Wall clock time and date at job start Fri Apr 10 2020 14:48:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 119.99654 * 2 1 4 4 H 1.48504 * 109.47270 * 269.99880 * 3 2 1 5 5 H 1.48497 * 109.47481 * 30.00221 * 3 2 1 6 6 H 1.48506 * 109.47067 * 150.00517 * 3 2 1 7 7 C 1.38812 * 120.00495 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00068 * 200.03605 * 7 2 1 9 9 N 1.36937 * 119.99468 * 20.03166 * 7 2 1 10 10 C 1.46501 * 120.00281 * 39.38282 * 9 7 2 11 11 C 1.50702 * 109.46843 * 82.95045 * 10 9 7 12 12 O 1.20819 * 120.00062 * 359.97438 * 11 10 9 13 13 O 1.34235 * 119.99638 * 180.02562 * 11 10 9 14 14 S 1.65604 * 119.99886 * 219.38040 * 9 7 2 15 15 O 1.42104 * 106.40022 * 23.53971 * 14 9 7 16 16 O 1.42094 * 106.40193 * 156.46188 * 14 9 7 17 17 C 1.76199 * 107.21769 * 270.00399 * 14 9 7 18 18 C 1.38292 * 120.11653 * 269.71900 * 17 14 9 19 19 C 1.37924 * 120.35248 * 179.97438 * 18 17 14 20 20 C 1.39291 * 120.24052 * 0.55465 * 19 18 17 21 21 C 1.38886 * 118.87405 * 359.41178 * 20 19 18 22 22 C 1.37741 * 120.78398 * 0.41584 * 21 20 19 23 23 C 1.51643 * 107.03789 * 180.67935 * 21 20 19 24 24 C 1.54715 * 101.92104 * 15.47228 * 23 21 20 25 25 O 1.36132 * 129.88406 * 179.08994 * 20 19 18 26 26 H 0.96995 * 120.00346 * 359.97438 * 1 2 3 27 27 H 1.08996 * 109.46797 * 322.95028 * 10 9 7 28 28 H 1.08998 * 109.46924 * 202.95149 * 10 9 7 29 29 H 0.96699 * 116.99438 * 180.02562 * 13 11 10 30 30 H 1.08001 * 119.82264 * 0.18092 * 18 17 14 31 31 H 1.08003 * 119.88330 * 180.28222 * 19 18 17 32 32 H 1.08007 * 120.00744 * 179.76635 * 22 21 20 33 33 H 1.09001 * 110.94071 * 133.62778 * 23 21 20 34 34 H 1.09001 * 110.93818 * 257.28101 * 23 21 20 35 35 H 1.08994 * 110.74912 * 93.01363 * 24 23 21 36 36 H 1.08996 * 110.74592 * 216.18995 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4403 0.7000 7 6 2.0104 -1.2021 -0.0005 8 1 3.0413 -1.2305 0.3199 9 7 1.3878 -2.3519 -0.4073 10 6 0.4700 -2.3236 -1.5488 11 6 1.2585 -2.4167 -2.8297 12 8 2.4634 -2.4978 -2.7928 13 8 0.6222 -2.4084 -4.0116 14 16 1.6724 -3.7746 0.3912 15 8 2.1066 -3.4216 1.6974 16 8 0.5465 -4.6054 0.1443 17 6 3.0449 -4.5493 -0.3968 18 6 2.8384 -5.4255 -1.4466 19 6 3.9091 -6.0342 -2.0673 20 6 5.2083 -5.7803 -1.6339 21 6 5.4030 -4.8979 -0.5792 22 6 4.3324 -4.2883 0.0368 23 6 6.8986 -4.8086 -0.3449 24 6 7.4634 -5.4258 -1.6464 25 8 6.3921 -6.2785 -2.0851 26 1 -0.4850 0.8400 0.0004 27 1 -0.0956 -1.3920 -1.5372 28 1 -0.2175 -3.1669 -1.4832 29 1 1.1704 -2.4706 -4.8057 30 1 1.8335 -5.6316 -1.7845 31 1 3.7394 -6.7137 -2.8894 32 1 4.4981 -3.6070 0.8584 33 1 7.2147 -3.7711 -0.2367 34 1 7.1924 -5.3962 0.5249 35 1 7.6668 -4.6504 -2.3849 36 1 8.3626 -6.0061 -1.4400 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739087485.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:48:26 Heat of formation + Delta-G solvation = -150.819899 kcal Electronic energy + Delta-G solvation = -26766.712035 eV Core-core repulsion = 22730.282279 eV Total energy + Delta-G solvation = -4036.429756 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.070 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.04437 -39.40964 -37.31095 -36.26213 -35.90202 -34.96702 -34.79944 -32.68368 -31.52397 -30.12585 -29.18683 -27.65871 -24.27086 -23.70643 -22.47557 -21.75796 -21.00357 -18.68647 -17.74057 -17.42753 -17.37547 -16.67851 -16.59373 -16.44653 -16.09781 -15.46181 -14.89238 -14.70813 -14.44198 -14.04992 -13.83670 -13.33445 -13.20217 -12.99599 -12.81995 -12.62392 -12.48774 -11.90630 -11.84686 -11.56598 -11.26550 -11.17342 -11.06322 -11.00948 -10.92443 -10.84771 -10.80068 -10.56769 -10.29601 -10.24949 -9.83170 -9.17793 -8.76833 -8.29373 -7.92184 -6.40208 -4.14162 1.08046 1.44229 1.49558 3.02643 3.15747 3.16940 3.24575 3.27983 3.55175 3.71774 4.14521 4.36798 4.41908 4.53586 4.65576 4.86421 4.93399 4.99782 5.16025 5.23603 5.37529 5.51069 5.63146 5.71337 5.77162 5.99044 6.03384 6.06959 6.19775 6.39904 6.42648 6.63617 6.65055 7.06271 7.16715 7.18901 7.52148 8.25001 8.67252 8.83195 9.23604 10.64513 Molecular weight = 327.07amu Principal moments of inertia in cm(-1) A = 0.013434 B = 0.005413 C = 0.005145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.796009 B = 5171.116653 C = 5441.202637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.041 3.959 3 Si 0.919 3.081 4 H -0.279 1.279 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.287 4.287 8 H 0.092 0.908 9 N -0.822 5.822 10 C 0.124 3.876 11 C 0.448 3.552 12 O -0.503 6.503 13 O -0.529 6.529 14 S 2.656 3.344 15 O -0.959 6.959 16 O -0.993 6.993 17 C -0.674 4.674 18 C 0.016 3.984 19 C -0.159 4.159 20 C 0.145 3.855 21 C -0.200 4.200 22 C 0.038 3.962 23 C -0.108 4.108 24 C 0.051 3.949 25 O -0.306 6.306 26 H 0.271 0.729 27 H 0.151 0.849 28 H 0.107 0.893 29 H 0.393 0.607 30 H 0.140 0.860 31 H 0.130 0.870 32 H 0.141 0.859 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.078 0.922 36 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.262 -6.703 -5.636 12.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.166 4.166 3 Si 0.746 3.254 4 H -0.205 1.205 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.421 4.421 8 H 0.109 0.891 9 N -0.651 5.651 10 C -0.006 4.006 11 C 0.288 3.712 12 O -0.390 6.390 13 O -0.339 6.339 14 S 2.752 3.248 15 O -0.949 6.949 16 O -0.983 6.983 17 C -0.759 4.759 18 C -0.003 4.003 19 C -0.178 4.178 20 C 0.099 3.901 21 C -0.201 4.201 22 C 0.019 3.981 23 C -0.145 4.145 24 C -0.024 4.024 25 O -0.220 6.220 26 H 0.081 0.919 27 H 0.167 0.833 28 H 0.125 0.875 29 H 0.250 0.750 30 H 0.157 0.843 31 H 0.148 0.852 32 H 0.158 0.842 33 H 0.113 0.887 34 H 0.108 0.892 35 H 0.096 0.904 36 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 7.851 -7.217 -4.644 11.631 hybrid contribution 1.530 0.898 -1.186 2.134 sum 9.381 -6.320 -5.830 12.725 Atomic orbital electron populations 1.69881 1.05976 1.27885 1.46424 1.25418 0.95278 0.99832 0.96066 0.86051 0.79810 0.81220 0.78362 1.20462 1.20778 1.19150 1.19023 0.95158 0.84100 1.43845 0.89065 1.52301 1.55804 1.20733 1.36309 1.20991 0.91918 1.08559 0.79115 1.25390 0.88454 0.71623 0.85750 1.90653 1.15975 1.44877 1.87457 1.84636 1.46012 1.86234 1.17065 1.03793 0.73426 0.73423 0.74204 1.93470 1.82880 1.82882 1.35631 1.93436 1.48924 1.69637 1.86283 1.31275 1.16735 1.14593 1.13260 1.20526 0.98705 0.90431 0.90672 1.20218 0.88667 1.05660 1.03275 1.19721 0.87251 0.91672 0.91454 1.20745 0.95594 1.03940 0.99850 1.19977 0.89331 0.93288 0.95534 1.21773 0.91003 1.03250 0.98486 1.23856 0.89697 0.93568 0.95251 1.86800 1.13494 1.48062 1.73632 0.91850 0.83262 0.87525 0.75030 0.84257 0.85188 0.84165 0.88729 0.89164 0.90362 0.87592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -22.00 11.43 55.49 0.63 -21.37 16 2 C 0.04 1.03 5.04 -17.43 -0.09 0.94 16 3 Si 0.92 19.83 29.60 -169.99 -5.03 14.80 16 4 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 5 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 6 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 7 C -0.29 -7.27 8.63 -15.06 -0.13 -7.40 16 8 H 0.09 2.28 7.91 -52.49 -0.41 1.87 16 9 N -0.82 -19.47 2.36 -61.09 -0.14 -19.62 16 10 C 0.12 2.67 5.91 -5.19 -0.03 2.64 16 11 C 0.45 8.85 8.35 36.01 0.30 9.15 16 12 O -0.50 -10.92 16.96 -18.74 -0.32 -11.24 16 13 O -0.53 -8.37 13.42 -39.27 -0.53 -8.90 16 14 S 2.66 60.17 5.66 -107.50 -0.61 59.56 16 15 O -0.96 -23.95 16.51 -57.17 -0.94 -24.90 16 16 O -0.99 -22.92 15.82 -57.17 -0.90 -23.82 16 17 C -0.67 -13.38 5.92 -39.52 -0.23 -13.61 16 18 C 0.02 0.28 9.50 -39.68 -0.38 -0.09 16 19 C -0.16 -2.57 10.06 -39.31 -0.40 -2.97 16 20 C 0.14 2.36 7.04 -38.95 -0.27 2.09 16 21 C -0.20 -3.25 6.27 -104.10 -0.65 -3.91 16 22 C 0.04 0.70 9.51 -39.72 -0.38 0.33 16 23 C -0.11 -1.27 7.12 -26.52 -0.19 -1.46 16 24 C 0.05 0.54 8.01 38.06 0.30 0.84 16 25 O -0.31 -4.41 11.10 -20.16 -0.22 -4.63 16 26 H 0.27 6.50 8.31 -40.82 -0.34 6.16 16 27 H 0.15 3.42 5.57 -51.93 -0.29 3.13 16 28 H 0.11 2.11 6.88 -51.93 -0.36 1.75 16 29 H 0.39 4.39 9.10 45.56 0.41 4.80 16 30 H 0.14 2.28 7.61 -52.49 -0.40 1.88 16 31 H 0.13 1.74 8.06 -52.48 -0.42 1.32 16 32 H 0.14 2.51 7.63 -52.48 -0.40 2.11 16 33 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 329.18 15.07 4.96 4.96 Total: -1.00 -32.40 329.18 -7.94 -40.34 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -2.70 Total: 8.27 kcal Atomic # 6 Polarization: -11.32 SS G_CDS: -2.14 Total: -13.46 kcal Atomic # 7 Polarization: -41.47 SS G_CDS: 0.49 Total: -40.98 kcal Atomic # 8 Polarization: -70.57 SS G_CDS: -2.92 Total: -73.49 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.03 Total: 14.80 kcal Atomic # 16 Polarization: 60.17 SS G_CDS: -0.61 Total: 59.56 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.40 -7.94 -40.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739087485.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.476 kcal (2) G-P(sol) polarization free energy of solvation -32.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds