Wall clock time and date at job start Fri Apr 10 2020 14:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46500 * 109.47423 * 2 1 4 4 C 1.38377 * 126.39072 * 270.14867 * 3 2 1 5 5 C 1.38696 * 133.89437 * 359.96308 * 4 3 2 6 6 C 1.37947 * 119.85642 * 180.33241 * 5 4 3 7 7 C 1.38755 * 120.45366 * 359.97438 * 6 5 4 8 8 S 1.76202 * 119.73885 * 180.02562 * 7 6 5 9 9 N 1.65606 * 107.21747 * 89.99770 * 8 7 6 10 10 O 1.42097 * 106.40250 * 203.53733 * 8 7 6 11 11 O 1.42098 * 106.40275 * 336.46041 * 8 7 6 12 12 C 1.37624 * 120.52191 * 0.03965 * 7 6 5 13 13 C 1.39837 * 119.77156 * 359.95699 * 12 7 6 14 14 N 1.35661 * 133.38139 * 179.97438 * 13 12 7 15 15 C 1.31083 * 109.63667 * 180.02562 * 14 13 12 16 16 S 1.76199 * 125.09151 * 179.97438 * 15 14 13 17 17 C 1.76195 * 99.99986 * 0.02562 * 16 15 14 18 18 H 1.08001 * 119.99996 * 0.02562 * 17 16 15 19 19 C 1.38739 * 120.00262 * 179.97438 * 17 16 15 20 20 N 1.31583 * 119.99796 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 120.00324 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47511 * 60.00297 * 21 19 17 23 23 H 1.48503 * 109.47170 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.47353 * 299.99830 * 21 19 17 25 25 H 1.09007 * 109.47320 * 300.00691 * 1 2 3 26 26 H 1.09007 * 109.46638 * 59.99949 * 1 2 3 27 27 H 1.08994 * 109.47647 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47602 * 239.99647 * 2 1 3 29 29 H 1.09007 * 109.46820 * 119.99528 * 2 1 3 30 30 H 1.07993 * 120.06856 * 0.31376 * 5 4 3 31 31 H 1.07999 * 119.77376 * 179.97438 * 6 5 4 32 32 H 0.97001 * 119.99885 * 0.02562 * 9 8 7 33 33 H 0.97001 * 120.00104 * 179.97438 * 9 8 7 34 34 H 1.08006 * 120.11522 * 180.02562 * 12 7 6 35 35 H 0.97002 * 119.99983 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2893 2.1562 -1.1139 5 6 2.2086 1.9365 -2.4810 6 6 2.5672 2.9375 -3.3598 7 6 3.0084 4.1647 -2.8858 8 16 3.4612 5.4302 -4.0251 9 7 2.0983 6.3167 -4.3401 10 8 4.3508 6.2947 -3.3320 11 8 3.8025 4.7744 -5.2386 12 6 3.0955 4.4011 -1.5328 13 6 2.7358 3.3974 -0.6280 14 7 2.7135 3.3284 0.7267 15 6 2.2890 2.1459 1.1006 16 16 2.1030 1.6181 2.7714 17 6 2.6279 3.0746 3.6126 18 1 2.9378 3.9419 3.0485 19 6 2.6422 3.1077 4.9995 20 7 2.2642 2.0512 5.6867 21 14 3.1981 4.6520 5.8913 22 1 2.3162 5.7858 5.5146 23 1 3.1220 4.4312 7.3578 24 1 4.5986 4.9665 5.5106 25 1 -0.3634 0.5140 0.8900 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3634 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8932 -0.5138 0.8901 30 1 1.8659 0.9837 -2.8566 31 1 2.5042 2.7648 -4.4240 32 1 1.2590 6.0843 -3.9128 33 1 2.1394 7.0689 -4.9512 34 1 3.4394 5.3589 -1.1711 35 1 2.2745 2.0741 6.6564 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000005083901.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:47:12 Heat of formation + Delta-G solvation = -39.034011 kcal Electronic energy + Delta-G solvation = -22668.040235 eV Core-core repulsion = 19111.503501 eV Total energy + Delta-G solvation = -3556.536734 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.050 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.01737 -38.45285 -38.17956 -36.87518 -35.99139 -34.77060 -33.98690 -32.38887 -30.62160 -30.48871 -27.81078 -25.04364 -24.76593 -23.54851 -21.73427 -20.56093 -20.01109 -19.24260 -18.33695 -18.27034 -17.83657 -17.05606 -16.98389 -16.69155 -16.59105 -15.95047 -15.56869 -15.39768 -14.85122 -14.76006 -14.29861 -14.01855 -13.38358 -13.26191 -13.18207 -13.16019 -13.14008 -13.01832 -13.01057 -12.92248 -12.72058 -12.25892 -12.06355 -11.99150 -11.54721 -11.33109 -11.29220 -11.08143 -10.85104 -10.18876 -9.41516 -8.63037 -8.56006 -6.33749 -0.56900 -0.28179 0.01194 0.68768 1.35135 1.38139 1.47730 1.61891 1.77310 2.10444 2.21368 2.47447 2.82594 2.86587 2.94708 3.28167 3.63988 3.66763 3.90811 4.06187 4.10824 4.21885 4.30629 4.35175 4.46148 4.71724 4.80105 4.89286 5.00072 5.19132 5.29881 5.32936 5.39491 5.47738 5.67979 5.94672 6.20413 6.39558 6.80953 6.93086 8.53120 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.014492 B = 0.003793 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.584589 B = 7380.353970 C = 9036.146674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.096 3.904 3 N -0.479 5.479 4 C 0.081 3.919 5 C -0.113 4.113 6 C -0.029 4.029 7 C -0.674 4.674 8 S 2.741 3.259 9 N -1.234 6.234 10 O -1.004 7.004 11 O -0.984 6.984 12 C 0.020 3.980 13 C 0.001 3.999 14 N -0.541 5.541 15 C 0.250 3.750 16 S 0.127 5.873 17 C -0.563 4.563 18 H 0.088 0.912 19 C 0.036 3.964 20 N -0.902 5.902 21 Si 0.992 3.008 22 H -0.268 1.268 23 H -0.265 1.265 24 H -0.270 1.270 25 H 0.042 0.958 26 H 0.065 0.935 27 H 0.109 0.891 28 H 0.124 0.876 29 H 0.093 0.907 30 H 0.167 0.833 31 H 0.179 0.821 32 H 0.429 0.571 33 H 0.430 0.570 34 H 0.138 0.862 35 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.613 -1.343 -18.974 19.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.024 4.024 3 N -0.171 5.171 4 C -0.033 4.033 5 C -0.135 4.135 6 C -0.052 4.052 7 C -0.764 4.764 8 S 2.830 3.170 9 N -0.914 5.914 10 O -0.993 6.993 11 O -0.974 6.974 12 C -0.002 4.002 13 C -0.121 4.121 14 N -0.266 5.266 15 C -0.121 4.121 16 S 0.362 5.638 17 C -0.711 4.711 18 H 0.106 0.894 19 C -0.171 4.171 20 N -0.538 5.538 21 Si 0.813 3.187 22 H -0.192 1.192 23 H -0.189 1.189 24 H -0.195 1.195 25 H 0.061 0.939 26 H 0.084 0.916 27 H 0.127 0.873 28 H 0.142 0.858 29 H 0.111 0.889 30 H 0.184 0.816 31 H 0.197 0.803 32 H 0.259 0.741 33 H 0.263 0.737 34 H 0.156 0.844 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.831 -1.975 -17.979 18.721 hybrid contribution -0.148 1.219 0.627 1.378 sum -4.979 -0.756 -17.352 18.068 Atomic orbital electron populations 1.22132 0.92847 1.04766 1.02314 1.22221 0.96861 0.77281 1.06063 1.45765 1.54666 1.13874 1.02827 1.19564 1.01182 0.91900 0.90659 1.20356 1.04247 1.02144 0.86758 1.20896 0.93403 0.89722 1.01131 1.30227 1.21620 1.16681 1.07833 1.00183 0.72260 0.72370 0.72229 1.52646 1.27510 1.48360 1.62873 1.93567 1.64071 1.66258 1.75388 1.93558 1.82544 1.76175 1.45091 1.20067 0.92311 0.97439 0.90415 1.19723 1.05872 0.95792 0.90685 1.71005 1.25561 1.19090 1.10951 1.26844 0.98346 0.89369 0.97503 1.83090 1.78157 1.20165 0.82385 1.23360 1.52274 1.01267 0.94180 0.89426 1.25884 0.93738 1.00909 0.96595 1.69963 1.44803 1.30322 1.08688 0.85096 0.79029 0.77458 0.77070 1.19244 1.18934 1.19517 0.93873 0.91597 0.87268 0.85774 0.88862 0.81557 0.80332 0.74133 0.73713 0.84414 0.90931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.37 10.24 71.98 0.74 -2.63 16 2 C 0.10 2.32 6.66 86.38 0.58 2.89 16 3 N -0.48 -16.74 2.83 -515.51 -1.46 -18.20 16 4 C 0.08 2.71 6.87 38.79 0.27 2.98 16 5 C -0.11 -2.65 10.04 22.31 0.22 -2.42 16 6 C -0.03 -0.63 9.50 22.32 0.21 -0.42 16 7 C -0.67 -16.99 5.94 22.25 0.13 -16.86 16 8 S 2.74 58.57 6.27 -56.49 -0.35 58.22 16 9 N -1.23 -14.99 9.55 37.02 0.35 -14.64 16 10 O -1.00 -29.95 17.25 -128.00 -2.21 -32.15 16 11 O -0.98 -24.41 17.26 -128.00 -2.21 -26.62 16 12 C 0.02 0.68 9.56 22.51 0.22 0.90 16 13 C 0.00 0.04 7.22 39.51 0.29 0.32 16 14 N -0.54 -26.37 9.96 -188.29 -1.88 -28.25 16 15 C 0.25 11.35 7.92 179.55 1.42 12.78 16 16 S 0.13 6.25 21.13 -56.49 -1.19 5.06 16 17 C -0.56 -31.83 9.35 67.94 0.64 -31.20 16 18 H 0.09 5.19 6.85 -2.91 -0.02 5.17 16 19 C 0.04 1.93 5.49 84.85 0.47 2.39 16 20 N -0.90 -49.87 13.22 21.63 0.29 -49.59 16 21 Si 0.99 43.48 29.55 68.60 2.03 45.51 16 22 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 23 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 24 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 25 H 0.04 1.15 8.14 -2.38 -0.02 1.13 16 26 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 27 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.12 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.09 2.38 7.68 -2.38 -0.02 2.36 16 30 H 0.17 2.51 8.06 -2.91 -0.02 2.48 16 31 H 0.18 2.56 7.59 -2.91 -0.02 2.54 16 32 H 0.43 3.57 8.92 -96.74 -0.86 2.71 16 33 H 0.43 3.43 8.96 -96.74 -0.87 2.56 16 34 H 0.14 4.63 7.59 -2.91 -0.02 4.60 16 35 H 0.28 14.40 8.31 -92.71 -0.77 13.63 16 Total: -1.00 -79.94 333.67 -2.03 -81.97 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -0.56 Total: 9.96 kcal Atomic # 6 Polarization: -36.44 SS G_CDS: 5.17 Total: -31.27 kcal Atomic # 7 Polarization: -107.97 SS G_CDS: -2.70 Total: -110.67 kcal Atomic # 8 Polarization: -54.36 SS G_CDS: -4.42 Total: -58.77 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Atomic # 16 Polarization: 64.82 SS G_CDS: -1.55 Total: 63.27 kcal Total: -79.94 -2.03 -81.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005083901.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.936 kcal (2) G-P(sol) polarization free energy of solvation -79.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds