Wall clock time and date at job start Fri Apr 10 2020 14:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86797 * 120.00039 * 2 1 4 4 H 1.48502 * 109.46733 * 239.99466 * 3 2 1 5 5 H 1.48495 * 109.47191 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47189 * 119.99761 * 3 2 1 7 7 C 1.38953 * 119.99549 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99515 * 180.02562 * 7 2 1 9 9 N 1.37092 * 120.00362 * 0.02562 * 7 2 1 10 10 C 1.34772 * 120.00393 * 179.97438 * 9 7 2 11 11 O 1.21298 * 119.99503 * 0.02562 * 10 9 7 12 12 C 1.50700 * 120.00273 * 179.97438 * 10 9 7 13 13 N 1.46505 * 109.46795 * 180.02562 * 12 10 9 14 14 C 1.34775 * 119.99562 * 180.02562 * 13 12 10 15 15 O 1.21560 * 120.00214 * 0.02562 * 14 13 12 16 16 C 1.47845 * 119.99846 * 180.02562 * 14 13 12 17 17 C 1.39553 * 120.55516 * 359.97438 * 16 14 13 18 18 N 1.31664 * 120.59003 * 180.02562 * 17 16 14 19 19 C 1.31950 * 121.89042 * 359.97438 * 18 17 16 20 20 C 1.38405 * 121.06564 * 359.97438 * 19 18 17 21 21 Br 1.89097 * 120.35697 * 180.02562 * 20 19 18 22 22 C 1.38485 * 119.28275 * 0.02562 * 20 19 18 23 23 H 0.97001 * 120.00072 * 0.02562 * 1 2 3 24 24 H 0.97005 * 119.99861 * 359.97438 * 9 7 2 25 25 H 1.08998 * 109.46828 * 60.00609 * 12 10 9 26 26 H 1.09000 * 109.47346 * 299.99917 * 12 10 9 27 27 H 0.96998 * 120.00390 * 0.02562 * 13 12 10 28 28 H 1.08001 * 119.70681 * 359.97438 * 17 16 14 29 29 H 1.08000 * 119.46881 * 179.97438 * 19 18 17 30 30 H 1.07995 * 120.85875 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6962 -1.2125 5 1 1.2831 2.7464 -0.0006 6 1 3.1018 1.6964 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0887 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9971 -3.5579 0.0005 11 8 3.2100 -3.5579 0.0010 12 6 1.2435 -4.8630 0.0011 13 7 2.1956 -5.9765 0.0016 14 6 1.7462 -7.2471 0.0017 15 8 0.5511 -7.4692 0.0008 16 6 2.7069 -8.3709 0.0027 17 6 4.0814 -8.1292 0.0032 18 7 4.9376 -9.1295 0.0036 19 6 4.5397 -10.3876 0.0042 20 6 3.1940 -10.7111 0.0049 21 35 2.6463 -12.5210 0.0064 22 6 2.2531 -9.6950 0.0044 23 1 -0.4850 0.8400 -0.0004 24 1 0.3532 -2.3906 0.0005 25 1 0.6166 -4.9209 -0.8887 26 1 0.6172 -4.9205 0.8914 27 1 3.1492 -5.7993 0.0019 28 1 4.4461 -7.1127 0.0023 29 1 5.2761 -11.1777 0.0041 30 1 1.1965 -9.9185 0.0045 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343546179.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:49:12 Heat of formation + Delta-G solvation = -56.088493 kcal Electronic energy + Delta-G solvation = -18415.420645 eV Core-core repulsion = 15063.087015 eV Total energy + Delta-G solvation = -3352.333629 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 327.001 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.88832 -40.61358 -39.72948 -36.31449 -35.50456 -34.32478 -33.53168 -33.28894 -30.82289 -29.36001 -26.74917 -25.27563 -24.60014 -21.82994 -21.43510 -20.14199 -19.38188 -18.23170 -17.88439 -17.32372 -16.87607 -16.58333 -16.47759 -15.96574 -15.78711 -15.49554 -15.03632 -14.78431 -14.44440 -13.95864 -13.63350 -13.54723 -13.52412 -12.89898 -12.50139 -12.46544 -12.13841 -11.60934 -11.56003 -11.55912 -11.06924 -10.71914 -10.57234 -10.36095 -10.12653 -10.08230 -8.50967 -6.01003 -0.69335 -0.25244 0.31089 1.38349 1.43628 1.53951 1.57045 1.81952 1.90693 2.30130 2.50738 3.06997 3.08130 3.16562 3.47552 3.51256 3.57603 3.80996 4.05860 4.21889 4.41050 4.42603 4.60467 4.70711 5.07230 5.14783 5.38672 5.91326 6.29680 6.47842 6.50708 6.92294 7.03682 7.43926 7.93866 8.65574 Molecular weight = 327.00amu Principal moments of inertia in cm(-1) A = 0.048794 B = 0.002158 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.706348 B =12972.260768 C =13530.822761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.010 4.010 3 Si 0.996 3.004 4 H -0.270 1.270 5 H -0.273 1.273 6 H -0.270 1.270 7 C -0.337 4.337 8 H 0.087 0.913 9 N -0.558 5.558 10 C 0.432 3.568 11 O -0.623 6.623 12 C 0.120 3.880 13 N -0.698 5.698 14 C 0.567 3.433 15 O -0.566 6.566 16 C -0.186 4.186 17 C 0.155 3.845 18 N -0.488 5.488 19 C 0.161 3.839 20 C -0.158 4.158 21 Br -0.009 7.009 22 C 0.010 3.990 23 H 0.280 0.720 24 H 0.399 0.601 25 H 0.101 0.899 26 H 0.101 0.899 27 H 0.414 0.586 28 H 0.179 0.821 29 H 0.200 0.800 30 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.846 -24.486 0.014 24.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.211 4.211 3 Si 0.819 3.181 4 H -0.195 1.195 5 H -0.197 1.197 6 H -0.195 1.195 7 C -0.466 4.466 8 H 0.105 0.895 9 N -0.193 5.193 10 C 0.219 3.781 11 O -0.511 6.511 12 C -0.007 4.007 13 N -0.352 5.352 14 C 0.354 3.646 15 O -0.446 6.446 16 C -0.192 4.192 17 C -0.004 4.004 18 N -0.196 5.196 19 C 0.003 3.997 20 C -0.239 4.239 21 Br 0.075 6.925 22 C -0.017 4.017 23 H 0.089 0.911 24 H 0.234 0.766 25 H 0.119 0.881 26 H 0.119 0.881 27 H 0.254 0.746 28 H 0.196 0.804 29 H 0.216 0.784 30 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 5.338 -24.913 0.014 25.478 hybrid contribution -0.754 1.339 -0.001 1.537 sum 4.584 -23.574 0.013 24.015 Atomic orbital electron populations 1.69668 1.06992 1.29708 1.49206 1.26112 0.96514 1.02664 0.95783 0.84945 0.77735 0.76324 0.79122 1.19484 1.19748 1.19477 1.19702 0.93009 0.83510 1.50415 0.89456 1.41829 1.09637 1.04590 1.63287 1.20377 0.88138 0.85871 0.83714 1.90480 1.15076 1.87495 1.58071 1.20866 0.91495 0.83462 1.04890 1.45575 1.11744 1.04313 1.73530 1.18104 0.87794 0.82533 0.76195 1.90777 1.17037 1.85054 1.51731 1.20812 0.95080 0.93938 1.09391 1.23444 0.87944 1.00001 0.88963 1.67984 1.38215 0.99991 1.13458 1.23613 0.93041 0.94426 0.88657 1.22991 0.96848 0.93403 1.10678 1.96810 1.91143 1.06884 1.97615 1.21793 1.01465 0.89893 0.88598 0.91066 0.76639 0.88132 0.88137 0.74575 0.80422 0.78378 0.82331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.78 13.05 21.66 0.28 -47.50 16 2 C -0.01 -0.51 5.50 84.93 0.47 -0.04 16 3 Si 1.00 40.98 29.55 68.60 2.03 43.01 16 4 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 5 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 6 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 7 C -0.34 -18.09 9.68 84.04 0.81 -17.27 16 8 H 0.09 4.92 7.16 -2.91 -0.02 4.89 16 9 N -0.56 -27.03 5.29 -306.99 -1.62 -28.65 16 10 C 0.43 18.94 7.85 87.66 0.69 19.63 16 11 O -0.62 -30.63 15.24 -3.09 -0.05 -30.68 16 12 C 0.12 4.07 6.15 85.63 0.53 4.60 16 13 N -0.70 -21.10 5.48 -469.69 -2.57 -23.68 16 14 C 0.57 16.46 7.78 86.79 0.68 17.14 16 15 O -0.57 -19.43 16.42 -3.90 -0.06 -19.50 16 16 C -0.19 -4.35 5.89 -20.00 -0.12 -4.46 16 17 C 0.15 3.29 10.71 85.04 0.91 4.20 16 18 N -0.49 -9.91 10.34 -194.69 -2.01 -11.93 16 19 C 0.16 2.59 10.93 84.71 0.93 3.51 16 20 C -0.16 -2.67 6.24 22.37 0.14 -2.53 16 21 Br -0.01 -0.13 33.73 -20.37 -0.69 -0.81 16 22 C 0.01 0.22 9.48 22.75 0.22 0.43 16 23 H 0.28 13.72 8.31 -92.71 -0.77 12.95 16 24 H 0.40 18.55 7.90 -92.70 -0.73 17.82 16 25 H 0.10 3.20 8.14 -2.39 -0.02 3.18 16 26 H 0.10 3.20 8.14 -2.39 -0.02 3.18 16 27 H 0.41 12.09 5.50 -92.71 -0.51 11.58 16 28 H 0.18 3.44 6.42 -2.91 -0.02 3.42 16 29 H 0.20 1.92 8.06 -2.91 -0.02 1.89 16 30 H 0.16 3.22 7.74 -2.91 -0.02 3.20 16 Total: -1.00 -63.39 298.01 0.53 -62.86 By element: Atomic # 1 Polarization: 31.70 SS G_CDS: -0.02 Total: 31.68 kcal Atomic # 6 Polarization: 19.96 SS G_CDS: 5.25 Total: 25.20 kcal Atomic # 7 Polarization: -105.83 SS G_CDS: -5.93 Total: -111.76 kcal Atomic # 8 Polarization: -50.07 SS G_CDS: -0.11 Total: -50.18 kcal Atomic # 14 Polarization: 40.98 SS G_CDS: 2.03 Total: 43.01 kcal Atomic # 35 Polarization: -0.13 SS G_CDS: -0.69 Total: -0.81 kcal Total: -63.39 0.53 -62.86 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343546179.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.770 kcal (2) G-P(sol) polarization free energy of solvation -63.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds