Wall clock time and date at job start Fri Apr 10 2020 14:48:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53010 * 109.46784 * 2 1 4 4 N 1.46896 * 109.47374 * 120.00037 * 2 1 3 5 5 C 1.46956 * 111.00058 * 175.00371 * 4 2 1 6 6 C 1.53049 * 109.36630 * 183.19141 * 5 4 2 7 7 N 1.46963 * 109.36171 * 301.59816 * 6 5 4 8 8 C 1.46896 * 111.00029 * 183.18886 * 7 6 5 9 9 C 1.52996 * 109.47255 * 169.99612 * 8 7 6 10 10 C 1.50702 * 109.47159 * 179.97438 * 9 8 7 11 11 O 1.21283 * 120.00262 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99928 * 179.72352 * 10 9 8 13 13 C 1.46499 * 120.00199 * 180.27479 * 12 10 9 14 14 C 1.50694 * 109.47550 * 180.02562 * 13 12 10 15 15 O 1.21297 * 119.99707 * 0.02562 * 14 13 12 16 16 N 1.34776 * 120.00262 * 180.02562 * 14 13 12 17 17 C 1.37096 * 119.99935 * 180.02562 * 16 14 13 18 18 H 1.07998 * 120.00186 * 0.02562 * 17 16 14 19 19 C 1.38957 * 119.99926 * 179.97438 * 17 16 14 20 20 N 1.31403 * 119.99982 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00036 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47041 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.46896 * 120.00177 * 21 19 17 24 24 H 1.48502 * 109.47328 * 240.00601 * 21 19 17 25 25 C 1.46948 * 110.88098 * 59.31807 * 7 6 5 26 26 C 1.46961 * 111.00056 * 298.79972 * 4 2 1 27 27 H 1.08994 * 109.47329 * 59.99760 * 1 2 3 28 28 H 1.08998 * 109.46340 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46646 * 299.99786 * 1 2 3 30 30 H 1.08999 * 109.47111 * 240.00453 * 2 1 3 31 31 H 1.09005 * 109.46579 * 180.02562 * 3 2 1 32 32 H 1.08994 * 109.47384 * 300.00207 * 3 2 1 33 33 H 1.08999 * 109.46927 * 60.00340 * 3 2 1 34 34 H 1.08999 * 109.49195 * 63.22174 * 5 4 2 35 35 H 1.09002 * 109.48564 * 303.15617 * 5 4 2 36 36 H 1.09001 * 109.49268 * 181.63068 * 6 5 4 37 37 H 1.09000 * 109.49067 * 61.56021 * 6 5 4 38 38 H 1.09004 * 109.47112 * 49.99605 * 8 7 6 39 39 H 1.09000 * 109.47386 * 289.99993 * 8 7 6 40 40 H 1.09004 * 109.47066 * 59.99965 * 9 8 7 41 41 H 1.08994 * 109.47405 * 299.99795 * 9 8 7 42 42 H 0.97000 * 120.00317 * 0.28382 * 12 10 9 43 43 H 1.08998 * 109.47134 * 300.00670 * 13 12 10 44 44 H 1.09002 * 109.46857 * 59.99862 * 13 12 10 45 45 H 0.96996 * 120.00282 * 0.02562 * 16 14 13 46 46 H 0.97003 * 120.00258 * 180.02562 * 20 19 17 47 47 H 1.08999 * 109.48998 * 60.64771 * 25 7 6 48 48 H 1.09003 * 109.49079 * 180.70973 * 25 7 6 49 49 H 1.09000 * 109.48854 * 296.77870 * 26 4 2 50 50 H 1.09001 * 109.48531 * 56.84334 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 3.4839 -0.8164 1.1751 6 6 3.9464 -1.6110 2.3986 7 7 3.4987 -0.9283 3.6206 8 6 3.9884 -1.6207 4.8200 9 6 3.7202 -0.7561 6.0534 10 6 4.2220 -1.4668 7.2839 11 8 4.7434 -2.5573 7.1842 12 7 4.0970 -0.8879 8.4946 13 6 4.5902 -1.5761 9.6901 14 6 4.3304 -0.7224 10.9044 15 8 3.7863 0.3549 10.7832 16 7 4.7027 -1.1557 12.1251 17 6 4.4658 -0.3792 13.2298 18 1 3.9806 0.5796 13.1220 19 6 4.8492 -0.8262 14.4884 20 7 5.4392 -1.9930 14.6197 21 14 4.5258 0.2315 15.9938 22 1 3.8536 1.4893 15.5799 23 1 3.6521 -0.5080 16.9399 24 1 5.8141 0.5538 16.6584 25 6 2.0347 -0.8043 3.6450 26 6 1.5722 -0.0097 2.4214 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3632 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 3.1300 1.4426 -0.0005 32 1 1.6766 1.9565 -0.8899 33 1 1.6766 1.9564 0.8900 34 1 3.9333 0.1764 1.1951 35 1 3.7897 -1.3361 0.2671 36 1 5.0342 -1.6794 2.3980 37 1 3.5186 -2.6130 2.3645 38 1 5.0600 -1.7969 4.7258 39 1 3.4714 -2.5745 4.9255 40 1 2.6486 -0.5800 6.1476 41 1 4.2372 0.1976 5.9480 42 1 3.6803 -0.0156 8.5744 43 1 4.0737 -2.5297 9.7995 44 1 5.6614 -1.7524 9.5918 45 1 5.1382 -2.0170 12.2220 46 1 5.7064 -2.3053 15.4983 47 1 1.5852 -1.7971 3.6249 48 1 1.7287 -0.2846 4.5530 49 1 1.9999 0.9923 2.4555 50 1 0.4843 0.0587 2.4220 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350731339.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:48:26 Heat of formation + Delta-G solvation = -68.790567 kcal Electronic energy + Delta-G solvation = -27375.605669 eV Core-core repulsion = 23437.490798 eV Total energy + Delta-G solvation = -3938.114871 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.211 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.13143 -39.50576 -38.16789 -36.92439 -34.46379 -33.66901 -32.96779 -31.40515 -31.24670 -30.54304 -27.81250 -27.63843 -26.07509 -24.49472 -24.08341 -22.45967 -21.14340 -20.03490 -19.53038 -19.47388 -18.11755 -17.38977 -16.56780 -15.98806 -15.72814 -15.56583 -15.33217 -15.18755 -15.04704 -14.78025 -14.49763 -14.41642 -14.27493 -14.00397 -13.82157 -13.30179 -13.15802 -13.09768 -12.53395 -12.36344 -12.22643 -12.18272 -11.99629 -11.87088 -11.72056 -11.65049 -11.59058 -11.29876 -11.15455 -11.12450 -10.85879 -10.74889 -10.41963 -10.33802 -9.71748 -9.66132 -8.80586 -8.70774 -8.64752 -8.50670 -8.11604 -6.52866 -3.94899 2.82478 3.09381 3.19538 3.23020 3.29594 3.51232 3.72628 3.80043 4.11177 4.41970 4.51392 4.67765 4.69921 4.86762 4.86841 4.88343 4.93869 4.97474 5.05881 5.14232 5.14775 5.16016 5.21957 5.23417 5.32711 5.42789 5.46401 5.49027 5.56221 5.62221 5.66296 5.72048 5.79255 5.83466 5.86655 5.91545 5.92553 5.95871 6.06198 6.65374 6.66797 6.67819 6.85207 6.86732 7.44938 7.80168 7.90967 8.41988 8.46107 9.03340 9.37954 9.85721 10.64052 Molecular weight = 326.21amu Principal moments of inertia in cm(-1) A = 0.032143 B = 0.001675 C = 0.001622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.885355 B =16708.919082 C =17257.796861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.076 3.924 3 C -0.188 4.188 4 N -0.535 5.535 5 C 0.056 3.944 6 C 0.058 3.942 7 N -0.541 5.541 8 C 0.074 3.926 9 C -0.135 4.135 10 C 0.512 3.488 11 O -0.553 6.553 12 N -0.708 5.708 13 C 0.108 3.892 14 C 0.428 3.572 15 O -0.598 6.598 16 N -0.549 5.549 17 C -0.305 4.305 18 H 0.106 0.894 19 C 0.025 3.975 20 N -0.894 5.894 21 Si 0.933 3.067 22 H -0.267 1.267 23 H -0.280 1.280 24 H -0.280 1.280 25 C 0.051 3.949 26 C 0.052 3.948 27 H 0.058 0.942 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.081 0.919 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.046 0.954 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.043 0.957 38 H 0.083 0.917 39 H 0.044 0.956 40 H 0.092 0.908 41 H 0.102 0.898 42 H 0.411 0.589 43 H 0.083 0.917 44 H 0.083 0.917 45 H 0.396 0.604 46 H 0.274 0.726 47 H 0.043 0.957 48 H 0.082 0.918 49 H 0.047 0.953 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.091 2.239 -27.878 28.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.032 4.032 3 C -0.246 4.246 4 N -0.259 5.259 5 C -0.072 4.072 6 C -0.070 4.070 7 N -0.266 5.266 8 C -0.054 4.054 9 C -0.176 4.176 10 C 0.298 3.702 11 O -0.432 6.432 12 N -0.361 5.361 13 C -0.019 4.019 14 C 0.213 3.787 15 O -0.484 6.484 16 N -0.184 5.184 17 C -0.435 4.435 18 H 0.124 0.876 19 C -0.177 4.177 20 N -0.534 5.534 21 Si 0.759 3.241 22 H -0.191 1.191 23 H -0.206 1.206 24 H -0.206 1.206 25 C -0.077 4.077 26 C -0.076 4.076 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.099 0.901 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.064 0.936 35 H 0.095 0.905 36 H 0.099 0.901 37 H 0.061 0.939 38 H 0.102 0.898 39 H 0.063 0.937 40 H 0.110 0.890 41 H 0.120 0.880 42 H 0.249 0.751 43 H 0.101 0.899 44 H 0.101 0.899 45 H 0.230 0.770 46 H 0.084 0.916 47 H 0.061 0.939 48 H 0.101 0.899 49 H 0.065 0.935 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -6.006 2.070 -27.813 28.529 hybrid contribution 0.004 0.344 1.024 1.080 sum -6.002 2.414 -26.789 27.559 Atomic orbital electron populations 1.21871 0.94265 1.02449 1.01739 1.21687 0.95817 0.92484 0.93255 1.22484 1.01621 0.98070 1.02456 1.62419 1.10819 1.50727 1.01958 1.22170 0.87524 0.99681 0.97860 1.22129 1.00181 0.95903 0.88776 1.62127 1.10777 1.51621 1.02105 1.21765 1.01439 0.94642 0.87597 1.21590 1.03183 1.00808 0.92000 1.20543 0.79108 0.86001 0.84574 1.90688 1.44625 1.21149 1.86726 1.45739 1.61268 1.23538 1.05601 1.20945 1.00467 0.95871 0.84648 1.19758 0.85987 0.88380 0.84534 1.90497 1.48653 1.23741 1.85537 1.41807 1.51581 1.20040 1.04966 1.19787 1.37168 1.02594 0.83919 0.87607 1.25332 0.96437 0.96585 0.99380 1.69619 1.39695 1.18807 1.25316 0.85753 0.78136 0.79715 0.80452 1.19134 1.20613 1.20601 1.22250 0.87665 0.99763 0.98035 1.22243 1.00234 0.96251 0.88899 0.92288 0.91857 0.92444 0.90106 0.92403 0.92153 0.92134 0.93586 0.90481 0.90150 0.93894 0.89841 0.93745 0.88968 0.88011 0.75082 0.89924 0.89881 0.77039 0.91628 0.93897 0.89949 0.93496 0.90080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.00 37.16 0.33 -0.50 16 2 C 0.08 0.49 2.96 -67.71 -0.20 0.29 16 3 C -0.19 -1.13 8.49 37.16 0.32 -0.81 16 4 N -0.53 -4.19 4.70 -226.48 -1.06 -5.25 16 5 C 0.06 0.43 5.25 -3.77 -0.02 0.41 16 6 C 0.06 0.50 5.61 -3.76 -0.02 0.48 16 7 N -0.54 -5.18 4.71 -234.47 -1.10 -6.28 16 8 C 0.07 0.80 4.25 -3.83 -0.02 0.79 16 9 C -0.14 -1.49 5.63 -27.88 -0.16 -1.65 16 10 C 0.51 7.73 7.83 -10.98 -0.09 7.64 16 11 O -0.55 -10.08 15.98 5.55 0.09 -9.99 16 12 N -0.71 -11.51 5.53 -61.47 -0.34 -11.85 16 13 C 0.11 1.99 6.15 -5.20 -0.03 1.96 16 14 C 0.43 9.77 7.85 -10.99 -0.09 9.69 16 15 O -0.60 -15.21 15.24 5.54 0.08 -15.13 16 16 N -0.55 -13.60 5.29 -10.96 -0.06 -13.66 16 17 C -0.31 -8.28 9.68 -14.93 -0.14 -8.43 16 18 H 0.11 2.99 7.16 -52.49 -0.38 2.62 16 19 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 20 N -0.89 -23.83 13.05 55.50 0.72 -23.11 16 21 Si 0.93 20.47 29.55 -169.99 -5.02 15.45 16 22 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 23 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 24 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 25 C 0.05 0.45 5.41 -3.77 -0.02 0.43 16 26 C 0.05 0.41 4.81 -3.77 -0.02 0.39 16 27 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.33 6.36 -51.93 -0.33 0.00 16 30 H 0.08 0.50 8.11 -51.93 -0.42 0.08 16 31 H 0.06 0.37 6.59 -51.93 -0.34 0.03 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.40 6.46 -51.93 -0.34 0.06 16 34 H 0.05 0.37 6.60 -51.93 -0.34 0.03 16 35 H 0.08 0.51 8.12 -51.93 -0.42 0.09 16 36 H 0.08 0.64 8.07 -51.93 -0.42 0.22 16 37 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.08 0.97 7.98 -51.93 -0.41 0.56 16 39 H 0.04 0.54 8.08 -51.93 -0.42 0.12 16 40 H 0.09 0.88 6.49 -51.93 -0.34 0.55 16 41 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 42 H 0.41 6.53 7.44 -40.82 -0.30 6.23 16 43 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 44 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 45 H 0.40 9.43 7.90 -40.82 -0.32 9.11 16 46 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 47 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 48 H 0.08 0.68 6.34 -51.93 -0.33 0.35 16 49 H 0.05 0.39 6.46 -51.93 -0.34 0.06 16 50 H 0.08 0.58 6.17 -51.93 -0.32 0.26 16 LS Contribution 391.58 15.07 5.90 5.90 Total: -1.00 -30.85 391.58 -9.33 -40.17 By element: Atomic # 1 Polarization: 20.79 SS G_CDS: -8.29 Total: 12.50 kcal Atomic # 6 Polarization: 11.49 SS G_CDS: -0.25 Total: 11.24 kcal Atomic # 7 Polarization: -58.31 SS G_CDS: -1.84 Total: -60.15 kcal Atomic # 8 Polarization: -25.29 SS G_CDS: 0.17 Total: -25.12 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -30.85 -9.33 -40.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350731339.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.618 kcal (2) G-P(sol) polarization free energy of solvation -30.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds