Wall clock time and date at job start Fri Apr 10 2020 14:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 120.00339 * 2 1 4 4 H 1.48504 * 109.47028 * 270.00564 * 3 2 1 5 5 H 1.48499 * 109.46843 * 30.00093 * 3 2 1 6 6 H 1.48497 * 109.47280 * 150.00269 * 3 2 1 7 7 C 1.37876 * 119.99602 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99673 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00259 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.46998 * 180.02562 * 9 7 2 11 11 C 1.34776 * 119.99894 * 179.97438 * 10 9 7 12 12 O 1.21359 * 119.99911 * 0.02562 * 11 10 9 13 13 C 1.49357 * 120.00109 * 180.02562 * 11 10 9 14 14 O 1.21368 * 119.99751 * 0.02562 * 13 11 10 15 15 N 1.34776 * 120.00109 * 179.97438 * 13 11 10 16 16 C 1.39748 * 120.00261 * 184.67825 * 15 13 11 17 17 C 1.38950 * 120.49082 * 145.03044 * 16 15 13 18 18 N 1.31774 * 120.67695 * 179.97438 * 17 16 15 19 19 C 1.31885 * 121.81074 * 0.02562 * 18 17 16 20 20 C 1.38330 * 120.91912 * 359.97438 * 19 18 17 21 21 Br 1.89103 * 120.38869 * 180.02562 * 20 19 18 22 22 C 1.38617 * 119.22610 * 0.02562 * 20 19 18 23 23 H 0.96995 * 119.99619 * 359.97438 * 1 2 3 24 24 H 1.08993 * 109.46794 * 60.00460 * 9 7 2 25 25 H 1.08997 * 109.47076 * 300.00243 * 9 7 2 26 26 H 0.96999 * 120.00274 * 0.02562 * 10 9 7 27 27 H 0.97003 * 119.99648 * 4.67896 * 15 13 11 28 28 H 1.08004 * 119.66094 * 359.95966 * 17 16 15 29 29 H 1.08003 * 119.54134 * 179.97438 * 19 18 17 30 30 H 1.07996 * 120.82999 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 7 2.2029 -3.6127 -0.0005 11 6 1.7537 -4.8834 0.0000 12 8 0.5605 -5.1051 0.0000 13 6 2.7242 -6.0187 0.0006 14 8 3.9174 -5.7969 0.0010 15 7 2.2749 -7.2893 0.0016 16 6 3.1792 -8.3502 0.1009 17 6 2.8385 -9.5043 0.7955 18 7 3.6882 -10.5071 0.8910 19 6 4.8847 -10.4594 0.3385 20 6 5.2969 -9.3446 -0.3693 21 35 7.0157 -9.2925 -1.1561 22 6 4.4352 -8.2661 -0.4951 23 1 -0.4849 0.8400 0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6246 -2.5571 0.8896 26 1 3.1566 -3.4355 -0.0002 27 1 1.3238 -7.4675 -0.0665 28 1 1.8675 -9.5803 1.2622 29 1 5.5521 -11.3024 0.4400 30 1 4.7301 -7.3829 -1.0423 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427864215.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:49:17 Heat of formation + Delta-G solvation = -50.723423 kcal Electronic energy + Delta-G solvation = -18549.573611 eV Core-core repulsion = 15197.472629 eV Total energy + Delta-G solvation = -3352.100983 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 327.001 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.38779 -41.06652 -39.61515 -36.94171 -36.06489 -34.39282 -34.25192 -31.89327 -30.56706 -29.73204 -26.74039 -25.16638 -24.44534 -23.26422 -21.56883 -20.37311 -18.75273 -18.42613 -18.16504 -17.65763 -17.32636 -17.01636 -16.70344 -16.02379 -15.53520 -15.22460 -15.13485 -14.91042 -14.45656 -14.08660 -13.93364 -13.48459 -13.03357 -12.82550 -12.73755 -12.53126 -12.27038 -12.23027 -11.53950 -11.52420 -11.09447 -10.85298 -10.64298 -10.37511 -10.07966 -9.63602 -8.32240 -6.48137 -0.45973 -0.17381 0.32884 0.39447 1.12213 1.44825 1.45321 1.57137 1.99413 2.34368 2.47780 2.57647 3.03572 3.33749 3.37842 3.56578 3.68177 3.80333 4.01599 4.64145 4.70772 4.83203 4.97042 5.16960 5.22048 5.33615 5.48751 5.74187 5.79175 6.35829 6.54814 6.61303 6.66223 6.95925 7.24907 8.79289 Molecular weight = 327.00amu Principal moments of inertia in cm(-1) A = 0.021154 B = 0.002677 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.284946 B =10457.148880 C =11645.798466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.012 3.988 3 Si 0.980 3.020 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.563 4.563 8 H 0.080 0.920 9 C 0.263 3.737 10 N -0.671 5.671 11 C 0.496 3.504 12 O -0.553 6.553 13 C 0.524 3.476 14 O -0.513 6.513 15 N -0.626 5.626 16 C 0.090 3.910 17 C 0.109 3.891 18 N -0.466 5.466 19 C 0.120 3.880 20 C -0.134 4.134 21 Br -0.021 7.021 22 C -0.063 4.063 23 H 0.271 0.729 24 H 0.007 0.993 25 H 0.007 0.993 26 H 0.413 0.587 27 H 0.438 0.562 28 H 0.198 0.802 29 H 0.192 0.808 30 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.443 -22.529 -1.198 25.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.189 4.189 3 Si 0.804 3.196 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.184 1.184 7 C -0.600 4.600 8 H 0.098 0.902 9 C 0.141 3.859 10 N -0.321 5.321 11 C 0.276 3.724 12 O -0.433 6.433 13 C 0.306 3.694 14 O -0.388 6.388 15 N -0.275 5.275 16 C -0.008 4.008 17 C -0.051 4.051 18 N -0.174 5.174 19 C -0.038 4.038 20 C -0.216 4.216 21 Br 0.064 6.936 22 C -0.093 4.093 23 H 0.080 0.920 24 H 0.025 0.975 25 H 0.025 0.975 26 H 0.250 0.750 27 H 0.280 0.720 28 H 0.214 0.786 29 H 0.209 0.791 30 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 12.644 -23.055 -1.015 26.314 hybrid contribution -0.175 1.854 -0.416 1.908 sum 12.470 -21.201 -1.431 24.638 Atomic orbital electron populations 1.70091 1.07934 1.28735 1.49511 1.25932 0.95780 1.03487 0.93701 0.85213 0.78488 0.77292 0.78622 1.19611 1.20725 1.18382 1.21571 0.94290 0.90607 1.53558 0.90234 1.18846 0.88280 0.82984 0.95750 1.46161 1.12506 1.04869 1.68607 1.20042 0.88301 0.84691 0.79415 1.90737 1.16889 1.84884 1.50760 1.20185 0.88268 0.84270 0.76720 1.90754 1.16455 1.84724 1.46851 1.42887 1.11995 1.02623 1.70000 1.18873 0.91657 0.90260 0.99991 1.23292 1.00981 0.87265 0.93551 1.67955 1.03099 1.27789 1.18543 1.23245 0.92988 0.96351 0.91257 1.22945 0.95020 0.98307 1.05325 1.96783 1.16870 1.98933 1.81022 1.21791 0.92758 0.98411 0.96318 0.92036 0.97481 0.97524 0.75011 0.72032 0.78566 0.79113 0.83439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.27 13.29 21.45 0.28 -52.98 16 2 C 0.01 0.62 5.46 84.65 0.46 1.08 16 3 Si 0.98 41.42 29.54 68.60 2.03 43.44 16 4 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 5 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 6 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 7 C -0.56 -29.70 9.28 25.60 0.24 -29.47 16 8 H 0.08 3.90 7.60 -2.91 -0.02 3.88 16 9 C 0.26 13.55 5.43 85.63 0.46 14.02 16 10 N -0.67 -27.80 5.54 -468.24 -2.59 -30.40 16 11 C 0.50 18.49 7.89 87.24 0.69 19.17 16 12 O -0.55 -23.00 16.48 -3.28 -0.05 -23.05 16 13 C 0.52 15.60 7.74 87.24 0.68 16.27 16 14 O -0.51 -16.57 13.95 -3.30 -0.05 -16.62 16 15 N -0.63 -14.02 5.33 -304.54 -1.62 -15.64 16 16 C 0.09 1.86 6.32 38.30 0.24 2.10 16 17 C 0.11 1.84 11.13 84.87 0.94 2.78 16 18 N -0.47 -8.45 10.35 -195.20 -2.02 -10.47 16 19 C 0.12 2.00 10.94 84.71 0.93 2.92 16 20 C -0.13 -2.56 6.24 22.38 0.14 -2.42 16 21 Br -0.02 -0.36 33.73 -20.37 -0.69 -1.05 16 22 C -0.06 -1.43 8.57 22.61 0.19 -1.23 16 23 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 24 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 25 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 26 H 0.41 15.62 7.79 -92.71 -0.72 14.90 16 27 H 0.44 8.10 8.30 -92.71 -0.77 7.33 16 28 H 0.20 2.09 8.06 -2.91 -0.02 2.06 16 29 H 0.19 2.11 8.06 -2.91 -0.02 2.08 16 30 H 0.15 3.77 6.32 -2.91 -0.02 3.76 16 Total: -1.00 -64.09 299.24 -0.01 -64.10 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: -0.27 Total: 17.45 kcal Atomic # 6 Polarization: 20.26 SS G_CDS: 4.97 Total: 25.23 kcal Atomic # 7 Polarization: -103.54 SS G_CDS: -5.95 Total: -109.50 kcal Atomic # 8 Polarization: -39.57 SS G_CDS: -0.10 Total: -39.67 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.44 kcal Atomic # 35 Polarization: -0.36 SS G_CDS: -0.69 Total: -1.05 kcal Total: -64.09 -0.01 -64.10 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427864215.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.376 kcal (2) G-P(sol) polarization free energy of solvation -64.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds