Wall clock time and date at job start Fri Apr 10 2020 14:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.46676 * 2 1 4 4 H 1.09004 * 109.46714 * 305.84129 * 3 2 1 5 5 C 1.50698 * 109.47218 * 65.84280 * 3 2 1 6 6 O 1.21281 * 120.00135 * 102.36206 * 5 3 2 7 7 N 1.34773 * 119.99847 * 282.35844 * 5 3 2 8 8 C 1.46509 * 119.99878 * 185.20558 * 7 5 3 9 9 C 1.53001 * 109.47063 * 180.02562 * 8 7 5 10 10 H 1.08998 * 112.78646 * 284.19491 * 9 8 7 11 11 C 1.53507 * 113.47522 * 153.37933 * 9 8 7 12 12 C 1.53508 * 83.57874 * 219.20861 * 11 9 8 13 13 N 1.47483 * 113.47669 * 54.99810 * 9 8 7 14 14 C 1.46896 * 111.00227 * 253.46982 * 13 9 8 15 15 C 1.50693 * 109.47122 * 197.59170 * 14 13 9 16 16 O 1.21292 * 120.00463 * 353.95480 * 15 14 13 17 17 N 1.34776 * 119.99906 * 173.95685 * 15 14 13 18 18 C 1.37103 * 120.00126 * 180.02562 * 17 15 14 19 19 H 1.08004 * 119.99873 * 359.97438 * 18 17 15 20 20 C 1.38950 * 120.00189 * 179.97438 * 18 17 15 21 21 N 1.31412 * 119.99848 * 359.72504 * 20 18 17 22 22 Si 1.86804 * 119.99945 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46965 * 90.00117 * 22 20 18 24 24 H 1.48497 * 109.46817 * 210.00172 * 22 20 18 25 25 H 1.48501 * 109.47174 * 330.00144 * 22 20 18 26 26 N 1.46898 * 109.46966 * 185.84346 * 3 2 1 27 27 C 1.46903 * 111.00238 * 313.91958 * 26 3 2 28 28 C 1.46904 * 110.99923 * 77.87404 * 26 3 2 29 29 H 1.09002 * 109.46708 * 179.33501 * 1 2 3 30 30 H 1.09003 * 109.47018 * 299.32980 * 1 2 3 31 31 H 1.08996 * 109.47751 * 59.33587 * 1 2 3 32 32 H 1.09001 * 109.46890 * 240.00302 * 2 1 3 33 33 H 1.08999 * 109.47477 * 119.99858 * 2 1 3 34 34 H 0.96999 * 120.00292 * 5.21036 * 7 5 3 35 35 H 1.08991 * 109.47122 * 59.99946 * 8 7 5 36 36 H 1.08998 * 109.46664 * 299.99907 * 8 7 5 37 37 H 1.09002 * 114.17265 * 105.55918 * 11 9 8 38 38 H 1.09006 * 114.34727 * 332.86697 * 11 9 8 39 39 H 1.08995 * 113.47912 * 271.26038 * 12 11 9 40 40 H 1.08998 * 113.53559 * 140.79364 * 12 11 9 41 41 H 1.08997 * 109.47358 * 77.58826 * 14 13 9 42 42 H 1.09003 * 109.47313 * 317.59371 * 14 13 9 43 43 H 0.97003 * 120.00326 * 359.97438 * 17 15 14 44 44 H 0.97005 * 119.99701 * 179.97438 * 21 20 18 45 45 H 1.08999 * 109.46995 * 59.99680 * 27 26 3 46 46 H 1.08994 * 109.47368 * 179.97438 * 27 26 3 47 47 H 1.09003 * 109.46554 * 300.00356 * 27 26 3 48 48 H 1.08996 * 109.47453 * 64.28594 * 28 26 3 49 49 H 1.09003 * 109.47254 * 184.29036 * 28 26 3 50 50 H 1.09003 * 109.46985 * 304.28473 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5936 1.9856 -0.8331 5 6 1.6592 2.1100 1.2964 6 8 2.4881 2.2562 2.1695 7 7 0.3974 2.5444 1.4854 8 6 0.0545 3.2939 2.6967 9 6 -1.4294 3.6651 2.6637 10 1 -1.6435 4.4887 1.9827 11 6 -2.0450 3.8485 4.0580 12 6 -3.2545 3.1441 3.4276 13 7 -2.3214 2.5048 2.4812 14 6 -2.8825 2.4806 1.1238 15 6 -4.0866 1.5749 1.0942 16 8 -4.3779 0.9210 2.0733 17 7 -4.8398 1.4915 -0.0204 18 6 -5.9355 0.6679 -0.0472 19 1 -6.1949 0.0856 0.8246 20 6 -6.7123 0.5823 -1.1961 21 7 -6.3999 1.2949 -2.2551 22 14 -8.2049 -0.5404 -1.2329 23 1 -9.4018 0.2124 -0.7790 24 1 -8.4230 -1.0285 -2.6183 25 1 -7.9763 -1.6975 -0.3306 26 7 3.5021 1.4451 -0.1410 27 6 4.1195 0.4617 0.7589 28 6 3.8970 1.2035 -1.5352 29 1 -0.3633 -1.0276 -0.0119 30 1 -0.3633 0.5034 0.8960 31 1 -0.3634 0.5241 -0.8839 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 -0.2836 2.3608 0.8196 35 1 0.6556 4.2018 2.7445 36 1 0.2554 2.6786 3.5736 37 1 -2.2267 4.8876 4.3324 38 1 -1.5546 3.2751 4.8447 39 1 -3.9556 3.8287 2.9505 40 1 -3.7448 2.4380 4.0977 41 1 -2.1314 2.1094 0.4266 42 1 -3.1792 3.4890 0.8352 43 1 -4.6071 2.0147 -0.8034 44 1 -6.9420 1.2348 -3.0573 45 1 3.7470 -0.5342 0.5193 46 1 5.2020 0.4841 0.6338 47 1 3.8675 0.7053 1.7910 48 1 3.5480 2.0261 -2.1594 49 1 4.9830 1.1346 -1.5986 50 1 3.4529 0.2704 -1.8821 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001670712990.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:47:05 Heat of formation + Delta-G solvation = -47.445369 kcal Electronic energy + Delta-G solvation = -29293.114862 eV Core-core repulsion = 25355.925588 eV Total energy + Delta-G solvation = -3937.189274 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.211 amu Computer time = 2.73 seconds Orbital eigenvalues (eV) -41.76773 -40.99014 -39.55734 -38.19656 -35.97969 -35.68793 -33.85624 -33.32375 -32.02015 -29.79479 -28.48935 -28.13328 -27.54110 -25.35797 -24.43012 -24.16002 -22.47786 -21.17758 -21.08525 -20.45251 -19.90278 -18.32180 -17.82066 -17.41435 -17.08523 -16.58075 -16.46711 -16.23852 -16.15956 -15.69685 -15.64317 -15.50944 -15.14886 -14.96119 -14.89084 -14.31664 -14.06771 -13.77787 -13.55693 -13.48364 -13.33743 -13.09876 -12.91815 -12.81773 -12.79798 -12.55592 -12.47337 -12.44309 -12.36381 -12.25663 -12.13940 -11.93787 -11.89431 -11.61153 -11.46649 -10.67320 -10.31027 -10.01475 -9.99219 -9.77397 -9.22695 -8.47045 -5.94972 1.36654 1.41514 1.53204 1.66253 2.02978 2.10023 2.28008 2.82738 3.07879 3.19458 3.26115 3.56938 3.70452 3.75754 3.80810 3.97982 4.08669 4.18092 4.23247 4.27527 4.32903 4.36070 4.41512 4.44519 4.48538 4.52532 4.56791 4.68280 4.71131 4.81962 4.87665 4.90901 4.96621 5.01613 5.03904 5.06949 5.12443 5.20911 5.29071 5.34296 5.41521 5.54527 5.90267 5.92192 6.08747 6.09853 6.56120 6.60214 7.13237 7.28532 7.56056 8.12128 8.70041 Molecular weight = 326.21amu Principal moments of inertia in cm(-1) A = 0.012303 B = 0.003277 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2275.288789 B = 8543.612423 C =10254.029480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.137 4.137 3 C 0.067 3.933 4 H 0.119 0.881 5 C 0.520 3.480 6 O -0.565 6.565 7 N -0.718 5.718 8 C 0.143 3.857 9 C 0.016 3.984 10 H 0.106 0.894 11 C -0.116 4.116 12 C 0.006 3.994 13 N -0.461 5.461 14 C 0.019 3.981 15 C 0.442 3.558 16 O -0.617 6.617 17 N -0.571 5.571 18 C -0.331 4.331 19 H 0.076 0.924 20 C -0.009 4.009 21 N -0.917 5.917 22 Si 0.987 3.013 23 H -0.272 1.272 24 H -0.271 1.271 25 H -0.275 1.275 26 N -0.542 5.542 27 C 0.019 3.981 28 C 0.021 3.979 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.071 0.929 32 H 0.089 0.911 33 H 0.060 0.940 34 H 0.404 0.596 35 H 0.081 0.919 36 H 0.057 0.943 37 H 0.107 0.893 38 H 0.095 0.905 39 H 0.066 0.934 40 H 0.061 0.939 41 H 0.105 0.895 42 H 0.081 0.919 43 H 0.396 0.604 44 H 0.277 0.723 45 H 0.035 0.965 46 H 0.075 0.925 47 H 0.062 0.938 48 H 0.077 0.923 49 H 0.080 0.920 50 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.541 5.658 0.797 17.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.177 4.177 3 C -0.045 4.045 4 H 0.137 0.863 5 C 0.307 3.693 6 O -0.444 6.444 7 N -0.372 5.372 8 C 0.019 3.981 9 C -0.094 4.094 10 H 0.123 0.877 11 C -0.154 4.154 12 C -0.123 4.123 13 N -0.184 5.184 14 C -0.113 4.113 15 C 0.229 3.771 16 O -0.503 6.503 17 N -0.209 5.209 18 C -0.461 4.461 19 H 0.094 0.906 20 C -0.209 4.209 21 N -0.558 5.558 22 Si 0.811 3.189 23 H -0.198 1.198 24 H -0.195 1.195 25 H -0.200 1.200 26 N -0.265 5.265 27 C -0.129 4.129 28 C -0.126 4.126 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.090 0.910 32 H 0.107 0.893 33 H 0.079 0.921 34 H 0.242 0.758 35 H 0.099 0.901 36 H 0.076 0.924 37 H 0.125 0.875 38 H 0.114 0.886 39 H 0.084 0.916 40 H 0.080 0.920 41 H 0.123 0.877 42 H 0.099 0.901 43 H 0.230 0.770 44 H 0.087 0.913 45 H 0.053 0.947 46 H 0.094 0.906 47 H 0.081 0.919 48 H 0.096 0.904 49 H 0.098 0.902 50 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 17.269 5.142 2.079 18.138 hybrid contribution -1.856 -0.657 -1.255 2.335 sum 15.413 4.485 0.825 16.073 Atomic orbital electron populations 1.21957 0.94846 1.02881 1.02522 1.22001 0.96744 0.95710 1.03197 1.21774 0.90189 0.96519 0.95999 0.86302 1.20800 0.81685 0.77702 0.89137 1.90613 1.50670 1.57467 1.45623 1.46165 1.10458 1.56722 1.23828 1.21308 0.93454 0.95939 0.87413 1.23867 0.92735 0.93320 0.99473 0.87661 1.23143 0.94637 1.02434 0.95183 1.23546 0.95898 0.96822 0.96054 1.68903 1.10632 1.34832 1.04051 1.22468 0.95344 0.99006 0.94434 1.20640 0.86400 0.86572 0.83511 1.90518 1.73829 1.49592 1.36351 1.41910 1.24965 1.40392 1.13599 1.19599 1.04547 1.21959 0.99965 0.90588 1.25941 1.01560 0.99071 0.94336 1.69656 1.41115 1.41244 1.03805 0.85007 0.77877 0.78182 0.77784 1.19753 1.19537 1.19989 1.61865 1.05756 1.51006 1.07846 1.22529 0.99771 0.92914 0.97678 1.22534 1.02048 1.00912 0.87151 0.92569 0.92789 0.91029 0.89277 0.92122 0.75808 0.90069 0.92419 0.87481 0.88640 0.91566 0.92033 0.87732 0.90101 0.76982 0.91317 0.94670 0.90593 0.91880 0.90429 0.90166 0.94449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.71 9.07 71.98 0.65 -3.06 16 2 C -0.14 -2.74 4.27 30.60 0.13 -2.61 16 3 C 0.07 1.39 2.18 44.17 0.10 1.49 16 4 H 0.12 2.03 7.97 -2.39 -0.02 2.01 16 5 C 0.52 13.49 6.69 87.66 0.59 14.07 16 6 O -0.57 -18.44 14.37 -3.03 -0.04 -18.48 16 7 N -0.72 -16.50 4.50 -463.06 -2.08 -18.58 16 8 C 0.14 3.14 5.82 86.38 0.50 3.64 16 9 C 0.02 0.32 3.25 42.18 0.14 0.46 16 10 H 0.11 1.77 7.64 -2.39 -0.02 1.75 16 11 C -0.12 -2.27 7.99 30.94 0.25 -2.02 16 12 C 0.01 0.17 6.38 83.57 0.53 0.70 16 13 N -0.46 -13.53 5.73 -906.76 -5.20 -18.72 16 14 C 0.02 0.60 5.09 85.56 0.44 1.03 16 15 C 0.44 19.89 7.47 87.65 0.66 20.55 16 16 O -0.62 -33.09 15.03 -3.07 -0.05 -33.14 16 17 N -0.57 -27.88 5.29 -306.99 -1.62 -29.50 16 18 C -0.33 -18.23 9.68 84.04 0.81 -17.42 16 19 H 0.08 4.52 7.16 -2.91 -0.02 4.50 16 20 C -0.01 -0.47 5.50 84.93 0.47 0.00 16 21 N -0.92 -47.75 13.05 21.66 0.28 -47.47 16 22 Si 0.99 42.00 29.55 68.60 2.03 44.02 16 23 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 24 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 25 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 26 N -0.54 -11.28 4.71 -927.71 -4.37 -15.65 16 27 C 0.02 0.40 8.50 127.69 1.08 1.48 16 28 C 0.02 0.31 9.45 127.69 1.21 1.51 16 29 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.05 1.41 5.73 -2.39 -0.01 1.39 16 31 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.09 1.50 6.82 -2.39 -0.02 1.49 16 33 H 0.06 1.37 6.72 -2.39 -0.02 1.36 16 34 H 0.40 8.65 4.53 -92.71 -0.42 8.23 16 35 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.06 1.47 7.88 -2.39 -0.02 1.45 16 37 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.10 1.89 7.94 -2.38 -0.02 1.87 16 39 H 0.07 1.87 7.83 -2.39 -0.02 1.85 16 40 H 0.06 2.13 7.99 -2.39 -0.02 2.12 16 41 H 0.10 2.82 6.53 -2.39 -0.02 2.80 16 42 H 0.08 2.14 7.56 -2.39 -0.02 2.12 16 43 H 0.40 18.21 7.90 -92.71 -0.73 17.48 16 44 H 0.28 13.56 8.31 -92.70 -0.77 12.79 16 45 H 0.03 0.66 6.33 -2.39 -0.02 0.65 16 46 H 0.08 1.36 8.07 -2.39 -0.02 1.34 16 47 H 0.06 1.68 6.03 -2.39 -0.01 1.66 16 48 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 49 H 0.08 1.01 8.05 -2.39 -0.02 1.00 16 50 H 0.04 0.49 6.80 -2.39 -0.02 0.47 16 Total: -1.00 -70.77 389.41 -3.70 -74.46 By element: Atomic # 1 Polarization: 43.42 SS G_CDS: -0.20 Total: 43.23 kcal Atomic # 6 Polarization: 12.28 SS G_CDS: 7.55 Total: 19.83 kcal Atomic # 7 Polarization: -116.93 SS G_CDS: -12.99 Total: -129.92 kcal Atomic # 8 Polarization: -51.53 SS G_CDS: -0.09 Total: -51.62 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.02 kcal Total: -70.77 -3.70 -74.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670712990.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.019 kcal (2) G-P(sol) polarization free energy of solvation -70.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.73 seconds