Wall clock time and date at job start Fri Apr 10 2020 14:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86797 * 120.00039 * 2 1 4 4 H 1.48502 * 109.46733 * 239.99466 * 3 2 1 5 5 H 1.48495 * 109.47191 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47189 * 119.99761 * 3 2 1 7 7 C 1.38953 * 119.99549 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99515 * 180.02562 * 7 2 1 9 9 N 1.37092 * 120.00362 * 0.02562 * 7 2 1 10 10 C 1.34772 * 120.00393 * 179.97438 * 9 7 2 11 11 O 1.21298 * 119.99503 * 0.02562 * 10 9 7 12 12 C 1.50700 * 120.00273 * 179.97438 * 10 9 7 13 13 N 1.46505 * 109.46795 * 180.02562 * 12 10 9 14 14 C 1.34775 * 119.99562 * 180.02562 * 13 12 10 15 15 O 1.21560 * 120.00214 * 0.02562 * 14 13 12 16 16 C 1.47845 * 119.99846 * 180.02562 * 14 13 12 17 17 C 1.39553 * 120.55516 * 359.97438 * 16 14 13 18 18 N 1.31664 * 120.59003 * 180.02562 * 17 16 14 19 19 C 1.31950 * 121.89042 * 359.97438 * 18 17 16 20 20 C 1.38405 * 121.06564 * 359.97438 * 19 18 17 21 21 Br 1.89097 * 120.35697 * 180.02562 * 20 19 18 22 22 C 1.38485 * 119.28275 * 0.02562 * 20 19 18 23 23 H 0.97001 * 120.00072 * 0.02562 * 1 2 3 24 24 H 0.97005 * 119.99861 * 359.97438 * 9 7 2 25 25 H 1.08998 * 109.46828 * 60.00609 * 12 10 9 26 26 H 1.09000 * 109.47346 * 299.99917 * 12 10 9 27 27 H 0.96998 * 120.00390 * 0.02562 * 13 12 10 28 28 H 1.08001 * 119.70681 * 359.97438 * 17 16 14 29 29 H 1.08000 * 119.46881 * 179.97438 * 19 18 17 30 30 H 1.07995 * 120.85875 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6962 -1.2125 5 1 1.2831 2.7464 -0.0006 6 1 3.1018 1.6964 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0887 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9971 -3.5579 0.0005 11 8 3.2100 -3.5579 0.0010 12 6 1.2435 -4.8630 0.0011 13 7 2.1956 -5.9765 0.0016 14 6 1.7462 -7.2471 0.0017 15 8 0.5511 -7.4692 0.0008 16 6 2.7069 -8.3709 0.0027 17 6 4.0814 -8.1292 0.0032 18 7 4.9376 -9.1295 0.0036 19 6 4.5397 -10.3876 0.0042 20 6 3.1940 -10.7111 0.0049 21 35 2.6463 -12.5210 0.0064 22 6 2.2531 -9.6950 0.0044 23 1 -0.4850 0.8400 -0.0004 24 1 0.3532 -2.3906 0.0005 25 1 0.6166 -4.9209 -0.8887 26 1 0.6172 -4.9205 0.8914 27 1 3.1492 -5.7993 0.0019 28 1 4.4461 -7.1127 0.0023 29 1 5.2761 -11.1777 0.0041 30 1 1.1965 -9.9185 0.0045 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343546179.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:49:13 Heat of formation + Delta-G solvation = -34.319505 kcal Electronic energy + Delta-G solvation = -18414.476671 eV Core-core repulsion = 15063.087015 eV Total energy + Delta-G solvation = -3351.389655 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 327.001 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.92408 -39.29703 -38.13813 -34.70248 -33.92414 -33.47431 -32.53391 -31.44232 -30.01950 -27.93671 -25.16747 -24.03120 -23.74406 -20.66747 -19.76649 -18.48882 -17.97946 -17.29357 -16.88154 -15.73708 -15.56857 -15.25338 -15.03420 -14.59783 -14.48909 -14.03452 -13.76907 -13.64834 -13.39455 -12.73054 -12.29619 -12.08613 -11.76329 -11.68240 -11.14679 -10.89361 -10.54876 -10.47616 -10.34761 -10.17924 -9.79010 -9.68521 -9.40261 -9.00888 -8.72533 -8.16668 -6.57010 -3.99358 0.16484 0.58424 1.04871 2.61656 3.02292 3.09969 3.18915 3.23233 3.42922 3.66467 3.89008 4.05752 4.27369 4.38640 4.46881 4.66733 4.77414 4.94370 5.11259 5.39771 5.54769 5.78116 5.83679 5.92346 5.96858 6.42774 7.31302 7.40748 7.52353 7.84763 8.13276 8.37988 8.98426 9.32030 9.79300 10.59594 Molecular weight = 327.00amu Principal moments of inertia in cm(-1) A = 0.048794 B = 0.002158 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.706348 B =12972.260768 C =13530.822761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.027 3.973 3 Si 0.934 3.066 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.307 4.307 8 H 0.106 0.894 9 N -0.546 5.546 10 C 0.425 3.575 11 O -0.598 6.598 12 C 0.108 3.892 13 N -0.697 5.697 14 C 0.561 3.439 15 O -0.537 6.537 16 C -0.173 4.173 17 C 0.152 3.848 18 N -0.474 5.474 19 C 0.152 3.848 20 C -0.158 4.158 21 Br -0.027 7.027 22 C 0.011 3.989 23 H 0.276 0.724 24 H 0.396 0.604 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.411 0.589 28 H 0.173 0.827 29 H 0.170 0.830 30 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.245 -23.418 0.013 23.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.176 4.176 3 Si 0.761 3.239 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.436 4.436 8 H 0.124 0.876 9 N -0.180 5.180 10 C 0.211 3.789 11 O -0.485 6.485 12 C -0.019 4.019 13 N -0.351 5.351 14 C 0.346 3.654 15 O -0.416 6.416 16 C -0.179 4.179 17 C -0.006 4.006 18 N -0.182 5.182 19 C -0.007 4.007 20 C -0.240 4.240 21 Br 0.057 6.943 22 C -0.017 4.017 23 H 0.086 0.914 24 H 0.230 0.770 25 H 0.106 0.894 26 H 0.106 0.894 27 H 0.250 0.750 28 H 0.190 0.810 29 H 0.187 0.813 30 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 4.736 -23.822 0.013 24.288 hybrid contribution -0.601 1.184 -0.001 1.328 sum 4.134 -22.637 0.012 23.012 Atomic orbital electron populations 1.69602 1.06042 1.28760 1.48932 1.25341 0.95675 1.00003 0.96613 0.85858 0.78791 0.80045 0.79215 1.19720 1.20822 1.19716 1.19689 0.93474 0.81939 1.48519 0.87636 1.41780 1.09518 1.04458 1.62248 1.19667 0.88288 0.84920 0.86037 1.90501 1.13631 1.86752 1.57618 1.21034 0.91695 0.85489 1.03680 1.45601 1.11901 1.04414 1.73163 1.17814 0.87765 0.82453 0.77415 1.90794 1.15722 1.84714 1.50343 1.21074 0.95326 0.94497 1.07040 1.23367 0.88338 0.99438 0.89501 1.67915 1.38209 0.99348 1.12756 1.23107 0.92479 0.94386 0.90712 1.22919 0.96963 0.92797 1.11289 1.96781 1.91183 1.08588 1.97701 1.21721 1.01048 0.89974 0.88926 0.91447 0.76982 0.89385 0.89391 0.74976 0.80993 0.81286 0.82347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.35 13.05 55.50 0.72 -22.62 16 2 C 0.03 0.69 5.50 -17.47 -0.10 0.59 16 3 Si 0.93 20.12 29.55 -169.99 -5.02 15.10 16 4 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 5 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 6 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 7 C -0.31 -8.12 9.68 -14.93 -0.14 -8.26 16 8 H 0.11 2.90 7.16 -52.49 -0.38 2.52 16 9 N -0.55 -13.05 5.29 -10.96 -0.06 -13.11 16 10 C 0.43 9.29 7.85 -10.99 -0.09 9.20 16 11 O -0.60 -14.59 15.24 5.54 0.08 -14.50 16 12 C 0.11 1.86 6.15 -5.19 -0.03 1.83 16 13 N -0.70 -10.73 5.48 -62.43 -0.34 -11.08 16 14 C 0.56 8.31 7.78 -12.33 -0.10 8.21 16 15 O -0.54 -9.37 16.42 5.31 0.09 -9.28 16 16 C -0.17 -2.10 5.89 -104.83 -0.62 -2.72 16 17 C 0.15 1.70 10.71 -17.13 -0.18 1.51 16 18 N -0.47 -5.23 10.34 -12.89 -0.13 -5.36 16 19 C 0.15 1.40 10.93 -17.44 -0.19 1.21 16 20 C -0.16 -1.49 6.24 -39.43 -0.25 -1.74 16 21 Br -0.03 -0.22 33.73 -68.01 -2.29 -2.51 16 22 C 0.01 0.12 9.48 -38.84 -0.37 -0.24 16 23 H 0.28 6.82 8.31 -40.82 -0.34 6.48 16 24 H 0.40 9.10 7.90 -40.82 -0.32 8.78 16 25 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 26 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 27 H 0.41 6.07 5.50 -40.82 -0.22 5.85 16 28 H 0.17 1.72 6.42 -52.49 -0.34 1.39 16 29 H 0.17 1.09 8.06 -52.49 -0.42 0.67 16 30 H 0.16 1.68 7.74 -52.49 -0.41 1.27 16 LS Contribution 298.01 15.07 4.49 4.49 Total: -1.00 -30.10 298.01 -6.59 -36.70 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: -2.07 Total: 12.59 kcal Atomic # 6 Polarization: 11.66 SS G_CDS: -2.06 Total: 9.60 kcal Atomic # 7 Polarization: -52.37 SS G_CDS: 0.19 Total: -52.18 kcal Atomic # 8 Polarization: -23.96 SS G_CDS: 0.17 Total: -23.79 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Atomic # 35 Polarization: -0.22 SS G_CDS: -2.29 Total: -2.51 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -30.10 -6.59 -36.70 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343546179.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.376 kcal (2) G-P(sol) polarization free energy of solvation -30.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds