1.76 16 26 C 0.07 1.99 6.35 86.35 0.55 2.53 16 27 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 28 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 29 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 30 H 0.06 0.58 8.14 -2.38 -0.02 0.57 16 31 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.03 0.26 8.14 -2.39 -0.02 0.24 16 33 H 0.07 0.61 8.14 -2.39 -0.02 0.60 16 34 H 0.35 2.61 8.73 -89.70 -0.78 1.83 16 35 H 0.05 0.36 8.14 -2.39 -0.02 0.34 16 36 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.42 5.69 7.96 -92.71 -0.74 4.95 16 40 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 41 H 0.10 3.02 7.07 -2.39 -0.02 3.01 16 42 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.08 3.37 6.67 -2.39 -0.02 3.36 16 44 H -0.01 -0.71 7.18 -2.39 -0.02 -0.72 16 45 H 0.03 1.54 7.40 -2.38 -0.02 1.53 16 46 H 0.27 15.44 8.31 -92.70 -0.77 14.67 16 47 H 0.03 0.86 8.14 -2.38 -0.02 0.84 16 48 H 0.09 2.87 7.99 -2.39 -0.02 2.85 16 49 H 0.16 4.30 3.93 -74.93 -0.29 4.00 16 50 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 Total: -1.00 -68.58 396.96 -4.50 -73.07 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: -0.92 Total: 16.95 kcal Atomic # 6 Polarization: 14.79 SS G_CDS: 6.86 Total: 21.66 kcal Atomic # 7 Polarization: -115.15 SS G_CDS: -12.23 Total: -127.38 kcal Atomic # 8 Polarization: -29.85 SS G_CDS: -0.09 Total: -29.95 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 1.88 Total: 45.64 kcal Total: -68.58 -4.50 -73.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331165070.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.599 kcal (2) G-P(sol) polarization free energy of solvation -68.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.99 seconds