Wall clock time and date at job start Fri Apr 10 2020 14:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.27936 * 1 3 3 Si 1.86796 * 120.00251 * 2 1 4 4 H 1.48498 * 109.47116 * 359.97438 * 3 2 1 5 5 H 1.48499 * 109.47551 * 119.99664 * 3 2 1 6 6 H 1.48500 * 109.47429 * 239.99988 * 3 2 1 7 7 C 1.50700 * 119.99952 * 179.97438 * 2 1 3 8 8 C 1.53297 * 109.68416 * 59.89486 * 7 2 1 9 9 O 1.42955 * 109.22545 * 187.97563 * 8 7 2 10 10 C 1.42959 * 114.16934 * 62.57847 * 9 8 7 11 11 C 1.53297 * 109.22579 * 297.42231 * 10 9 8 12 12 N 1.47149 * 108.38433 * 52.29632 * 11 10 9 13 13 S 1.65597 * 120.98069 * 129.44320 * 12 11 10 14 14 O 1.42100 * 106.40128 * 57.25942 * 13 12 11 15 15 O 1.42107 * 106.40347 * 190.17315 * 13 12 11 16 16 C 1.76195 * 107.22145 * 303.71524 * 13 12 11 17 17 C 1.38280 * 119.98653 * 113.52475 * 16 13 12 18 18 C 1.38208 * 120.14476 * 179.97438 * 17 16 13 19 19 C 1.38282 * 120.14448 * 0.02562 * 18 17 16 20 20 C 1.38504 * 120.02593 * 359.95504 * 19 18 17 21 21 C 1.38502 * 119.98412 * 293.24934 * 16 13 12 22 22 O 1.36496 * 131.54181 * 0.56783 * 21 16 13 23 23 C 1.43985 * 105.55133 * 162.31864 * 22 21 16 24 24 O 1.36501 * 131.53659 * 180.02562 * 20 19 18 25 25 H 0.96999 * 120.00468 * 229.01645 * 1 2 3 26 26 H 1.09005 * 109.68208 * 180.45044 * 7 2 1 27 27 H 1.09005 * 109.51074 * 307.90083 * 8 7 2 28 28 H 1.09003 * 109.50971 * 68.04561 * 8 7 2 29 29 H 1.09000 * 109.51550 * 177.49356 * 10 9 8 30 30 H 1.09003 * 109.55532 * 57.36852 * 10 9 8 31 31 H 1.09002 * 109.68139 * 292.57758 * 11 10 9 32 32 H 1.08998 * 109.68487 * 172.02435 * 11 10 9 33 33 H 1.07997 * 119.92750 * 0.02562 * 17 16 13 34 34 H 1.08004 * 119.92708 * 179.97438 * 18 17 16 35 35 H 1.07996 * 119.98532 * 179.97438 * 19 18 17 36 36 H 1.08999 * 110.57267 * 268.36220 * 23 22 21 37 37 H 1.09002 * 110.57506 * 145.49036 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2794 0.0000 0.0000 3 14 2.2134 1.6177 0.0000 4 1 1.2485 2.7464 -0.0006 5 1 3.0671 1.6964 1.2125 6 1 3.0672 1.6964 -1.2125 7 6 2.0328 -1.3051 0.0006 8 6 1.6640 -2.1148 -1.2477 9 8 2.2354 -3.4214 -1.1471 10 6 1.7479 -4.1900 -0.0447 11 6 2.1210 -3.4867 1.2653 12 7 1.6633 -2.0903 1.1890 13 16 0.7583 -1.4224 2.4044 14 8 1.5240 -1.5548 3.5940 15 8 0.2909 -0.1723 1.9161 16 6 -0.6657 -2.4388 2.6134 17 6 -0.8362 -3.1575 3.7824 18 6 -1.9522 -3.9554 3.9501 19 6 -2.9029 -4.0388 2.9493 20 6 -2.7388 -3.3215 1.7760 21 6 -1.6166 -2.5131 1.6091 22 8 -1.6845 -1.9207 0.3813 23 6 -2.6534 -2.6834 -0.3622 24 8 -3.5131 -3.2294 0.6556 25 1 -0.4851 -0.5509 0.6341 26 1 3.1052 -1.1099 0.0086 27 1 0.5795 -2.1964 -1.3215 28 1 2.0533 -1.6144 -2.1344 29 1 2.1976 -5.1827 -0.0659 30 1 0.6638 -4.2800 -0.1136 31 1 3.2024 -3.5116 1.4003 32 1 1.6345 -3.9874 2.1023 33 1 -0.0962 -3.0945 4.5664 34 1 -2.0817 -4.5155 4.8644 35 1 -3.7737 -4.6634 3.0829 36 1 -2.1654 -3.4825 -0.9201 37 1 -3.2176 -2.0357 -1.0332 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000548993073.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:48:10 Heat of formation + Delta-G solvation = -20.254461 kcal Electronic energy + Delta-G solvation = -28965.547690 eV Core-core repulsion = 24921.123937 eV Total energy + Delta-G solvation = -4044.423753 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 328.078 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.59702 -40.91130 -39.58457 -39.12968 -37.74308 -37.57129 -36.66800 -34.91419 -32.43626 -31.91552 -31.32559 -28.45629 -27.14129 -26.08258 -24.85089 -24.39068 -23.08941 -22.23879 -20.36408 -19.58426 -19.42771 -19.34989 -18.71115 -17.95503 -17.70833 -17.33938 -17.12919 -16.58905 -16.51695 -16.27957 -16.03694 -15.91781 -15.53807 -15.28285 -15.02021 -14.92355 -14.41446 -14.36182 -14.19296 -13.83723 -13.69170 -13.56793 -13.40597 -13.34237 -12.95780 -12.46538 -12.37713 -12.32664 -12.18390 -12.04605 -11.80354 -11.53774 -10.71686 -10.57496 -10.04153 -9.46838 -9.22829 -1.18091 -0.65587 -0.22439 0.45628 1.27423 1.38628 1.46529 1.64723 1.81362 2.03150 2.06819 2.10300 2.36065 2.75199 2.85434 3.20000 3.35065 3.47328 3.58904 3.68316 3.86022 3.87569 3.91026 3.95038 3.97612 4.05065 4.08791 4.15272 4.37358 4.43600 4.48299 4.53687 4.60691 4.79218 4.83702 4.89936 4.95708 5.11194 5.13118 5.43084 5.69589 5.98836 7.25809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.057 4.057 3 Si 1.073 2.927 4 H -0.273 1.273 5 H -0.248 1.248 6 H -0.226 1.226 7 C 0.090 3.910 8 C 0.068 3.932 9 O -0.380 6.380 10 C 0.046 3.954 11 C 0.079 3.921 12 N -0.991 5.991 13 S 2.662 3.338 14 O -0.965 6.965 15 O -0.958 6.958 16 C -0.669 4.669 17 C -0.028 4.028 18 C -0.110 4.110 19 C -0.042 4.042 20 C 0.002 3.998 21 C 0.107 3.893 22 O -0.317 6.317 23 C 0.205 3.795 24 O -0.313 6.313 25 H 0.366 0.634 26 H 0.126 0.874 27 H 0.048 0.952 28 H 0.130 0.870 29 H 0.132 0.868 30 H 0.049 0.951 31 H 0.104 0.896 32 H 0.105 0.895 33 H 0.171 0.829 34 H 0.189 0.811 35 H 0.172 0.828 36 H 0.113 0.887 37 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.275 -6.806 -0.418 6.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.270 5.270 2 C -0.301 4.301 3 Si 0.886 3.114 4 H -0.198 1.198 5 H -0.172 1.172 6 H -0.148 1.148 7 C -0.018 4.018 8 C -0.011 4.011 9 O -0.298 6.298 10 C -0.032 4.032 11 C -0.045 4.045 12 N -0.834 5.834 13 S 2.759 3.241 14 O -0.954 6.954 15 O -0.943 6.943 16 C -0.759 4.759 17 C -0.047 4.047 18 C -0.129 4.129 19 C -0.060 4.060 20 C -0.043 4.043 21 C 0.060 3.940 22 O -0.233 6.233 23 C 0.095 3.905 24 O -0.229 6.229 25 H 0.215 0.785 26 H 0.143 0.857 27 H 0.066 0.934 28 H 0.148 0.852 29 H 0.150 0.850 30 H 0.068 0.932 31 H 0.122 0.878 32 H 0.123 0.877 33 H 0.188 0.812 34 H 0.206 0.794 35 H 0.190 0.810 36 H 0.130 0.870 37 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 0.122 -4.852 -0.619 4.893 hybrid contribution -1.209 -1.612 0.352 2.045 sum -1.086 -6.464 -0.267 6.560 Atomic orbital electron populations 1.67850 1.08841 1.48645 1.01705 1.31645 0.96259 1.03875 0.98315 0.83679 0.75650 0.70386 0.81663 1.19791 1.17165 1.14835 1.22811 1.03319 0.90254 0.85465 1.22931 0.97955 0.83173 0.97088 1.88005 1.67116 1.26216 1.48445 1.23114 0.99173 0.95981 0.84971 1.22468 1.03248 0.78779 0.99993 1.57708 1.67303 1.22897 1.35475 1.02977 0.73891 0.74700 0.72560 1.93548 1.69174 1.86443 1.46273 1.93826 1.80301 1.43754 1.76427 1.29533 1.19465 1.24545 1.02319 1.21205 0.98907 0.91195 0.93387 1.21588 0.92170 0.99009 1.00101 1.20960 1.00954 0.95379 0.88739 1.20133 0.90552 1.01152 0.92493 1.19222 0.95284 0.92250 0.87228 1.87338 1.61236 1.52264 1.22438 1.26230 0.82226 0.93720 0.88343 1.87416 1.35062 1.81281 1.19169 0.78510 0.85680 0.93384 0.85242 0.85004 0.93242 0.87753 0.87674 0.81182 0.79369 0.81027 0.86998 0.82372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.62 -6.26 11.34 24.11 0.27 -5.99 16 2 C -0.06 -0.33 2.62 88.68 0.23 -0.10 16 3 Si 1.07 3.99 29.33 68.60 2.01 6.01 16 4 H -0.27 -2.35 7.11 99.48 0.71 -1.64 16 5 H -0.25 -0.87 7.11 99.48 0.71 -0.17 16 6 H -0.23 0.24 7.11 99.48 0.71 0.95 16 7 C 0.09 0.11 3.22 44.22 0.14 0.25 16 8 C 0.07 -0.03 6.25 72.08 0.45 0.42 16 9 O -0.38 -0.06 10.74 -148.98 -1.60 -1.66 16 10 C 0.05 -0.20 6.98 72.08 0.50 0.31 16 11 C 0.08 -0.30 6.62 86.36 0.57 0.27 16 12 N -0.99 -1.70 3.33 -493.23 -1.64 -3.35 16 13 S 2.66 17.31 4.91 -56.49 -0.28 17.03 16 14 O -0.96 -9.60 16.92 -128.00 -2.17 -11.77 16 15 O -0.96 -11.05 10.14 -128.00 -1.30 -12.34 16 16 C -0.67 -2.13 5.51 22.34 0.12 -2.01 16 17 C -0.03 0.04 9.54 22.27 0.21 0.26 16 18 C -0.11 0.64 10.04 22.27 0.22 0.87 16 19 C -0.04 0.15 10.06 22.34 0.22 0.37 16 20 C 0.00 0.00 7.15 22.59 0.16 0.17 16 21 C 0.11 0.44 6.65 22.59 0.15 0.59 16 22 O -0.32 -1.40 7.96 -76.00 -0.60 -2.00 16 23 C 0.21 -0.33 8.89 113.37 1.01 0.68 16 24 O -0.31 -0.79 11.40 -76.07 -0.87 -1.66 16 25 H 0.37 3.72 1.76 -185.81 -0.33 3.40 16 26 H 0.13 -0.43 7.52 -2.38 -0.02 -0.44 16 27 H 0.05 0.05 7.86 -2.38 -0.02 0.03 16 28 H 0.13 -0.49 8.14 -2.39 -0.02 -0.51 16 29 H 0.13 -1.15 8.14 -2.39 -0.02 -1.17 16 30 H 0.05 -0.21 8.14 -2.39 -0.02 -0.23 16 31 H 0.10 -0.60 8.14 -2.39 -0.02 -0.61 16 32 H 0.11 -0.75 7.69 -2.39 -0.02 -0.77 16 33 H 0.17 -0.71 7.33 -2.91 -0.02 -0.73 16 34 H 0.19 -2.49 8.06 -2.91 -0.02 -2.51 16 35 H 0.17 -1.51 8.06 -2.91 -0.02 -1.53 16 36 H 0.11 -0.73 8.14 -2.39 -0.02 -0.75 16 37 H 0.16 -0.93 8.14 -2.39 -0.02 -0.95 16 Total: 0.00 -20.70 308.08 -0.61 -21.31 By element: Atomic # 1 Polarization: -9.22 SS G_CDS: 1.55 Total: -7.66 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: 4.00 Total: 2.07 kcal Atomic # 7 Polarization: -7.97 SS G_CDS: -1.37 Total: -9.33 kcal Atomic # 8 Polarization: -22.89 SS G_CDS: -6.54 Total: -29.43 kcal Atomic # 14 Polarization: 3.99 SS G_CDS: 2.01 Total: 6.01 kcal Atomic # 16 Polarization: 17.31 SS G_CDS: -0.28 Total: 17.03 kcal Total: -20.70 -0.61 -21.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548993073.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.059 kcal (2) G-P(sol) polarization free energy of solvation -20.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds