Wall clock time and date at job start Fri Apr 10 2020 14:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.27936 * 1 3 3 Si 1.86796 * 120.00251 * 2 1 4 4 H 1.48498 * 109.47116 * 359.97438 * 3 2 1 5 5 H 1.48499 * 109.47551 * 119.99664 * 3 2 1 6 6 H 1.48500 * 109.47429 * 239.99988 * 3 2 1 7 7 C 1.50700 * 119.99952 * 179.97438 * 2 1 3 8 8 C 1.53297 * 109.68416 * 59.89486 * 7 2 1 9 9 O 1.42955 * 109.22545 * 187.97563 * 8 7 2 10 10 C 1.42959 * 114.16934 * 62.57847 * 9 8 7 11 11 C 1.53297 * 109.22579 * 297.42231 * 10 9 8 12 12 N 1.47149 * 108.38433 * 52.29632 * 11 10 9 13 13 S 1.65597 * 120.98069 * 129.44320 * 12 11 10 14 14 O 1.42100 * 106.40128 * 57.25942 * 13 12 11 15 15 O 1.42107 * 106.40347 * 190.17315 * 13 12 11 16 16 C 1.76195 * 107.22145 * 303.71524 * 13 12 11 17 17 C 1.38280 * 119.98653 * 113.52475 * 16 13 12 18 18 C 1.38208 * 120.14476 * 179.97438 * 17 16 13 19 19 C 1.38282 * 120.14448 * 0.02562 * 18 17 16 20 20 C 1.38504 * 120.02593 * 359.95504 * 19 18 17 21 21 C 1.38502 * 119.98412 * 293.24934 * 16 13 12 22 22 O 1.36496 * 131.54181 * 0.56783 * 21 16 13 23 23 C 1.43985 * 105.55133 * 162.31864 * 22 21 16 24 24 O 1.36501 * 131.53659 * 180.02562 * 20 19 18 25 25 H 0.96999 * 120.00468 * 229.01645 * 1 2 3 26 26 H 1.09005 * 109.68208 * 180.45044 * 7 2 1 27 27 H 1.09005 * 109.51074 * 307.90083 * 8 7 2 28 28 H 1.09003 * 109.50971 * 68.04561 * 8 7 2 29 29 H 1.09000 * 109.51550 * 177.49356 * 10 9 8 30 30 H 1.09003 * 109.55532 * 57.36852 * 10 9 8 31 31 H 1.09002 * 109.68139 * 292.57758 * 11 10 9 32 32 H 1.08998 * 109.68487 * 172.02435 * 11 10 9 33 33 H 1.07997 * 119.92750 * 0.02562 * 17 16 13 34 34 H 1.08004 * 119.92708 * 179.97438 * 18 17 16 35 35 H 1.07996 * 119.98532 * 179.97438 * 19 18 17 36 36 H 1.08999 * 110.57267 * 268.36220 * 23 22 21 37 37 H 1.09002 * 110.57506 * 145.49036 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2794 0.0000 0.0000 3 14 2.2134 1.6177 0.0000 4 1 1.2485 2.7464 -0.0006 5 1 3.0671 1.6964 1.2125 6 1 3.0672 1.6964 -1.2125 7 6 2.0328 -1.3051 0.0006 8 6 1.6640 -2.1148 -1.2477 9 8 2.2354 -3.4214 -1.1471 10 6 1.7479 -4.1900 -0.0447 11 6 2.1210 -3.4867 1.2653 12 7 1.6633 -2.0903 1.1890 13 16 0.7583 -1.4224 2.4044 14 8 1.5240 -1.5548 3.5940 15 8 0.2909 -0.1723 1.9161 16 6 -0.6657 -2.4388 2.6134 17 6 -0.8362 -3.1575 3.7824 18 6 -1.9522 -3.9554 3.9501 19 6 -2.9029 -4.0388 2.9493 20 6 -2.7388 -3.3215 1.7760 21 6 -1.6166 -2.5131 1.6091 22 8 -1.6845 -1.9207 0.3813 23 6 -2.6534 -2.6834 -0.3622 24 8 -3.5131 -3.2294 0.6556 25 1 -0.4851 -0.5509 0.6341 26 1 3.1052 -1.1099 0.0086 27 1 0.5795 -2.1964 -1.3215 28 1 2.0533 -1.6144 -2.1344 29 1 2.1976 -5.1827 -0.0659 30 1 0.6638 -4.2800 -0.1136 31 1 3.2024 -3.5116 1.4003 32 1 1.6345 -3.9874 2.1023 33 1 -0.0962 -3.0945 4.5664 34 1 -2.0817 -4.5155 4.8644 35 1 -3.7737 -4.6634 3.0829 36 1 -2.1654 -3.4825 -0.9201 37 1 -3.2176 -2.0357 -1.0332 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000548993073.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:48:11 Heat of formation + Delta-G solvation = -19.121409 kcal Electronic energy + Delta-G solvation = -28965.498557 eV Core-core repulsion = 24921.123937 eV Total energy + Delta-G solvation = -4044.374620 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.078 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.66391 -40.91529 -39.50620 -39.17094 -37.77478 -37.37281 -36.60717 -34.87025 -32.48992 -31.94926 -31.41842 -28.49406 -27.25491 -26.11724 -24.89856 -24.46175 -23.14706 -22.15977 -20.33206 -19.58875 -19.45724 -19.29237 -18.73136 -17.99559 -17.72370 -17.31751 -17.19622 -16.60552 -16.52481 -16.19498 -16.07185 -16.00113 -15.58694 -15.29351 -15.06372 -14.87120 -14.44765 -14.37502 -14.20077 -13.86854 -13.65029 -13.48411 -13.42387 -13.26639 -12.96155 -12.47953 -12.44422 -12.34179 -12.17460 -11.90825 -11.81613 -11.58705 -10.76177 -10.47088 -10.05935 -9.53039 -9.08776 -1.10091 -0.67983 -0.29702 0.58029 1.19904 1.49647 1.51526 1.78123 1.91770 1.95828 2.00691 2.17754 2.46618 2.63975 2.90195 3.14880 3.28891 3.36135 3.47251 3.57842 3.70801 3.75927 3.76426 3.84311 3.86242 3.93006 3.99936 4.02643 4.27106 4.30362 4.38624 4.42206 4.50609 4.64239 4.68621 4.80857 4.84144 4.95104 5.06565 5.52757 5.62084 5.89369 7.39963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.056 4.056 3 Si 1.063 2.937 4 H -0.243 1.243 5 H -0.248 1.248 6 H -0.255 1.255 7 C 0.096 3.904 8 C 0.066 3.934 9 O -0.368 6.368 10 C 0.048 3.952 11 C 0.086 3.914 12 N -0.992 5.992 13 S 2.661 3.339 14 O -0.938 6.938 15 O -0.931 6.931 16 C -0.663 4.663 17 C -0.020 4.020 18 C -0.121 4.121 19 C -0.044 4.044 20 C 0.020 3.980 21 C 0.123 3.877 22 O -0.301 6.301 23 C 0.213 3.787 24 O -0.298 6.298 25 H 0.367 0.633 26 H 0.105 0.895 27 H 0.055 0.945 28 H 0.116 0.884 29 H 0.112 0.888 30 H 0.049 0.951 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.161 0.839 34 H 0.154 0.846 35 H 0.149 0.851 36 H 0.092 0.908 37 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.037 -5.210 -0.581 5.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.240 5.240 2 C -0.301 4.301 3 Si 0.877 3.123 4 H -0.166 1.166 5 H -0.171 1.171 6 H -0.179 1.179 7 C -0.013 4.013 8 C -0.014 4.014 9 O -0.285 6.285 10 C -0.030 4.030 11 C -0.039 4.039 12 N -0.834 5.834 13 S 2.755 3.245 14 O -0.928 6.928 15 O -0.916 6.916 16 C -0.750 4.750 17 C -0.039 4.039 18 C -0.140 4.140 19 C -0.063 4.063 20 C -0.025 4.025 21 C 0.076 3.924 22 O -0.216 6.216 23 C 0.102 3.898 24 O -0.214 6.214 25 H 0.216 0.784 26 H 0.123 0.877 27 H 0.073 0.927 28 H 0.134 0.866 29 H 0.130 0.870 30 H 0.068 0.932 31 H 0.113 0.887 32 H 0.108 0.892 33 H 0.178 0.822 34 H 0.172 0.828 35 H 0.166 0.834 36 H 0.110 0.890 37 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -0.226 -3.253 -0.768 3.350 hybrid contribution -1.065 -2.070 0.371 2.357 sum -1.291 -5.323 -0.397 5.491 Atomic orbital electron populations 1.67831 1.07866 1.47946 1.00385 1.31380 0.96407 1.02621 0.99654 0.83775 0.76128 0.71989 0.80434 1.16552 1.17143 1.17939 1.22701 1.02527 0.90896 0.85185 1.22919 0.98270 0.83157 0.97005 1.88027 1.66825 1.26086 1.47594 1.22950 0.98937 0.95422 0.85717 1.22216 1.02521 0.79971 0.99200 1.57837 1.67493 1.21968 1.36114 1.03317 0.73666 0.74792 0.72714 1.93586 1.68288 1.85932 1.44982 1.93852 1.79854 1.41799 1.76082 1.29726 1.20002 1.23884 1.01360 1.20903 0.97936 0.91249 0.93811 1.21175 0.93526 0.99978 0.99332 1.20529 1.00167 0.95983 0.89576 1.19801 0.90526 1.00412 0.91750 1.19085 0.94701 0.91604 0.86999 1.87366 1.60601 1.51532 1.22112 1.25875 0.82301 0.92883 0.88732 1.87459 1.34280 1.80987 1.18683 0.78432 0.87687 0.92655 0.86586 0.87036 0.93220 0.88696 0.89185 0.82195 0.82824 0.83353 0.89005 0.83852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.59 -2.43 11.34 56.22 0.64 -1.79 16 2 C -0.06 -0.13 2.62 -13.90 -0.04 -0.17 16 3 Si 1.06 1.51 29.33 -169.99 -4.99 -3.48 16 4 H -0.24 -0.73 7.11 56.52 0.40 -0.33 16 5 H -0.25 -0.33 7.11 56.52 0.40 0.07 16 6 H -0.26 0.01 7.11 56.52 0.40 0.41 16 7 C 0.10 0.04 3.22 -68.57 -0.22 -0.18 16 8 C 0.07 -0.02 6.25 37.31 0.23 0.22 16 9 O -0.37 -0.11 10.74 -35.23 -0.38 -0.49 16 10 C 0.05 -0.09 6.98 37.31 0.26 0.17 16 11 C 0.09 -0.15 6.62 -3.53 -0.02 -0.17 16 12 N -0.99 -0.60 3.33 -107.25 -0.36 -0.96 16 13 S 2.66 6.91 4.91 -107.50 -0.53 6.38 16 14 O -0.94 -4.09 16.92 -57.17 -0.97 -5.06 16 15 O -0.93 -4.36 10.14 -57.17 -0.58 -4.94 16 16 C -0.66 -0.78 5.51 -39.47 -0.22 -1.00 16 17 C -0.02 0.01 9.54 -39.58 -0.38 -0.37 16 18 C -0.12 0.26 10.04 -39.58 -0.40 -0.13 16 19 C -0.04 0.05 10.06 -39.47 -0.40 -0.34 16 20 C 0.02 0.02 7.15 -39.08 -0.28 -0.26 16 21 C 0.12 0.19 6.65 -39.08 -0.26 -0.07 16 22 O -0.30 -0.43 7.96 -45.67 -0.36 -0.80 16 23 C 0.21 -0.27 8.89 101.05 0.90 0.63 16 24 O -0.30 -0.28 11.40 -45.69 -0.52 -0.80 16 25 H 0.37 1.49 1.76 -43.22 -0.08 1.42 16 26 H 0.11 -0.16 7.52 -51.93 -0.39 -0.55 16 27 H 0.06 0.00 7.86 -51.93 -0.41 -0.41 16 28 H 0.12 -0.21 8.14 -51.93 -0.42 -0.63 16 29 H 0.11 -0.42 8.14 -51.93 -0.42 -0.84 16 30 H 0.05 -0.10 8.14 -51.93 -0.42 -0.53 16 31 H 0.09 -0.24 8.14 -51.93 -0.42 -0.66 16 32 H 0.09 -0.31 7.69 -51.93 -0.40 -0.71 16 33 H 0.16 -0.32 7.33 -52.49 -0.38 -0.70 16 34 H 0.15 -0.79 8.06 -52.48 -0.42 -1.21 16 35 H 0.15 -0.51 8.06 -52.49 -0.42 -0.94 16 36 H 0.09 -0.33 8.14 -51.93 -0.42 -0.75 16 37 H 0.14 -0.49 8.14 -51.93 -0.42 -0.92 16 LS Contribution 308.08 15.07 4.64 4.64 Total: 0.00 -8.19 308.08 -8.06 -16.24 By element: Atomic # 1 Polarization: -3.43 SS G_CDS: -3.84 Total: -7.27 kcal Atomic # 6 Polarization: -0.86 SS G_CDS: -0.82 Total: -1.68 kcal Atomic # 7 Polarization: -3.03 SS G_CDS: 0.28 Total: -2.75 kcal Atomic # 8 Polarization: -9.28 SS G_CDS: -2.81 Total: -12.09 kcal Atomic # 14 Polarization: 1.51 SS G_CDS: -4.99 Total: -3.48 kcal Atomic # 16 Polarization: 6.91 SS G_CDS: -0.53 Total: 6.38 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -8.19 -8.06 -16.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548993073.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.879 kcal (2) G-P(sol) polarization free energy of solvation -8.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds