Wall clock time and date at job start Fri Apr 10 2020 14:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.46676 * 2 1 4 4 H 1.09004 * 109.46714 * 305.84129 * 3 2 1 5 5 C 1.50698 * 109.47218 * 65.84280 * 3 2 1 6 6 O 1.21281 * 120.00135 * 102.36206 * 5 3 2 7 7 N 1.34773 * 119.99847 * 282.35844 * 5 3 2 8 8 C 1.46509 * 119.99878 * 185.20558 * 7 5 3 9 9 C 1.53001 * 109.47063 * 180.02562 * 8 7 5 10 10 H 1.08998 * 112.78646 * 284.19491 * 9 8 7 11 11 C 1.53507 * 113.47522 * 153.37933 * 9 8 7 12 12 C 1.53508 * 83.57874 * 219.20861 * 11 9 8 13 13 N 1.47483 * 113.47669 * 54.99810 * 9 8 7 14 14 C 1.46896 * 111.00227 * 253.46982 * 13 9 8 15 15 C 1.50693 * 109.47122 * 197.59170 * 14 13 9 16 16 O 1.21292 * 120.00463 * 353.95480 * 15 14 13 17 17 N 1.34776 * 119.99906 * 173.95685 * 15 14 13 18 18 C 1.37103 * 120.00126 * 180.02562 * 17 15 14 19 19 H 1.08004 * 119.99873 * 359.97438 * 18 17 15 20 20 C 1.38950 * 120.00189 * 179.97438 * 18 17 15 21 21 N 1.31412 * 119.99848 * 359.72504 * 20 18 17 22 22 Si 1.86804 * 119.99945 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46965 * 90.00117 * 22 20 18 24 24 H 1.48497 * 109.46817 * 210.00172 * 22 20 18 25 25 H 1.48501 * 109.47174 * 330.00144 * 22 20 18 26 26 N 1.46898 * 109.46966 * 185.84346 * 3 2 1 27 27 C 1.46903 * 111.00238 * 313.91958 * 26 3 2 28 28 C 1.46904 * 110.99923 * 77.87404 * 26 3 2 29 29 H 1.09002 * 109.46708 * 179.33501 * 1 2 3 30 30 H 1.09003 * 109.47018 * 299.32980 * 1 2 3 31 31 H 1.08996 * 109.47751 * 59.33587 * 1 2 3 32 32 H 1.09001 * 109.46890 * 240.00302 * 2 1 3 33 33 H 1.08999 * 109.47477 * 119.99858 * 2 1 3 34 34 H 0.96999 * 120.00292 * 5.21036 * 7 5 3 35 35 H 1.08991 * 109.47122 * 59.99946 * 8 7 5 36 36 H 1.08998 * 109.46664 * 299.99907 * 8 7 5 37 37 H 1.09002 * 114.17265 * 105.55918 * 11 9 8 38 38 H 1.09006 * 114.34727 * 332.86697 * 11 9 8 39 39 H 1.08995 * 113.47912 * 271.26038 * 12 11 9 40 40 H 1.08998 * 113.53559 * 140.79364 * 12 11 9 41 41 H 1.08997 * 109.47358 * 77.58826 * 14 13 9 42 42 H 1.09003 * 109.47313 * 317.59371 * 14 13 9 43 43 H 0.97003 * 120.00326 * 359.97438 * 17 15 14 44 44 H 0.97005 * 119.99701 * 179.97438 * 21 20 18 45 45 H 1.08999 * 109.46995 * 59.99680 * 27 26 3 46 46 H 1.08994 * 109.47368 * 179.97438 * 27 26 3 47 47 H 1.09003 * 109.46554 * 300.00356 * 27 26 3 48 48 H 1.08996 * 109.47453 * 64.28594 * 28 26 3 49 49 H 1.09003 * 109.47254 * 184.29036 * 28 26 3 50 50 H 1.09003 * 109.46985 * 304.28473 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5936 1.9856 -0.8331 5 6 1.6592 2.1100 1.2964 6 8 2.4881 2.2562 2.1695 7 7 0.3974 2.5444 1.4854 8 6 0.0545 3.2939 2.6967 9 6 -1.4294 3.6651 2.6637 10 1 -1.6435 4.4887 1.9827 11 6 -2.0450 3.8485 4.0580 12 6 -3.2545 3.1441 3.4276 13 7 -2.3214 2.5048 2.4812 14 6 -2.8825 2.4806 1.1238 15 6 -4.0866 1.5749 1.0942 16 8 -4.3779 0.9210 2.0733 17 7 -4.8398 1.4915 -0.0204 18 6 -5.9355 0.6679 -0.0472 19 1 -6.1949 0.0856 0.8246 20 6 -6.7123 0.5823 -1.1961 21 7 -6.3999 1.2949 -2.2551 22 14 -8.2049 -0.5404 -1.2329 23 1 -9.4018 0.2124 -0.7790 24 1 -8.4230 -1.0285 -2.6183 25 1 -7.9763 -1.6975 -0.3306 26 7 3.5021 1.4451 -0.1410 27 6 4.1195 0.4617 0.7589 28 6 3.8970 1.2035 -1.5352 29 1 -0.3633 -1.0276 -0.0119 30 1 -0.3633 0.5034 0.8960 31 1 -0.3634 0.5241 -0.8839 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 -0.2836 2.3608 0.8196 35 1 0.6556 4.2018 2.7445 36 1 0.2554 2.6786 3.5736 37 1 -2.2267 4.8876 4.3324 38 1 -1.5546 3.2751 4.8447 39 1 -3.9556 3.8287 2.9505 40 1 -3.7448 2.4380 4.0977 41 1 -2.1314 2.1094 0.4266 42 1 -3.1792 3.4890 0.8352 43 1 -4.6071 2.0147 -0.8034 44 1 -6.9420 1.2348 -3.0573 45 1 3.7470 -0.5342 0.5193 46 1 5.2020 0.4841 0.6338 47 1 3.8675 0.7053 1.7910 48 1 3.5480 2.0261 -2.1594 49 1 4.9830 1.1346 -1.5986 50 1 3.4529 0.2704 -1.8821 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001670712990.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:47:07 Heat of formation + Delta-G solvation = -21.469938 kcal Electronic energy + Delta-G solvation = -29291.988483 eV Core-core repulsion = 25355.925588 eV Total energy + Delta-G solvation = -3936.062895 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.211 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.67833 -39.92034 -37.83880 -37.25781 -34.68819 -33.98487 -32.95228 -31.44068 -30.67750 -28.79009 -27.74582 -27.20761 -25.86494 -23.80458 -23.42486 -23.29929 -21.52519 -20.17328 -19.53128 -19.29221 -17.97336 -17.37453 -16.52737 -16.18240 -15.83238 -15.47027 -15.23067 -15.13976 -14.76516 -14.58213 -14.39966 -14.16367 -13.92068 -13.81868 -13.68521 -13.14005 -12.86065 -12.61277 -12.53005 -12.32318 -11.97575 -11.96031 -11.79831 -11.76075 -11.60528 -11.54627 -11.40034 -11.31529 -11.12175 -11.03442 -10.82003 -10.49533 -10.43923 -10.27931 -9.65001 -9.56485 -8.97679 -8.77392 -8.40994 -8.34897 -8.03537 -6.48572 -3.89465 2.67661 3.01867 3.12704 3.22216 3.27836 3.80574 3.86470 3.97978 4.17207 4.44167 4.62570 4.64100 4.76313 4.86073 4.91160 4.99236 5.06262 5.06947 5.16766 5.26236 5.28855 5.35137 5.37486 5.40121 5.47823 5.48618 5.59548 5.63588 5.67288 5.72864 5.81416 5.86824 5.90503 5.94659 6.00162 6.06120 6.17207 6.23456 6.26664 6.44950 6.57658 6.71575 6.85014 7.15422 7.48789 7.53970 7.98323 8.28814 8.53471 9.11077 9.46001 9.97369 10.68954 Molecular weight = 326.21amu Principal moments of inertia in cm(-1) A = 0.012303 B = 0.003277 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2275.288789 B = 8543.612423 C =10254.029480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.148 4.148 3 C 0.064 3.936 4 H 0.102 0.898 5 C 0.525 3.475 6 O -0.531 6.531 7 N -0.723 5.723 8 C 0.142 3.858 9 C 0.003 3.997 10 H 0.082 0.918 11 C -0.136 4.136 12 C 0.015 3.985 13 N -0.436 5.436 14 C 0.006 3.994 15 C 0.442 3.558 16 O -0.576 6.576 17 N -0.562 5.562 18 C -0.299 4.299 19 H 0.103 0.897 20 C 0.024 3.976 21 N -0.901 5.901 22 Si 0.929 3.071 23 H -0.278 1.278 24 H -0.283 1.283 25 H -0.269 1.269 26 N -0.525 5.525 27 C 0.015 3.985 28 C 0.021 3.979 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.059 0.941 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.401 0.599 35 H 0.068 0.932 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.095 0.905 39 H 0.066 0.934 40 H 0.093 0.907 41 H 0.084 0.916 42 H 0.056 0.944 43 H 0.391 0.609 44 H 0.272 0.728 45 H 0.027 0.973 46 H 0.063 0.937 47 H 0.089 0.911 48 H 0.068 0.932 49 H 0.070 0.930 50 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.829 4.553 2.127 16.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.187 4.187 3 C -0.048 4.048 4 H 0.119 0.881 5 C 0.311 3.689 6 O -0.407 6.407 7 N -0.378 5.378 8 C 0.017 3.983 9 C -0.107 4.107 10 H 0.100 0.900 11 C -0.175 4.175 12 C -0.113 4.113 13 N -0.159 5.159 14 C -0.126 4.126 15 C 0.227 3.773 16 O -0.460 6.460 17 N -0.199 5.199 18 C -0.429 4.429 19 H 0.121 0.879 20 C -0.178 4.178 21 N -0.542 5.542 22 Si 0.756 3.244 23 H -0.204 1.204 24 H -0.209 1.209 25 H -0.194 1.194 26 N -0.248 5.248 27 C -0.133 4.133 28 C -0.127 4.127 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.238 0.762 35 H 0.086 0.914 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.113 0.887 39 H 0.084 0.916 40 H 0.112 0.888 41 H 0.102 0.898 42 H 0.074 0.926 43 H 0.224 0.776 44 H 0.082 0.918 45 H 0.046 0.954 46 H 0.082 0.918 47 H 0.108 0.892 48 H 0.087 0.913 49 H 0.089 0.911 50 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 16.556 4.016 3.434 17.378 hybrid contribution -1.666 -0.312 -1.724 2.418 sum 14.889 3.704 1.710 15.438 Atomic orbital electron populations 1.21992 0.94000 1.03566 1.02873 1.22098 0.97732 0.95822 1.03045 1.21768 0.89761 0.96527 0.96775 0.88054 1.20328 0.81825 0.78097 0.88680 1.90625 1.49696 1.56016 1.44349 1.46164 1.10651 1.57164 1.23778 1.21301 0.93086 0.95790 0.88082 1.23844 0.93860 0.94308 0.98686 0.89985 1.23201 0.97504 1.01162 0.95605 1.23543 0.94740 0.97089 0.95962 1.68896 1.09789 1.32409 1.04809 1.22568 0.97749 0.99374 0.92887 1.19595 0.85687 0.87071 0.84956 1.90542 1.72503 1.47886 1.35020 1.41870 1.25018 1.40262 1.12762 1.19690 1.02553 1.20509 1.00139 0.87928 1.25253 0.99513 0.98074 0.94975 1.69607 1.40311 1.40752 1.03538 0.85870 0.80942 0.80109 0.77477 1.20395 1.20884 1.19380 1.61873 1.05920 1.50622 1.06390 1.22620 0.98994 0.92602 0.99066 1.22463 1.01300 1.00197 0.88707 0.91623 0.91043 0.92238 0.90920 0.90853 0.76221 0.91368 0.90804 0.90557 0.88664 0.91597 0.88815 0.89815 0.92631 0.77560 0.91831 0.95417 0.91783 0.89212 0.91280 0.91109 0.95218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.96 9.07 37.16 0.34 -1.62 16 2 C -0.15 -1.57 4.27 -26.73 -0.11 -1.69 16 3 C 0.06 0.71 2.18 -68.86 -0.15 0.56 16 4 H 0.10 1.00 7.97 -51.93 -0.41 0.59 16 5 C 0.53 7.04 6.69 -10.99 -0.07 6.97 16 6 O -0.53 -8.69 14.37 5.56 0.08 -8.61 16 7 N -0.72 -8.82 4.50 -60.29 -0.27 -9.09 16 8 C 0.14 1.67 5.82 -4.04 -0.02 1.65 16 9 C 0.00 0.04 3.25 -71.44 -0.23 -0.20 16 10 H 0.08 0.86 7.64 -51.93 -0.40 0.46 16 11 C -0.14 -1.48 7.99 -26.21 -0.21 -1.69 16 12 C 0.02 0.22 6.38 -7.55 -0.05 0.18 16 13 N -0.44 -6.61 5.73 -237.96 -1.36 -7.98 16 14 C 0.01 0.10 5.09 -4.98 -0.03 0.08 16 15 C 0.44 9.86 7.47 -10.99 -0.08 9.78 16 16 O -0.58 -14.96 15.03 5.55 0.08 -14.88 16 17 N -0.56 -13.58 5.29 -10.96 -0.06 -13.64 16 18 C -0.30 -8.08 9.68 -14.93 -0.14 -8.22 16 19 H 0.10 2.93 7.16 -52.48 -0.38 2.55 16 20 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 21 N -0.90 -23.73 13.05 55.50 0.72 -23.01 16 22 Si 0.93 20.56 29.55 -169.99 -5.02 15.54 16 23 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 24 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 25 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 26 N -0.53 -5.89 4.71 -244.58 -1.15 -7.04 16 27 C 0.01 0.16 8.50 60.07 0.51 0.67 16 28 C 0.02 0.18 9.45 60.07 0.57 0.75 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.07 0.95 5.73 -51.93 -0.30 0.65 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.69 6.82 -51.93 -0.35 0.34 16 33 H 0.07 0.84 6.72 -51.93 -0.35 0.49 16 34 H 0.40 4.66 4.53 -40.82 -0.18 4.48 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.96 7.88 -51.93 -0.41 0.56 16 37 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.09 1.01 7.94 -51.93 -0.41 0.60 16 39 H 0.07 0.96 7.83 -51.93 -0.41 0.55 16 40 H 0.09 1.56 7.99 -51.93 -0.41 1.15 16 41 H 0.08 1.21 6.53 -51.93 -0.34 0.87 16 42 H 0.06 0.81 7.56 -51.93 -0.39 0.42 16 43 H 0.39 9.02 7.90 -40.82 -0.32 8.70 16 44 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 45 H 0.03 0.27 6.33 -51.93 -0.33 -0.06 16 46 H 0.06 0.61 8.07 -51.93 -0.42 0.19 16 47 H 0.09 1.18 6.03 -51.93 -0.31 0.86 16 48 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.07 0.53 8.05 -51.93 -0.42 0.12 16 50 H 0.03 0.24 6.80 -51.93 -0.35 -0.12 16 LS Contribution 389.41 15.07 5.87 5.87 Total: -1.00 -31.90 389.41 -9.05 -40.95 By element: Atomic # 1 Polarization: 22.30 SS G_CDS: -8.15 Total: 14.15 kcal Atomic # 6 Polarization: 7.53 SS G_CDS: 0.22 Total: 7.75 kcal Atomic # 7 Polarization: -58.65 SS G_CDS: -2.12 Total: -60.77 kcal Atomic # 8 Polarization: -23.65 SS G_CDS: 0.16 Total: -23.49 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -31.90 -9.05 -40.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670712990.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.477 kcal (2) G-P(sol) polarization free energy of solvation -31.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds