Wall clock time and date at job start Fri Apr 10 2020 14:47:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46901 * 109.47400 * 2 1 4 4 C 1.46900 * 111.00016 * 295.62926 * 3 2 1 5 5 C 1.53004 * 109.46915 * 296.54470 * 4 3 2 6 6 C 1.46901 * 111.00087 * 59.57821 * 3 2 1 7 7 C 1.53005 * 109.46823 * 77.90073 * 6 3 2 8 8 H 1.08997 * 109.46946 * 55.65214 * 7 6 3 9 9 C 1.53003 * 109.46970 * 175.64811 * 7 6 3 10 10 N 1.46493 * 109.47508 * 295.64907 * 7 6 3 11 11 C 1.34783 * 120.00024 * 152.64793 * 10 7 6 12 12 O 1.21584 * 119.99976 * 4.96667 * 11 10 7 13 13 N 1.34776 * 119.99662 * 184.96994 * 11 10 7 14 14 C 1.47080 * 120.88638 * 355.56565 * 13 11 10 15 15 C 1.53240 * 108.52318 * 231.16778 * 14 13 11 16 16 N 1.46897 * 109.34050 * 306.17129 * 15 14 13 17 17 C 1.46899 * 110.99961 * 187.25401 * 16 15 14 18 18 C 1.50705 * 109.46964 * 169.99758 * 17 16 15 19 19 H 1.07998 * 120.00024 * 359.97438 * 18 17 16 20 20 C 1.37876 * 119.99866 * 179.97438 * 18 17 16 21 21 N 1.31513 * 120.00215 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99759 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47428 * 60.00364 * 22 20 18 24 24 H 1.48508 * 109.46957 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47267 * 300.00012 * 22 20 18 26 26 C 1.46900 * 111.26929 * 63.10131 * 16 15 14 27 27 C 1.47081 * 120.87607 * 175.54882 * 13 11 10 28 28 H 1.09004 * 109.46547 * 303.59557 * 1 2 3 29 29 H 1.09001 * 109.47102 * 63.58877 * 1 2 3 30 30 H 1.08993 * 109.47189 * 183.59298 * 1 2 3 31 31 H 1.08994 * 109.47090 * 240.00002 * 2 1 3 32 32 H 1.09000 * 109.47153 * 119.99903 * 2 1 3 33 33 H 1.09000 * 109.47509 * 56.54347 * 4 3 2 34 34 H 1.08999 * 109.47470 * 176.54637 * 4 3 2 35 35 H 1.08998 * 109.46757 * 305.82641 * 5 4 3 36 36 H 1.08993 * 109.47283 * 65.82391 * 5 4 3 37 37 H 1.09001 * 109.47178 * 185.82896 * 5 4 3 38 38 H 1.08999 * 109.47365 * 317.90685 * 6 3 2 39 39 H 1.08998 * 109.47440 * 197.90497 * 6 3 2 40 40 H 1.08997 * 109.46957 * 60.00410 * 9 7 6 41 41 H 1.08999 * 109.47435 * 180.02562 * 9 7 6 42 42 H 1.08995 * 109.47103 * 300.00323 * 9 7 6 43 43 H 0.97004 * 119.99942 * 332.65337 * 10 7 6 44 44 H 1.09000 * 109.62782 * 111.45512 * 14 13 11 45 45 H 1.09007 * 109.62746 * 350.87875 * 14 13 11 46 46 H 1.09001 * 109.49149 * 186.20789 * 15 14 13 47 47 H 1.08997 * 109.48886 * 66.12935 * 15 14 13 48 48 H 1.08994 * 109.46955 * 289.99595 * 17 16 15 49 49 H 1.09000 * 109.46793 * 50.00229 * 17 16 15 50 50 H 0.96993 * 120.00190 * 180.02562 * 21 20 18 51 51 H 1.08999 * 109.49056 * 56.86287 * 26 16 15 52 52 H 1.09001 * 109.48922 * 176.93592 * 26 16 15 53 53 H 1.08996 * 109.63376 * 9.12528 * 27 13 11 54 54 H 1.08994 * 109.62707 * 248.54010 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6360 2.0791 -1.2365 5 6 2.3049 1.3980 -2.4322 6 6 1.5405 2.1128 1.1826 7 6 2.3751 1.7122 2.4008 8 1 3.4304 1.8875 2.1918 9 6 1.9485 2.5488 3.6087 10 7 2.1643 0.2919 2.6915 11 6 3.1294 -0.4207 3.3058 12 8 4.1372 0.1338 3.6996 13 7 2.9772 -1.7480 3.4835 14 6 1.7268 -2.4223 3.1027 15 6 1.2404 -3.2548 4.2937 16 7 2.3189 -4.1493 4.7349 17 6 1.8403 -5.0846 5.7615 18 6 2.8902 -6.1366 6.0113 19 1 3.8197 -6.1129 5.4620 20 6 2.6639 -7.1292 6.9411 21 7 1.5318 -7.1583 7.6097 22 14 3.9649 -8.4334 7.2502 23 1 5.2163 -7.7838 7.7164 24 1 3.4812 -9.3790 8.2882 25 1 4.2314 -9.1749 5.9915 26 6 3.4793 -3.3878 5.2162 27 6 4.0575 -2.5607 4.0630 28 1 -0.3632 0.5687 0.8561 29 1 -0.3633 0.4571 -0.9204 30 1 -0.3633 -1.0256 0.0644 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 0.5531 2.0391 -1.3546 34 1 1.9576 3.1192 -1.1842 35 1 3.3807 1.3458 -2.2655 36 1 1.9056 0.3903 -2.5465 37 1 2.1048 1.9728 -3.3365 38 1 0.4942 1.8659 1.3620 39 1 1.6368 3.1852 1.0130 40 1 0.8933 2.3734 3.8177 41 1 2.5433 2.2637 4.4765 42 1 2.1054 3.6055 3.3924 43 1 1.3301 -0.1356 2.4419 44 1 1.9082 -3.0754 2.2491 45 1 0.9735 -1.6780 2.8442 46 1 0.3759 -3.8474 3.9944 47 1 0.9611 -2.5908 5.1117 48 1 1.6440 -4.5406 6.6854 49 1 0.9223 -5.5618 5.4186 50 1 1.3728 -7.8564 8.2640 51 1 3.1688 -2.7220 6.0215 52 1 4.2386 -4.0770 5.5860 53 1 4.8452 -1.9081 4.4395 54 1 4.4629 -3.2272 3.3018 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601583230.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:47:20 Heat of formation + Delta-G solvation = -22.155375 kcal Electronic energy + Delta-G solvation = -29821.601427 eV Core-core repulsion = 26021.341904 eV Total energy + Delta-G solvation = -3800.259523 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 326.242 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.64521 -39.83834 -38.89971 -36.29489 -35.97221 -34.42162 -32.79790 -32.16902 -31.71093 -30.12714 -29.62762 -27.20615 -26.32181 -24.95488 -24.58742 -23.93731 -22.67284 -21.75544 -21.03557 -20.43427 -19.00064 -18.48404 -17.66791 -17.12381 -16.86455 -16.65188 -16.35838 -16.02631 -15.86565 -15.56174 -15.35995 -15.23119 -14.99296 -14.64609 -14.51911 -14.04410 -13.90333 -13.81384 -13.65526 -13.40278 -13.09718 -13.03609 -12.96203 -12.78675 -12.75050 -12.56075 -12.42220 -12.34614 -12.32204 -12.27067 -12.15803 -11.93847 -11.77370 -11.73015 -11.47949 -11.36128 -11.11559 -10.60771 -10.10769 -9.55788 -9.11431 -9.03478 -8.20392 -6.30121 1.42817 1.45409 1.53083 1.63220 2.15266 2.40992 2.87766 2.97632 3.11881 3.22270 3.86537 3.94841 4.02410 4.06437 4.08224 4.14090 4.25255 4.30855 4.35811 4.39917 4.42783 4.44759 4.54362 4.56229 4.65271 4.68744 4.70245 4.72672 4.79134 4.84694 4.89753 4.94759 5.01594 5.02315 5.09734 5.16022 5.17614 5.19055 5.23275 5.29411 5.30634 5.45544 5.48632 5.62336 5.64267 5.93943 6.03611 6.19527 6.22494 6.25703 6.58066 6.85176 6.95484 7.39596 7.56478 8.90559 Molecular weight = 326.24amu Principal moments of inertia in cm(-1) A = 0.021092 B = 0.002570 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.167999 B =10892.840923 C =11270.484693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.030 3.970 3 N -0.548 5.548 4 C 0.048 3.952 5 C -0.147 4.147 6 C 0.047 3.953 7 C 0.166 3.834 8 H 0.068 0.932 9 C -0.158 4.158 10 N -0.724 5.724 11 C 0.705 3.295 12 O -0.632 6.632 13 N -0.629 5.629 14 C 0.129 3.871 15 C 0.038 3.962 16 N -0.536 5.536 17 C 0.210 3.790 18 C -0.524 4.524 19 H 0.066 0.934 20 C 0.002 3.998 21 N -0.935 5.935 22 Si 0.968 3.032 23 H -0.269 1.269 24 H -0.285 1.285 25 H -0.266 1.266 26 C 0.058 3.942 27 C 0.146 3.854 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.044 0.956 34 H 0.079 0.921 35 H 0.049 0.951 36 H 0.051 0.949 37 H 0.069 0.931 38 H 0.063 0.937 39 H 0.103 0.897 40 H 0.066 0.934 41 H 0.034 0.966 42 H 0.085 0.915 43 H 0.403 0.597 44 H 0.089 0.911 45 H 0.101 0.899 46 H 0.090 0.910 47 H 0.016 0.984 48 H -0.043 1.043 49 H 0.012 0.988 50 H 0.264 0.736 51 H 0.007 0.993 52 H 0.080 0.920 53 H 0.084 0.916 54 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.505 20.138 -18.790 27.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.098 4.098 3 N -0.272 5.272 4 C -0.079 4.079 5 C -0.205 4.205 6 C -0.081 4.081 7 C 0.061 3.939 8 H 0.086 0.914 9 C -0.217 4.217 10 N -0.384 5.384 11 C 0.407 3.593 12 O -0.514 6.514 13 N -0.366 5.366 14 C 0.006 3.994 15 C -0.091 4.091 16 N -0.261 5.261 17 C 0.084 3.916 18 C -0.562 4.562 19 H 0.084 0.916 20 C -0.196 4.196 21 N -0.575 5.575 22 Si 0.792 3.208 23 H -0.194 1.194 24 H -0.210 1.210 25 H -0.191 1.191 26 C -0.072 4.072 27 C 0.022 3.978 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.062 0.938 34 H 0.097 0.903 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.088 0.912 38 H 0.081 0.919 39 H 0.121 0.879 40 H 0.085 0.915 41 H 0.053 0.947 42 H 0.104 0.896 43 H 0.243 0.757 44 H 0.107 0.893 45 H 0.119 0.881 46 H 0.109 0.891 47 H 0.034 0.966 48 H -0.026 1.026 49 H 0.030 0.970 50 H 0.073 0.927 51 H 0.025 0.975 52 H 0.098 0.902 53 H 0.102 0.898 54 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.216 20.178 -18.808 27.771 hybrid contribution -1.036 -0.742 1.405 1.897 sum -4.252 19.436 -17.403 26.433 Atomic orbital electron populations 1.22435 0.97049 1.03269 1.02410 1.22520 0.93737 0.90279 1.03237 1.62185 1.60117 1.02562 1.02306 1.22158 0.98354 0.98303 0.89106 1.21778 1.00818 1.00630 0.97273 1.22503 0.97287 0.99681 0.88675 1.20896 1.00662 0.78286 0.94081 0.91356 1.22122 1.01590 1.00716 0.97263 1.45540 1.18290 1.11305 1.63252 1.15973 0.83520 0.81083 0.78691 1.90854 1.32183 1.70398 1.57933 1.47397 1.17514 1.05609 1.66093 1.21799 0.84906 0.95773 0.96890 1.22520 0.94975 0.94778 0.96858 1.62003 1.06841 1.17321 1.39910 1.19363 0.95352 0.90119 0.86811 1.21440 1.03046 1.10630 1.21082 0.91624 1.25891 0.97839 1.00301 0.95546 1.70069 1.25912 1.35177 1.26349 0.85458 0.78900 0.78372 0.78037 1.19413 1.21030 1.19123 1.22279 0.94747 0.95050 0.95096 1.21470 0.88957 0.92361 0.95007 0.91835 0.92017 0.91108 0.90959 0.90605 0.93786 0.90299 0.93150 0.92993 0.91161 0.91926 0.87870 0.91474 0.94672 0.89643 0.75706 0.89319 0.88062 0.89142 0.96562 1.02551 0.97037 0.92711 0.97502 0.90196 0.89784 0.90227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.03 9.08 71.98 0.65 -1.38 16 2 C 0.03 0.44 5.31 86.30 0.46 0.90 16 3 N -0.55 -8.05 4.65 -896.22 -4.16 -12.22 16 4 C 0.05 0.55 5.43 86.30 0.47 1.01 16 5 C -0.15 -1.73 9.62 71.98 0.69 -1.04 16 6 C 0.05 0.59 4.60 86.30 0.40 0.99 16 7 C 0.17 3.16 2.81 45.00 0.13 3.28 16 8 H 0.07 1.73 7.58 -2.39 -0.02 1.71 16 9 C -0.16 -2.75 9.51 71.98 0.68 -2.07 16 10 N -0.72 -15.64 3.06 -457.81 -1.40 -17.04 16 11 C 0.71 21.51 8.27 179.05 1.48 22.99 16 12 O -0.63 -24.38 15.47 -3.98 -0.06 -24.44 16 13 N -0.63 -18.74 3.01 -835.92 -2.52 -21.26 16 14 C 0.13 3.18 6.55 86.35 0.57 3.74 16 15 C 0.04 1.24 5.62 86.38 0.49 1.73 16 16 N -0.54 -22.43 4.62 -899.82 -4.16 -26.59 16 17 C 0.21 10.99 4.72 85.56 0.40 11.39 16 18 C -0.52 -29.24 8.41 25.60 0.22 -29.03 16 19 H 0.07 3.57 7.13 -2.91 -0.02 3.55 16 20 C 0.00 0.13 5.46 84.65 0.46 0.59 16 21 N -0.93 -55.92 13.29 21.45 0.28 -55.63 16 22 Si 0.97 44.02 29.54 68.60 2.03 46.04 16 23 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 24 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 25 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 26 C 0.06 2.29 5.46 86.38 0.47 2.76 16 27 C 0.15 4.88 6.61 86.35 0.57 5.45 16 28 H 0.06 0.61 5.89 -2.39 -0.01 0.60 16 29 H 0.06 0.62 6.61 -2.39 -0.02 0.60 16 30 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.07 1.11 6.31 -2.39 -0.02 1.10 16 32 H 0.08 1.31 4.80 -2.39 -0.01 1.30 16 33 H 0.04 0.43 6.33 -2.39 -0.02 0.42 16 34 H 0.08 0.80 7.88 -2.39 -0.02 0.78 16 35 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.05 0.63 6.69 -2.39 -0.02 0.61 16 37 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.06 0.65 5.50 -2.39 -0.01 0.64 16 39 H 0.10 1.00 7.73 -2.39 -0.02 0.98 16 40 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.40 6.88 4.27 -92.71 -0.40 6.49 16 44 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 45 H 0.10 1.76 5.72 -2.38 -0.01 1.75 16 46 H 0.09 2.78 7.99 -2.39 -0.02 2.76 16 47 H 0.02 0.57 8.14 -2.39 -0.02 0.55 16 48 H -0.04 -2.51 8.12 -2.39 -0.02 -2.53 16 49 H 0.01 0.64 7.97 -2.39 -0.02 0.62 16 50 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 51 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 52 H 0.08 3.42 6.67 -2.39 -0.02 3.40 16 53 H 0.08 2.92 7.04 -2.39 -0.02 2.90 16 54 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 Total: -1.00 -70.47 402.35 -1.37 -71.85 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: 0.48 Total: 17.95 kcal Atomic # 6 Polarization: 13.20 SS G_CDS: 8.14 Total: 21.33 kcal Atomic # 7 Polarization: -120.79 SS G_CDS: -11.95 Total: -132.74 kcal Atomic # 8 Polarization: -24.38 SS G_CDS: -0.06 Total: -24.44 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.04 kcal Total: -70.47 -1.37 -71.85 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601583230.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.691 kcal (2) G-P(sol) polarization free energy of solvation -70.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds