Wall clock time and date at job start Fri Apr 10 2020 14:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46894 * 111.00370 * 2 1 4 4 C 1.46906 * 110.99555 * 123.94624 * 2 1 3 5 5 C 1.53002 * 109.46851 * 170.02705 * 4 2 1 6 6 N 1.46505 * 109.46975 * 185.83397 * 5 4 2 7 7 C 1.46496 * 119.99830 * 270.91129 * 6 5 4 8 8 C 1.53001 * 109.47509 * 269.99925 * 7 6 5 9 9 N 1.46894 * 109.47613 * 179.97438 * 8 7 6 10 10 C 1.46898 * 110.99728 * 66.04741 * 9 8 7 11 11 C 1.46900 * 111.00107 * 190.00068 * 9 8 7 12 12 C 1.34773 * 120.00008 * 90.91009 * 6 5 4 13 13 O 1.21589 * 119.99670 * 184.51998 * 12 6 5 14 14 N 1.34771 * 120.00125 * 4.52532 * 12 6 5 15 15 C 1.46500 * 119.99978 * 185.09319 * 14 12 6 16 16 C 1.53001 * 109.47186 * 184.89646 * 15 14 12 17 17 C 1.50700 * 115.54983 * 53.67199 * 16 15 14 18 18 H 1.08002 * 120.00046 * 215.54187 * 17 16 15 19 19 C 1.37873 * 120.00126 * 35.25949 * 17 16 15 20 20 N 1.31515 * 120.00313 * 0.37641 * 19 17 16 21 21 Si 1.86805 * 120.00400 * 180.37084 * 19 17 16 22 22 H 1.48503 * 109.46898 * 65.00169 * 21 19 17 23 23 H 1.48498 * 109.47417 * 185.00331 * 21 19 17 24 24 H 1.48494 * 109.47022 * 305.00710 * 21 19 17 25 25 C 1.53004 * 117.50005 * 199.33971 * 16 15 14 26 26 C 1.53002 * 117.50076 * 268.00063 * 16 15 14 27 27 H 1.09000 * 109.47169 * 291.28969 * 1 2 3 28 28 H 1.09007 * 109.46767 * 51.28416 * 1 2 3 29 29 H 1.08992 * 109.47413 * 171.28038 * 1 2 3 30 30 H 1.08997 * 109.47463 * 183.95164 * 3 2 1 31 31 H 1.09003 * 109.47054 * 303.94863 * 3 2 1 32 32 H 1.08997 * 109.47631 * 63.94793 * 3 2 1 33 33 H 1.09005 * 109.46965 * 50.03357 * 4 2 1 34 34 H 1.08994 * 109.47775 * 290.02796 * 4 2 1 35 35 H 1.08999 * 109.47264 * 65.83383 * 5 4 2 36 36 H 1.09001 * 109.47144 * 305.83073 * 5 4 2 37 37 H 1.09003 * 109.47276 * 30.00020 * 7 6 5 38 38 H 1.09000 * 109.47110 * 150.00060 * 7 6 5 39 39 H 1.08994 * 109.46984 * 300.00446 * 8 7 6 40 40 H 1.09000 * 109.46825 * 59.99960 * 8 7 6 41 41 H 1.09001 * 109.47248 * 60.00461 * 10 9 8 42 42 H 1.09002 * 109.47273 * 180.02562 * 10 9 8 43 43 H 1.09001 * 109.47208 * 299.99830 * 10 9 8 44 44 H 1.08998 * 109.47149 * 60.00491 * 11 9 8 45 45 H 1.09001 * 109.46868 * 180.02562 * 11 9 8 46 46 H 1.08999 * 109.46994 * 300.00078 * 11 9 8 47 47 H 0.96998 * 120.00343 * 5.09192 * 14 12 6 48 48 H 1.08994 * 109.47283 * 64.89723 * 15 14 12 49 49 H 1.08998 * 109.47061 * 304.89674 * 15 14 12 50 50 H 0.96997 * 120.00321 * 174.98668 * 20 19 17 51 51 H 1.09003 * 117.49781 * 215.00403 * 25 16 15 52 52 H 1.09001 * 117.49796 * 0.02562 * 25 16 15 53 53 H 1.09000 * 117.49803 * 359.97438 * 26 16 15 54 54 H 1.08993 * 117.49934 * 144.97323 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.9953 -0.7659 1.1378 5 6 3.5045 -0.9547 0.9709 6 7 4.0065 -1.8344 2.0294 7 6 4.4469 -1.2668 3.3061 8 6 5.9382 -0.9335 3.2288 9 7 6.3797 -0.3637 4.5087 10 6 6.2998 -1.3610 5.5844 11 6 7.7377 0.1856 4.4000 12 6 4.0631 -3.1659 1.8286 13 8 4.4016 -3.9034 2.7342 14 7 3.7447 -3.6800 0.6242 15 6 3.6979 -5.1321 0.4367 16 6 3.4350 -5.4479 -1.0371 17 6 4.3804 -4.8042 -2.0184 18 1 4.0170 -4.4714 -2.9795 19 6 5.7079 -4.6347 -1.6870 20 7 6.1509 -5.0415 -0.5174 21 14 6.8777 -3.8274 -2.8993 22 1 6.4746 -2.4136 -3.1094 23 1 8.2600 -3.8729 -2.3586 24 1 6.8281 -4.5537 -4.1935 25 6 2.9054 -6.8425 -1.3773 26 6 1.9793 -5.6274 -1.4724 27 1 -0.3633 0.3731 0.9575 28 1 -0.3633 0.6428 -0.8019 29 1 -0.3634 -1.0157 -0.1558 30 1 3.0828 1.3431 -0.0708 31 1 1.5899 1.9162 -0.8525 32 1 1.7044 1.8724 0.9232 33 1 1.5092 -1.7408 1.1755 34 1 1.7970 -0.2249 2.0629 35 1 4.0013 0.0132 1.0369 36 1 3.7093 -1.4028 -0.0014 37 1 3.8819 -0.3581 3.5139 38 1 4.2772 -1.9905 4.1033 39 1 6.5032 -1.8421 3.0210 40 1 6.1078 -0.2098 2.4316 41 1 6.9386 -2.2100 5.3409 42 1 6.6319 -0.9128 6.5208 43 1 5.2692 -1.7001 5.6897 44 1 7.7525 0.9710 3.6442 45 1 8.0399 0.6005 5.3615 46 1 8.4285 -0.6074 4.1136 47 1 3.5465 -3.0885 -0.1186 48 1 2.8977 -5.5516 1.0464 49 1 4.6505 -5.5682 0.7374 50 1 7.0975 -4.9891 -0.3123 51 1 3.2408 -7.2943 -2.3109 52 1 2.7439 -7.5349 -0.5511 53 1 1.2088 -5.5210 -0.7088 54 1 1.7052 -5.2795 -2.4684 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000574825039.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:47:55 Heat of formation + Delta-G solvation = 4.051626 kcal Electronic energy + Delta-G solvation = -30225.604033 eV Core-core repulsion = 26426.480931 eV Total energy + Delta-G solvation = -3799.123102 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 326.242 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.20398 -38.91813 -38.45627 -38.25102 -36.14728 -34.73263 -34.08176 -31.40546 -29.65653 -28.53577 -28.39835 -27.75204 -27.04759 -25.42108 -24.63443 -22.93640 -22.26881 -22.15574 -21.08555 -20.34478 -19.18341 -18.02851 -17.58559 -16.81858 -16.65968 -16.39554 -16.26325 -16.03109 -15.98992 -15.64032 -15.55697 -15.35089 -14.89303 -14.55085 -14.40533 -14.29882 -13.81922 -13.73117 -13.43841 -13.33777 -13.25647 -13.02760 -12.88626 -12.79196 -12.65204 -12.61862 -12.53918 -12.51665 -12.43907 -12.30529 -12.02946 -11.96640 -11.83062 -11.48092 -11.00516 -10.84917 -10.62414 -10.12115 -9.90814 -9.48041 -9.33671 -9.19977 -7.91482 -6.15629 1.42176 1.44566 1.50932 1.77143 2.37012 2.43043 2.92372 3.04007 3.13427 3.44199 3.69936 3.89997 3.91843 4.03454 4.16849 4.25213 4.30338 4.31774 4.41563 4.46111 4.51818 4.55224 4.57246 4.60570 4.63457 4.68201 4.74248 4.78972 4.80480 4.83368 4.84832 4.92785 4.95397 4.99019 4.99346 5.05233 5.06685 5.11549 5.15605 5.32021 5.56185 5.62375 5.63713 5.92988 5.98727 5.99336 6.02851 6.04804 6.11828 6.19978 6.41637 6.85172 7.30651 7.48917 7.85706 8.95342 Molecular weight = 326.24amu Principal moments of inertia in cm(-1) A = 0.007893 B = 0.004964 C = 0.003947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3546.569657 B = 5639.685148 C = 7093.045891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.559 5.559 3 C 0.020 3.980 4 C 0.052 3.948 5 C 0.120 3.880 6 N -0.627 5.627 7 C 0.146 3.854 8 C 0.048 3.952 9 N -0.541 5.541 10 C 0.022 3.978 11 C 0.023 3.977 12 C 0.699 3.301 13 O -0.644 6.644 14 N -0.695 5.695 15 C 0.194 3.806 16 C 0.011 3.989 17 C -0.500 4.500 18 H 0.057 0.943 19 C 0.037 3.963 20 N -0.888 5.888 21 Si 0.943 3.057 22 H -0.267 1.267 23 H -0.296 1.296 24 H -0.274 1.274 25 C -0.199 4.199 26 C -0.183 4.183 27 H 0.030 0.970 28 H 0.081 0.919 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.034 0.966 33 H 0.058 0.942 34 H 0.047 0.953 35 H 0.099 0.901 36 H 0.068 0.932 37 H 0.106 0.894 38 H 0.064 0.936 39 H 0.001 0.999 40 H 0.082 0.918 41 H 0.008 0.992 42 H 0.090 0.910 43 H 0.068 0.932 44 H 0.077 0.923 45 H 0.088 0.912 46 H 0.013 0.987 47 H 0.399 0.601 48 H 0.010 0.990 49 H 0.074 0.926 50 H 0.253 0.747 51 H 0.077 0.923 52 H 0.074 0.926 53 H 0.083 0.917 54 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.741 15.581 5.975 17.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.284 5.284 3 C -0.128 4.128 4 C -0.077 4.077 5 C -0.004 4.004 6 N -0.365 5.365 7 C 0.022 3.978 8 C -0.082 4.082 9 N -0.266 5.266 10 C -0.127 4.127 11 C -0.125 4.125 12 C 0.400 3.600 13 O -0.527 6.527 14 N -0.347 5.347 15 C 0.070 3.930 16 C 0.010 3.990 17 C -0.537 4.537 18 H 0.075 0.925 19 C -0.164 4.164 20 N -0.524 5.524 21 Si 0.769 3.231 22 H -0.192 1.192 23 H -0.222 1.222 24 H -0.199 1.199 25 C -0.238 4.238 26 C -0.220 4.220 27 H 0.049 0.951 28 H 0.100 0.900 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.096 0.904 32 H 0.052 0.948 33 H 0.077 0.923 34 H 0.065 0.935 35 H 0.117 0.883 36 H 0.086 0.914 37 H 0.124 0.876 38 H 0.082 0.918 39 H 0.019 0.981 40 H 0.100 0.900 41 H 0.027 0.973 42 H 0.109 0.891 43 H 0.086 0.914 44 H 0.096 0.904 45 H 0.107 0.893 46 H 0.031 0.969 47 H 0.236 0.764 48 H 0.029 0.971 49 H 0.092 0.908 50 H 0.062 0.938 51 H 0.095 0.905 52 H 0.092 0.908 53 H 0.101 0.899 54 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.517 15.243 6.427 17.438 hybrid contribution 1.133 -0.393 -0.508 1.302 sum -4.384 14.850 5.919 16.576 Atomic orbital electron populations 1.22382 0.86161 1.02576 1.00946 1.61876 1.09003 1.14934 1.42580 1.22509 1.01171 0.87810 1.01271 1.22357 0.95034 0.98237 0.92113 1.21506 0.93914 0.95011 0.89976 1.46993 1.68219 1.03947 1.17293 1.21184 0.93573 0.98851 0.84198 1.22409 0.96441 0.97114 0.92219 1.62057 1.25285 1.34571 1.04639 1.22472 1.01809 0.93285 0.95094 1.22465 0.87273 0.98990 1.03750 1.16091 0.78141 0.82361 0.83364 1.90784 1.57408 1.59740 1.44803 1.44812 1.72017 1.08320 1.09578 1.20545 0.99356 0.79284 0.93854 1.19245 0.91712 0.95553 0.92511 1.20620 0.93218 1.39327 1.00550 0.92457 1.25551 0.99516 0.95499 0.95883 1.70072 1.13833 1.47228 1.21309 0.85851 0.77924 0.79716 0.79580 1.19157 1.22202 1.19886 1.22946 1.06927 0.92292 1.01601 1.22914 0.94051 1.03516 1.01559 0.95093 0.90018 0.92023 0.91073 0.90359 0.94789 0.92339 0.93529 0.88318 0.91358 0.87573 0.91769 0.98109 0.90006 0.97336 0.89113 0.91373 0.90394 0.89317 0.96878 0.76448 0.97142 0.90798 0.93759 0.90472 0.90754 0.89899 0.89793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 9.60 127.69 1.23 1.73 16 2 N -0.56 -12.26 5.02 -948.86 -4.76 -17.02 16 3 C 0.02 0.34 9.32 127.69 1.19 1.53 16 4 C 0.05 1.26 5.28 86.30 0.46 1.72 16 5 C 0.12 3.26 5.11 86.38 0.44 3.70 16 6 N -0.63 -21.04 2.47 -839.83 -2.08 -23.11 16 7 C 0.15 4.24 5.37 86.38 0.46 4.70 16 8 C 0.05 1.39 5.28 86.30 0.46 1.85 16 9 N -0.54 -13.24 5.02 -948.87 -4.76 -18.00 16 10 C 0.02 0.52 9.32 127.69 1.19 1.71 16 11 C 0.02 0.47 9.57 127.69 1.22 1.70 16 12 C 0.70 30.92 8.27 179.06 1.48 32.40 16 13 O -0.64 -33.68 15.88 -4.00 -0.06 -33.75 16 14 N -0.70 -31.26 4.99 -478.55 -2.39 -33.65 16 15 C 0.19 9.65 4.65 86.38 0.40 10.05 16 16 C 0.01 0.50 2.02 -52.92 -0.11 0.39 16 17 C -0.50 -25.56 8.41 25.60 0.22 -25.34 16 18 H 0.06 2.90 7.81 -2.91 -0.02 2.88 16 19 C 0.04 1.94 5.25 84.65 0.44 2.38 16 20 N -0.89 -49.61 10.31 21.45 0.22 -49.39 16 21 Si 0.94 42.01 29.54 68.60 2.03 44.04 16 22 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 23 H -0.30 -13.46 7.11 99.48 0.71 -12.76 16 24 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 25 C -0.20 -8.67 9.96 30.62 0.30 -8.37 16 26 C -0.18 -7.41 9.92 30.62 0.30 -7.11 16 27 H 0.03 0.52 8.13 -2.39 -0.02 0.50 16 28 H 0.08 1.26 8.04 -2.38 -0.02 1.24 16 29 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.07 1.19 6.60 -2.39 -0.02 1.17 16 31 H 0.08 1.15 8.07 -2.39 -0.02 1.13 16 32 H 0.03 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.06 1.67 8.08 -2.38 -0.02 1.66 16 34 H 0.05 1.02 8.12 -2.39 -0.02 1.00 16 35 H 0.10 2.18 6.78 -2.39 -0.02 2.17 16 36 H 0.07 2.18 6.09 -2.39 -0.01 2.17 16 37 H 0.11 2.42 8.07 -2.39 -0.02 2.40 16 38 H 0.06 2.14 5.77 -2.39 -0.01 2.13 16 39 H 0.00 0.02 8.12 -2.39 -0.02 0.00 16 40 H 0.08 2.18 8.06 -2.39 -0.02 2.16 16 41 H 0.01 0.23 8.14 -2.39 -0.02 0.21 16 42 H 0.09 1.68 8.12 -2.39 -0.02 1.66 16 43 H 0.07 1.69 6.47 -2.39 -0.02 1.68 16 44 H 0.08 1.41 8.12 -2.39 -0.02 1.39 16 45 H 0.09 1.42 8.12 -2.39 -0.02 1.41 16 46 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 47 H 0.40 17.20 5.72 -92.71 -0.53 16.67 16 48 H 0.01 0.51 8.08 -2.39 -0.02 0.49 16 49 H 0.07 4.30 5.92 -2.39 -0.01 4.29 16 50 H 0.25 14.10 8.32 -92.71 -0.77 13.33 16 51 H 0.08 3.36 8.14 -2.39 -0.02 3.34 16 52 H 0.07 3.08 8.14 -2.39 -0.02 3.06 16 53 H 0.08 3.09 8.14 -2.39 -0.02 3.07 16 54 H 0.08 3.25 8.14 -2.39 -0.02 3.23 16 Total: -1.00 -64.29 423.63 -1.80 -66.09 By element: Atomic # 1 Polarization: 41.42 SS G_CDS: 0.32 Total: 41.74 kcal Atomic # 6 Polarization: 13.36 SS G_CDS: 9.69 Total: 23.05 kcal Atomic # 7 Polarization: -127.40 SS G_CDS: -13.77 Total: -141.17 kcal Atomic # 8 Polarization: -33.68 SS G_CDS: -0.06 Total: -33.75 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.04 kcal Total: -64.29 -1.80 -66.09 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574825039.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.142 kcal (2) G-P(sol) polarization free energy of solvation -64.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds