Wall clock time and date at job start Fri Apr 10 2020 14:48:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53010 * 109.46784 * 2 1 4 4 N 1.46896 * 109.47374 * 120.00037 * 2 1 3 5 5 C 1.46956 * 111.00058 * 175.00371 * 4 2 1 6 6 C 1.53049 * 109.36630 * 183.19141 * 5 4 2 7 7 N 1.46963 * 109.36171 * 301.59816 * 6 5 4 8 8 C 1.46896 * 111.00029 * 183.18886 * 7 6 5 9 9 C 1.52996 * 109.47255 * 169.99612 * 8 7 6 10 10 C 1.50702 * 109.47159 * 179.97438 * 9 8 7 11 11 O 1.21283 * 120.00262 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99928 * 179.72352 * 10 9 8 13 13 C 1.46499 * 120.00199 * 180.27479 * 12 10 9 14 14 C 1.50694 * 109.47550 * 180.02562 * 13 12 10 15 15 O 1.21297 * 119.99707 * 0.02562 * 14 13 12 16 16 N 1.34776 * 120.00262 * 180.02562 * 14 13 12 17 17 C 1.37096 * 119.99935 * 180.02562 * 16 14 13 18 18 H 1.07998 * 120.00186 * 0.02562 * 17 16 14 19 19 C 1.38957 * 119.99926 * 179.97438 * 17 16 14 20 20 N 1.31403 * 119.99982 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00036 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47041 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.46896 * 120.00177 * 21 19 17 24 24 H 1.48502 * 109.47328 * 240.00601 * 21 19 17 25 25 C 1.46948 * 110.88098 * 59.31807 * 7 6 5 26 26 C 1.46961 * 111.00056 * 298.79972 * 4 2 1 27 27 H 1.08994 * 109.47329 * 59.99760 * 1 2 3 28 28 H 1.08998 * 109.46340 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46646 * 299.99786 * 1 2 3 30 30 H 1.08999 * 109.47111 * 240.00453 * 2 1 3 31 31 H 1.09005 * 109.46579 * 180.02562 * 3 2 1 32 32 H 1.08994 * 109.47384 * 300.00207 * 3 2 1 33 33 H 1.08999 * 109.46927 * 60.00340 * 3 2 1 34 34 H 1.08999 * 109.49195 * 63.22174 * 5 4 2 35 35 H 1.09002 * 109.48564 * 303.15617 * 5 4 2 36 36 H 1.09001 * 109.49268 * 181.63068 * 6 5 4 37 37 H 1.09000 * 109.49067 * 61.56021 * 6 5 4 38 38 H 1.09004 * 109.47112 * 49.99605 * 8 7 6 39 39 H 1.09000 * 109.47386 * 289.99993 * 8 7 6 40 40 H 1.09004 * 109.47066 * 59.99965 * 9 8 7 41 41 H 1.08994 * 109.47405 * 299.99795 * 9 8 7 42 42 H 0.97000 * 120.00317 * 0.28382 * 12 10 9 43 43 H 1.08998 * 109.47134 * 300.00670 * 13 12 10 44 44 H 1.09002 * 109.46857 * 59.99862 * 13 12 10 45 45 H 0.96996 * 120.00282 * 0.02562 * 16 14 13 46 46 H 0.97003 * 120.00258 * 180.02562 * 20 19 17 47 47 H 1.08999 * 109.48998 * 60.64771 * 25 7 6 48 48 H 1.09003 * 109.49079 * 180.70973 * 25 7 6 49 49 H 1.09000 * 109.48854 * 296.77870 * 26 4 2 50 50 H 1.09001 * 109.48531 * 56.84334 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 3.4839 -0.8164 1.1751 6 6 3.9464 -1.6110 2.3986 7 7 3.4987 -0.9283 3.6206 8 6 3.9884 -1.6207 4.8200 9 6 3.7202 -0.7561 6.0534 10 6 4.2220 -1.4668 7.2839 11 8 4.7434 -2.5573 7.1842 12 7 4.0970 -0.8879 8.4946 13 6 4.5902 -1.5761 9.6901 14 6 4.3304 -0.7224 10.9044 15 8 3.7863 0.3549 10.7832 16 7 4.7027 -1.1557 12.1251 17 6 4.4658 -0.3792 13.2298 18 1 3.9806 0.5796 13.1220 19 6 4.8492 -0.8262 14.4884 20 7 5.4392 -1.9930 14.6197 21 14 4.5258 0.2315 15.9938 22 1 3.8536 1.4893 15.5799 23 1 3.6521 -0.5080 16.9399 24 1 5.8141 0.5538 16.6584 25 6 2.0347 -0.8043 3.6450 26 6 1.5722 -0.0097 2.4214 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3632 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 3.1300 1.4426 -0.0005 32 1 1.6766 1.9565 -0.8899 33 1 1.6766 1.9564 0.8900 34 1 3.9333 0.1764 1.1951 35 1 3.7897 -1.3361 0.2671 36 1 5.0342 -1.6794 2.3980 37 1 3.5186 -2.6130 2.3645 38 1 5.0600 -1.7969 4.7258 39 1 3.4714 -2.5745 4.9255 40 1 2.6486 -0.5800 6.1476 41 1 4.2372 0.1976 5.9480 42 1 3.6803 -0.0156 8.5744 43 1 4.0737 -2.5297 9.7995 44 1 5.6614 -1.7524 9.5918 45 1 5.1382 -2.0170 12.2220 46 1 5.7064 -2.3053 15.4983 47 1 1.5852 -1.7971 3.6249 48 1 1.7287 -0.2846 4.5530 49 1 1.9999 0.9923 2.4555 50 1 0.4843 0.0587 2.4220 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350731339.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:48:25 Heat of formation + Delta-G solvation = -92.966333 kcal Electronic energy + Delta-G solvation = -27376.654009 eV Core-core repulsion = 23437.490798 eV Total energy + Delta-G solvation = -3939.163211 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.211 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.13005 -40.56690 -39.87233 -37.65509 -36.25275 -35.27672 -33.71410 -33.37246 -31.89775 -31.40136 -29.24845 -28.10490 -27.08886 -26.16340 -24.75180 -23.39777 -21.77971 -21.39088 -21.18075 -20.09455 -20.05899 -18.62781 -17.47865 -17.21677 -17.06996 -16.89185 -16.36372 -16.32879 -15.99830 -15.85187 -15.69640 -15.60918 -15.29974 -15.08701 -14.80191 -14.39919 -14.23854 -13.90921 -13.81051 -13.55855 -13.47914 -13.18704 -12.96048 -12.91688 -12.78651 -12.61233 -12.45181 -12.36956 -12.21911 -12.11355 -11.96230 -11.77880 -11.58475 -11.49950 -11.38082 -11.00640 -10.56530 -10.19766 -10.08446 -9.42070 -9.16796 -8.51787 -6.02043 1.34815 1.42893 1.56872 1.60383 1.90435 2.00126 2.31021 2.90541 2.96064 3.14434 3.15435 3.78283 3.86451 3.90856 3.98011 4.10373 4.18384 4.24067 4.25182 4.35188 4.39595 4.42596 4.42988 4.48019 4.50693 4.52105 4.63735 4.77031 4.81834 4.85393 4.89846 4.94274 4.96316 4.99893 5.04134 5.05892 5.17288 5.29371 5.34029 5.38352 5.41209 5.91313 5.94862 6.00634 6.18805 6.23194 6.45413 6.54504 7.02955 7.18047 7.43848 7.93685 8.65297 Molecular weight = 326.21amu Principal moments of inertia in cm(-1) A = 0.032143 B = 0.001675 C = 0.001622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.885355 B =16708.919082 C =17257.796861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.075 3.925 3 C -0.182 4.182 4 N -0.545 5.545 5 C 0.060 3.940 6 C 0.057 3.943 7 N -0.540 5.540 8 C 0.081 3.919 9 C -0.123 4.123 10 C 0.514 3.486 11 O -0.584 6.584 12 N -0.708 5.708 13 C 0.121 3.879 14 C 0.433 3.567 15 O -0.624 6.624 16 N -0.560 5.560 17 C -0.338 4.338 18 H 0.087 0.913 19 C -0.011 4.011 20 N -0.916 5.916 21 Si 0.998 3.002 22 H -0.270 1.270 23 H -0.271 1.271 24 H -0.271 1.271 25 C 0.050 3.950 26 C 0.056 3.944 27 H 0.070 0.930 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.084 0.916 31 H 0.052 0.948 32 H 0.069 0.931 33 H 0.054 0.946 34 H 0.043 0.957 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.033 0.967 38 H 0.075 0.925 39 H 0.029 0.971 40 H 0.112 0.888 41 H 0.118 0.882 42 H 0.415 0.585 43 H 0.092 0.908 44 H 0.093 0.907 45 H 0.398 0.602 46 H 0.280 0.720 47 H 0.032 0.968 48 H 0.090 0.910 49 H 0.044 0.956 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.534 2.962 -28.712 29.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.033 4.033 3 C -0.241 4.241 4 N -0.270 5.270 5 C -0.068 4.068 6 C -0.071 4.071 7 N -0.265 5.265 8 C -0.048 4.048 9 C -0.163 4.163 10 C 0.302 3.698 11 O -0.465 6.465 12 N -0.362 5.362 13 C -0.007 4.007 14 C 0.220 3.780 15 O -0.512 6.512 16 N -0.195 5.195 17 C -0.467 4.467 18 H 0.105 0.895 19 C -0.211 4.211 20 N -0.556 5.556 21 Si 0.821 3.179 22 H -0.194 1.194 23 H -0.197 1.197 24 H -0.196 1.196 25 C -0.078 4.078 26 C -0.072 4.072 27 H 0.089 0.911 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.102 0.898 31 H 0.071 0.929 32 H 0.088 0.912 33 H 0.073 0.927 34 H 0.061 0.939 35 H 0.106 0.894 36 H 0.104 0.896 37 H 0.051 0.949 38 H 0.093 0.907 39 H 0.048 0.952 40 H 0.130 0.870 41 H 0.136 0.864 42 H 0.253 0.747 43 H 0.110 0.890 44 H 0.111 0.889 45 H 0.233 0.767 46 H 0.089 0.911 47 H 0.051 0.949 48 H 0.108 0.892 49 H 0.062 0.938 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.450 2.788 -28.675 29.523 hybrid contribution 0.133 0.095 1.196 1.207 sum -6.317 2.883 -27.479 28.343 Atomic orbital electron populations 1.21844 0.93725 1.02160 1.02253 1.21740 0.96226 0.92612 0.92717 1.22423 1.01236 0.97773 1.02628 1.62439 1.10870 1.51198 1.02457 1.22135 0.87537 0.99406 0.97706 1.22180 1.00510 0.95539 0.88874 1.62160 1.11302 1.51236 1.01840 1.21630 1.00780 0.94108 0.88251 1.21561 1.04331 1.00727 0.89702 1.21189 0.78061 0.85550 0.84961 1.90679 1.46041 1.22697 1.87093 1.45772 1.61467 1.23641 1.05363 1.20756 1.01279 0.95272 0.83438 1.20446 0.84242 0.88197 0.85152 1.90473 1.49414 1.25119 1.86160 1.41860 1.52306 1.20112 1.05267 1.19787 1.38782 1.02694 0.85423 0.89531 1.26135 0.95695 0.97712 1.01602 1.69683 1.39849 1.19775 1.26311 0.84801 0.78296 0.77927 0.76887 1.19412 1.19659 1.19648 1.22307 0.87058 0.99467 0.99006 1.22198 1.00653 0.95765 0.88557 0.91139 0.92512 0.92577 0.89759 0.92889 0.91201 0.92702 0.93866 0.89401 0.89640 0.94860 0.90699 0.95241 0.87020 0.86393 0.74688 0.88995 0.88944 0.76739 0.91076 0.94943 0.89175 0.93798 0.89302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 9.00 71.98 0.65 -0.76 16 2 C 0.08 0.85 2.96 44.92 0.13 0.98 16 3 C -0.18 -1.91 8.49 71.99 0.61 -1.30 16 4 N -0.54 -7.85 4.70 -870.45 -4.09 -11.94 16 5 C 0.06 0.85 5.25 86.31 0.45 1.30 16 6 C 0.06 0.94 5.61 86.31 0.48 1.42 16 7 N -0.54 -9.73 4.71 -895.74 -4.22 -13.95 16 8 C 0.08 1.69 4.25 86.30 0.37 2.06 16 9 C -0.12 -2.51 5.63 29.85 0.17 -2.34 16 10 C 0.51 14.94 7.83 87.66 0.69 15.63 16 11 O -0.58 -20.92 15.98 -3.04 -0.05 -20.97 16 12 N -0.71 -22.29 5.53 -466.79 -2.58 -24.87 16 13 C 0.12 4.35 6.15 85.63 0.53 4.87 16 14 C 0.43 19.80 7.85 87.66 0.69 20.49 16 15 O -0.62 -31.88 15.24 -3.08 -0.05 -31.92 16 16 N -0.56 -28.04 5.29 -306.98 -1.62 -29.66 16 17 C -0.34 -18.55 9.68 84.04 0.81 -17.74 16 18 H 0.09 5.01 7.16 -2.91 -0.02 4.99 16 19 C -0.01 -0.56 5.50 84.93 0.47 -0.09 16 20 N -0.92 -48.56 13.05 21.66 0.28 -48.28 16 21 Si 1.00 41.60 29.55 68.60 2.03 43.63 16 22 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 23 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 24 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 25 C 0.05 0.81 5.41 86.31 0.47 1.28 16 26 C 0.06 0.81 4.81 86.31 0.42 1.22 16 27 H 0.07 0.53 8.14 -2.39 -0.02 0.52 16 28 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.06 0.57 6.36 -2.39 -0.02 0.55 16 30 H 0.08 0.90 8.11 -2.39 -0.02 0.88 16 31 H 0.05 0.61 6.59 -2.38 -0.02 0.59 16 32 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.05 0.64 6.46 -2.39 -0.02 0.63 16 34 H 0.04 0.64 6.60 -2.39 -0.02 0.63 16 35 H 0.09 1.04 8.12 -2.39 -0.02 1.02 16 36 H 0.09 1.30 8.07 -2.39 -0.02 1.28 16 37 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.07 1.70 7.98 -2.38 -0.02 1.68 16 39 H 0.03 0.70 8.08 -2.39 -0.02 0.68 16 40 H 0.11 1.89 6.49 -2.38 -0.02 1.87 16 41 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16 42 H 0.41 12.71 7.44 -92.71 -0.69 12.02 16 43 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 44 H 0.09 3.20 8.14 -2.39 -0.02 3.18 16 45 H 0.40 19.20 7.90 -92.71 -0.73 18.47 16 46 H 0.28 13.83 8.31 -92.71 -0.77 13.06 16 47 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 48 H 0.09 1.31 6.34 -2.39 -0.02 1.30 16 49 H 0.04 0.67 6.46 -2.39 -0.02 0.65 16 50 H 0.09 1.13 6.17 -2.39 -0.01 1.12 16 Total: -1.00 -65.26 391.58 -3.84 -69.09 By element: Atomic # 1 Polarization: 42.31 SS G_CDS: -0.47 Total: 41.84 kcal Atomic # 6 Polarization: 20.10 SS G_CDS: 6.93 Total: 27.03 kcal Atomic # 7 Polarization: -116.47 SS G_CDS: -12.23 Total: -128.70 kcal Atomic # 8 Polarization: -52.80 SS G_CDS: -0.10 Total: -52.89 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.63 kcal Total: -65.26 -3.84 -69.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350731339.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.872 kcal (2) G-P(sol) polarization free energy of solvation -65.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds