Wall clock time and date at job start Fri Apr 10 2020 14:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86809 * 119.99907 * 2 1 4 4 H 1.48496 * 109.47200 * 270.00310 * 3 2 1 5 5 H 1.48501 * 109.46971 * 30.00509 * 3 2 1 6 6 H 1.48500 * 109.46909 * 150.00436 * 3 2 1 7 7 C 1.38794 * 120.00428 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00786 * 179.97438 * 7 2 1 9 9 S 1.76209 * 119.99762 * 359.97438 * 7 2 1 10 10 C 1.80994 * 100.00093 * 179.97438 * 9 7 2 11 11 C 1.50694 * 109.47061 * 179.97438 * 10 9 7 12 12 O 1.21274 * 120.00216 * 0.02562 * 11 10 9 13 13 N 1.34783 * 119.99914 * 180.02562 * 11 10 9 14 14 C 1.46504 * 120.00012 * 180.02562 * 13 11 10 15 15 H 1.08997 * 108.61878 * 36.94373 * 14 13 11 16 16 C 1.51873 * 108.66471 * 154.99831 * 14 13 11 17 17 C 1.53526 * 108.95860 * 181.48443 * 16 14 13 18 18 S 1.81608 * 107.31720 * 287.42043 * 17 16 14 19 19 C 1.76466 * 102.63422 * 46.41409 * 18 17 16 20 20 C 1.39603 * 117.69416 * 167.35506 * 19 18 17 21 21 C 1.37750 * 120.66533 * 178.56114 * 20 19 18 22 22 C 1.38520 * 119.48527 * 0.04623 * 21 20 19 23 23 F 1.35102 * 120.02362 * 180.38410 * 22 21 20 24 24 C 1.37935 * 119.95470 * 0.36131 * 22 21 20 25 25 C 1.38149 * 122.29477 * 346.61944 * 19 18 17 26 26 H 0.96998 * 120.00018 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.46851 * 60.00128 * 10 9 7 28 28 H 1.09002 * 109.47423 * 300.00416 * 10 9 7 29 29 H 0.96995 * 120.00242 * 359.97438 * 13 11 10 30 30 H 1.08998 * 109.55685 * 61.64188 * 16 14 13 31 31 H 1.09003 * 109.64389 * 301.37535 * 16 14 13 32 32 H 1.09005 * 109.88530 * 46.87078 * 17 16 14 33 33 H 1.09004 * 109.88843 * 167.96195 * 17 16 14 34 34 H 1.07998 * 119.66657 * 358.54666 * 20 19 18 35 35 H 1.08004 * 120.26101 * 180.02562 * 21 20 19 36 36 H 1.08003 * 119.48084 * 179.90959 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6178 0.0000 4 1 2.4978 2.0466 -1.4000 5 1 1.4478 2.6527 0.7002 6 1 3.5479 1.4402 0.7000 7 6 2.0104 -1.2019 -0.0005 8 1 3.0904 -1.2020 -0.0010 9 16 1.1294 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0021 11 6 1.9875 -5.3026 -0.0017 12 8 0.7913 -5.5022 -0.0009 13 7 2.8443 -6.3430 -0.0022 14 6 2.3306 -7.7151 -0.0024 15 1 1.4352 -7.7513 -0.6229 16 6 3.3812 -8.6274 -0.6110 17 6 2.8349 -10.0617 -0.6487 18 16 2.8286 -10.6827 1.0579 19 6 2.1105 -9.3425 1.9537 20 6 1.7061 -9.5834 3.2680 21 6 1.1653 -8.5734 4.0329 22 6 1.0220 -7.3078 3.4884 23 9 0.5001 -6.3074 4.2313 24 6 1.4131 -7.0695 2.1873 25 6 1.9563 -8.0851 1.4028 26 1 -0.4850 0.8400 0.0004 27 1 3.1252 -3.7317 0.8875 28 1 3.1239 -3.7309 -0.8925 29 1 3.8010 -6.1835 -0.0032 30 1 4.2861 -8.5974 -0.0042 31 1 3.6102 -8.2975 -1.6244 32 1 1.8203 -10.0616 -1.0470 33 1 3.4775 -10.6870 -1.2685 34 1 1.8183 -10.5715 3.6892 35 1 0.8550 -8.7669 5.0491 36 1 1.2966 -6.0802 1.7700 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000032820975.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:47:33 Heat of formation + Delta-G solvation = -71.631414 kcal Electronic energy + Delta-G solvation = -22633.447827 eV Core-core repulsion = 19055.577602 eV Total energy + Delta-G solvation = -3577.870225 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 327.050 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.98212 -41.68060 -39.71015 -37.29281 -34.60898 -34.15282 -32.20227 -31.41811 -30.79287 -27.77357 -27.04118 -24.39853 -23.99639 -22.03268 -21.82893 -19.87468 -19.06484 -18.26131 -18.02972 -17.92270 -17.15153 -16.89796 -16.70211 -16.58019 -16.41855 -15.92266 -15.18186 -15.03231 -14.75221 -14.60187 -14.50538 -14.24223 -13.98357 -13.78674 -13.71504 -13.38206 -13.19241 -12.90788 -12.64890 -12.43359 -12.37277 -12.10477 -11.75569 -11.17111 -11.15072 -11.04949 -10.55515 -10.40042 -10.31036 -10.04105 -8.69299 -8.36921 -8.36856 -6.15175 -0.14278 0.05067 0.53260 1.22959 1.32905 1.40938 1.43849 1.46513 1.54824 2.08372 2.24947 2.41116 2.97569 3.11139 3.27158 3.42801 3.49958 3.75453 3.78508 3.91222 4.01036 4.18425 4.23057 4.24514 4.40371 4.45771 4.57497 4.60791 4.73894 4.83798 4.94601 5.02153 5.07745 5.10987 5.32663 5.39680 5.70243 6.17495 6.36448 7.04573 7.10144 8.72300 Molecular weight = 327.05amu Principal moments of inertia in cm(-1) A = 0.019440 B = 0.003193 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.015601 B = 8765.861187 C = 9786.121179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.014 3.986 3 Si 0.998 3.002 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.258 1.258 7 C -0.547 4.547 8 H 0.083 0.917 9 S -0.148 6.148 10 C -0.132 4.132 11 C 0.537 3.463 12 O -0.552 6.552 13 N -0.707 5.707 14 C 0.184 3.816 15 H 0.085 0.915 16 C -0.119 4.119 17 C -0.100 4.100 18 S -0.103 6.103 19 C -0.088 4.088 20 C -0.074 4.074 21 C -0.129 4.129 22 C 0.066 3.934 23 F -0.154 7.154 24 C -0.158 4.158 25 C -0.077 4.077 26 H 0.271 0.729 27 H 0.106 0.894 28 H 0.116 0.884 29 H 0.420 0.580 30 H 0.099 0.901 31 H 0.119 0.881 32 H 0.098 0.902 33 H 0.152 0.848 34 H 0.168 0.832 35 H 0.166 0.834 36 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.721 -24.404 1.231 27.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.820 3.180 4 H -0.191 1.191 5 H -0.204 1.204 6 H -0.182 1.182 7 C -0.695 4.695 8 H 0.101 0.899 9 S 0.079 5.921 10 C -0.283 4.283 11 C 0.323 3.677 12 O -0.430 6.430 13 N -0.360 5.360 14 C 0.079 3.921 15 H 0.103 0.897 16 C -0.158 4.158 17 C -0.248 4.248 18 S 0.139 5.861 19 C -0.201 4.201 20 C -0.097 4.097 21 C -0.149 4.149 22 C 0.044 3.956 23 F -0.133 7.133 24 C -0.178 4.178 25 C -0.084 4.084 26 H 0.080 0.920 27 H 0.124 0.876 28 H 0.134 0.866 29 H 0.258 0.742 30 H 0.117 0.883 31 H 0.137 0.863 32 H 0.116 0.884 33 H 0.170 0.830 34 H 0.185 0.815 35 H 0.183 0.817 36 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 10.020 -25.744 1.530 27.667 hybrid contribution 0.869 3.268 -0.037 3.382 sum 10.889 -22.476 1.493 25.019 Atomic orbital electron populations 1.70182 1.07991 1.28631 1.47962 1.26128 0.95951 1.03337 0.93691 0.84957 0.78182 0.76002 0.78874 1.19110 1.20395 1.18222 1.23205 0.95358 0.91995 1.58951 0.89870 1.85596 1.10224 0.99217 1.97056 1.23394 1.03805 0.94197 1.06931 1.20050 0.86387 0.86739 0.74483 1.90727 1.17203 1.85869 1.49239 1.45843 1.10594 1.04032 1.75578 1.19610 0.99315 0.81910 0.91293 0.89740 1.21860 0.97396 0.92257 1.04312 1.23911 1.07114 0.98975 0.94817 1.85449 1.76052 1.20075 1.04486 1.21628 1.03841 0.96039 0.98627 1.21089 0.96740 1.00183 0.91661 1.21331 1.01152 0.90092 1.02357 1.17997 1.00662 0.86495 0.90424 1.91482 1.84654 1.60768 1.76404 1.21851 1.00413 1.02080 0.93482 1.19897 1.00111 0.91844 0.96562 0.91990 0.87602 0.86604 0.74151 0.88254 0.86320 0.88387 0.83017 0.81478 0.81688 0.85914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.33 13.22 21.65 0.29 -56.04 16 2 C 0.01 0.78 5.49 84.86 0.47 1.25 16 3 Si 1.00 43.73 29.55 68.60 2.03 45.76 16 4 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 5 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 6 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 7 C -0.55 -31.28 9.50 67.95 0.65 -30.63 16 8 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 9 S -0.15 -8.20 20.57 -56.49 -1.16 -9.36 16 10 C -0.13 -5.14 6.16 71.23 0.44 -4.70 16 11 C 0.54 19.03 5.97 87.65 0.52 19.55 16 12 O -0.55 -24.66 13.59 -3.01 -0.04 -24.70 16 13 N -0.71 -16.72 4.75 -448.86 -2.13 -18.86 16 14 C 0.18 3.91 2.36 43.67 0.10 4.01 16 15 H 0.08 2.16 7.59 -2.39 -0.02 2.14 16 16 C -0.12 -1.32 5.23 30.40 0.16 -1.16 16 17 C -0.10 -0.94 6.52 72.16 0.47 -0.47 16 18 S -0.10 -1.46 21.99 -56.49 -1.24 -2.71 16 19 C -0.09 -1.82 6.05 22.58 0.14 -1.69 16 20 C -0.07 -1.41 9.65 22.48 0.22 -1.19 16 21 C -0.13 -2.90 10.04 22.22 0.22 -2.67 16 22 C 0.07 2.04 7.28 22.27 0.16 2.21 16 23 F -0.15 -5.54 17.27 44.97 0.78 -4.76 16 24 C -0.16 -5.17 8.67 22.47 0.19 -4.98 16 25 C -0.08 -1.94 5.64 -19.82 -0.11 -2.05 16 26 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 27 H 0.11 3.80 8.14 -2.39 -0.02 3.78 16 28 H 0.12 3.95 8.14 -2.39 -0.02 3.93 16 29 H 0.42 6.91 8.57 -92.71 -0.79 6.11 16 30 H 0.10 0.94 8.03 -2.39 -0.02 0.93 16 31 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.10 1.00 8.08 -2.38 -0.02 0.98 16 33 H 0.15 0.54 8.14 -2.38 -0.02 0.52 16 34 H 0.17 2.12 8.05 -2.91 -0.02 2.10 16 35 H 0.17 2.74 8.06 -2.91 -0.02 2.71 16 36 H 0.12 4.88 3.84 -2.91 -0.01 4.87 16 Total: -1.00 -79.16 331.73 2.48 -76.68 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: 0.34 Total: 16.51 kcal Atomic # 6 Polarization: -26.15 SS G_CDS: 3.63 Total: -22.52 kcal Atomic # 7 Polarization: -73.05 SS G_CDS: -1.85 Total: -74.90 kcal Atomic # 8 Polarization: -24.66 SS G_CDS: -0.04 Total: -24.70 kcal Atomic # 9 Polarization: -5.54 SS G_CDS: 0.78 Total: -4.76 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Atomic # 16 Polarization: -9.67 SS G_CDS: -2.40 Total: -12.07 kcal Total: -79.16 2.48 -76.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032820975.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.051 kcal (2) G-P(sol) polarization free energy of solvation -79.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds