Wall clock time and date at job start Fri Apr 10 2020 14:48:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 119.99654 * 2 1 4 4 H 1.48504 * 109.47270 * 269.99880 * 3 2 1 5 5 H 1.48497 * 109.47481 * 30.00221 * 3 2 1 6 6 H 1.48506 * 109.47067 * 150.00517 * 3 2 1 7 7 C 1.38812 * 120.00495 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00068 * 200.03605 * 7 2 1 9 9 N 1.36937 * 119.99468 * 20.03166 * 7 2 1 10 10 C 1.46501 * 120.00281 * 39.38282 * 9 7 2 11 11 C 1.50702 * 109.46843 * 82.95045 * 10 9 7 12 12 O 1.20819 * 120.00062 * 359.97438 * 11 10 9 13 13 O 1.34235 * 119.99638 * 180.02562 * 11 10 9 14 14 S 1.65604 * 119.99886 * 219.38040 * 9 7 2 15 15 O 1.42104 * 106.40022 * 23.53971 * 14 9 7 16 16 O 1.42094 * 106.40193 * 156.46188 * 14 9 7 17 17 C 1.76199 * 107.21769 * 270.00399 * 14 9 7 18 18 C 1.38292 * 120.11653 * 269.71900 * 17 14 9 19 19 C 1.37924 * 120.35248 * 179.97438 * 18 17 14 20 20 C 1.39291 * 120.24052 * 0.55465 * 19 18 17 21 21 C 1.38886 * 118.87405 * 359.41178 * 20 19 18 22 22 C 1.37741 * 120.78398 * 0.41584 * 21 20 19 23 23 C 1.51643 * 107.03789 * 180.67935 * 21 20 19 24 24 C 1.54715 * 101.92104 * 15.47228 * 23 21 20 25 25 O 1.36132 * 129.88406 * 179.08994 * 20 19 18 26 26 H 0.96995 * 120.00346 * 359.97438 * 1 2 3 27 27 H 1.08996 * 109.46797 * 322.95028 * 10 9 7 28 28 H 1.08998 * 109.46924 * 202.95149 * 10 9 7 29 29 H 0.96699 * 116.99438 * 180.02562 * 13 11 10 30 30 H 1.08001 * 119.82264 * 0.18092 * 18 17 14 31 31 H 1.08003 * 119.88330 * 180.28222 * 19 18 17 32 32 H 1.08007 * 120.00744 * 179.76635 * 22 21 20 33 33 H 1.09001 * 110.94071 * 133.62778 * 23 21 20 34 34 H 1.09001 * 110.93818 * 257.28101 * 23 21 20 35 35 H 1.08994 * 110.74912 * 93.01363 * 24 23 21 36 36 H 1.08996 * 110.74592 * 216.18995 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4403 0.7000 7 6 2.0104 -1.2021 -0.0005 8 1 3.0413 -1.2305 0.3199 9 7 1.3878 -2.3519 -0.4073 10 6 0.4700 -2.3236 -1.5488 11 6 1.2585 -2.4167 -2.8297 12 8 2.4634 -2.4978 -2.7928 13 8 0.6222 -2.4084 -4.0116 14 16 1.6724 -3.7746 0.3912 15 8 2.1066 -3.4216 1.6974 16 8 0.5465 -4.6054 0.1443 17 6 3.0449 -4.5493 -0.3968 18 6 2.8384 -5.4255 -1.4466 19 6 3.9091 -6.0342 -2.0673 20 6 5.2083 -5.7803 -1.6339 21 6 5.4030 -4.8979 -0.5792 22 6 4.3324 -4.2883 0.0368 23 6 6.8986 -4.8086 -0.3449 24 6 7.4634 -5.4258 -1.6464 25 8 6.3921 -6.2785 -2.0851 26 1 -0.4850 0.8400 0.0004 27 1 -0.0956 -1.3920 -1.5372 28 1 -0.2175 -3.1669 -1.4832 29 1 1.1704 -2.4706 -4.8057 30 1 1.8335 -5.6316 -1.7845 31 1 3.7394 -6.7137 -2.8894 32 1 4.4981 -3.6070 0.8584 33 1 7.2147 -3.7711 -0.2367 34 1 7.1924 -5.3962 0.5249 35 1 7.6668 -4.6504 -2.3849 36 1 8.3626 -6.0061 -1.4400 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739087485.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:48:25 Heat of formation + Delta-G solvation = -174.479476 kcal Electronic energy + Delta-G solvation = -26767.737992 eV Core-core repulsion = 22730.282279 eV Total energy + Delta-G solvation = -4037.455712 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.070 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.17913 -40.95526 -38.56560 -38.09492 -37.54848 -36.69149 -36.53605 -33.79031 -33.39107 -31.43903 -30.30354 -29.39298 -26.11254 -24.83500 -23.73964 -22.94889 -22.55407 -20.46699 -19.33644 -18.94459 -18.62390 -18.34059 -18.20466 -17.73392 -17.16131 -17.04260 -16.55052 -16.41631 -16.13916 -15.30596 -15.24998 -14.99505 -14.35316 -14.22168 -14.10687 -14.00090 -13.82772 -13.56527 -13.34608 -13.09605 -13.00484 -12.88874 -12.74940 -12.65048 -12.52586 -12.24669 -12.09371 -12.04721 -11.96827 -11.86930 -11.45720 -10.98051 -10.07464 -9.78844 -9.49520 -8.27339 -6.06857 -0.41950 -0.14207 0.18214 1.43680 1.47317 1.48472 1.58442 2.00834 2.08556 2.36429 2.42384 2.73319 2.88313 3.18100 3.25779 3.52016 3.66832 3.80247 4.04111 4.10497 4.17387 4.31204 4.40755 4.53583 4.54611 4.76689 4.78886 4.81569 4.93332 4.97273 5.05274 5.11853 5.29938 5.36662 5.67209 5.77890 5.99107 6.37844 6.94554 7.23660 7.35252 8.77408 Molecular weight = 327.07amu Principal moments of inertia in cm(-1) A = 0.013434 B = 0.005413 C = 0.005145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.796009 B = 5171.116653 C = 5441.202637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.003 3.997 3 Si 0.973 3.027 4 H -0.275 1.275 5 H -0.277 1.277 6 H -0.265 1.265 7 C -0.306 4.306 8 H 0.084 0.916 9 N -0.833 5.833 10 C 0.117 3.883 11 C 0.459 3.541 12 O -0.524 6.524 13 O -0.515 6.515 14 S 2.662 3.338 15 O -0.993 6.993 16 O -1.006 7.006 17 C -0.688 4.688 18 C 0.006 3.994 19 C -0.159 4.159 20 C 0.146 3.854 21 C -0.205 4.205 22 C 0.016 3.984 23 C -0.108 4.108 24 C 0.048 3.952 25 O -0.310 6.310 26 H 0.275 0.725 27 H 0.137 0.863 28 H 0.117 0.883 29 H 0.419 0.581 30 H 0.148 0.852 31 H 0.160 0.840 32 H 0.134 0.866 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.089 0.911 36 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.395 -7.289 -7.259 14.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.202 4.202 3 Si 0.797 3.203 4 H -0.201 1.201 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.440 4.440 8 H 0.102 0.898 9 N -0.663 5.663 10 C -0.012 4.012 11 C 0.299 3.701 12 O -0.412 6.412 13 O -0.328 6.328 14 S 2.762 3.238 15 O -0.984 6.984 16 O -0.996 6.996 17 C -0.776 4.776 18 C -0.014 4.014 19 C -0.179 4.179 20 C 0.099 3.901 21 C -0.207 4.207 22 C -0.003 4.003 23 C -0.145 4.145 24 C -0.026 4.026 25 O -0.224 6.224 26 H 0.084 0.916 27 H 0.154 0.846 28 H 0.135 0.865 29 H 0.279 0.721 30 H 0.166 0.834 31 H 0.177 0.823 32 H 0.152 0.848 33 H 0.126 0.874 34 H 0.127 0.873 35 H 0.108 0.892 36 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 9.942 -7.774 -6.279 14.097 hybrid contribution 0.947 0.951 -0.787 1.556 sum 10.889 -6.823 -7.066 14.665 Atomic orbital electron populations 1.69954 1.06896 1.28662 1.47213 1.26111 0.96012 1.02277 0.95791 0.85237 0.78805 0.77890 0.78382 1.20078 1.20246 1.18879 1.19133 0.95186 0.85120 1.44569 0.89817 1.52305 1.56112 1.20601 1.37280 1.20947 0.92002 1.08320 0.79958 1.24746 0.87708 0.71297 0.86303 1.90646 1.16646 1.45939 1.87966 1.84540 1.45854 1.85406 1.16989 1.03077 0.73840 0.73142 0.73754 1.93415 1.83519 1.83504 1.37941 1.93402 1.50218 1.69577 1.86427 1.30703 1.15830 1.16226 1.14884 1.20693 0.99899 0.90403 0.90374 1.20508 0.88344 1.05460 1.03563 1.19939 0.88087 0.90978 0.91104 1.21174 0.97505 1.02847 0.99199 1.20047 0.89807 0.94261 0.96193 1.21961 0.87724 1.04748 1.00048 1.24239 0.89590 0.94092 0.94634 1.86805 1.13408 1.48688 1.73477 0.91557 0.84615 0.86502 0.72086 0.83426 0.82275 0.84782 0.87398 0.87290 0.89242 0.83745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -46.12 11.43 21.65 0.25 -45.87 16 2 C 0.00 0.14 5.04 84.86 0.43 0.57 16 3 Si 0.97 40.79 29.60 68.60 2.03 42.82 16 4 H -0.28 -11.29 7.11 99.48 0.71 -10.59 16 5 H -0.28 -11.29 7.11 99.48 0.71 -10.59 16 6 H -0.26 -10.86 7.11 99.48 0.71 -10.16 16 7 C -0.31 -15.94 8.63 84.03 0.72 -15.22 16 8 H 0.08 4.35 7.91 -2.91 -0.02 4.33 16 9 N -0.83 -40.56 2.36 -347.18 -0.82 -41.38 16 10 C 0.12 5.12 5.91 85.63 0.51 5.62 16 11 C 0.46 17.87 8.35 71.24 0.59 18.46 16 12 O -0.52 -22.45 16.96 21.98 0.37 -22.07 16 13 O -0.52 -15.36 13.42 -51.46 -0.69 -16.05 16 14 S 2.66 124.71 5.66 -56.49 -0.32 124.39 16 15 O -0.99 -51.91 16.51 -128.00 -2.11 -54.02 16 16 O -1.01 -47.71 15.82 -128.00 -2.02 -49.74 16 17 C -0.69 -27.64 5.92 22.31 0.13 -27.51 16 18 C 0.01 0.20 9.50 22.21 0.21 0.41 16 19 C -0.16 -4.87 10.06 22.45 0.23 -4.64 16 20 C 0.15 4.41 7.04 22.68 0.16 4.57 16 21 C -0.21 -6.38 6.27 -19.53 -0.12 -6.51 16 22 C 0.02 0.61 9.51 22.18 0.21 0.82 16 23 C -0.11 -2.21 7.12 30.73 0.22 -1.99 16 24 C 0.05 0.82 8.01 72.57 0.58 1.40 16 25 O -0.31 -7.86 11.10 -95.05 -1.06 -8.91 16 26 H 0.27 13.34 8.31 -92.71 -0.77 12.57 16 27 H 0.14 6.37 5.57 -2.39 -0.01 6.35 16 28 H 0.12 4.73 6.88 -2.39 -0.02 4.71 16 29 H 0.42 8.20 9.10 -74.06 -0.67 7.53 16 30 H 0.15 4.77 7.61 -2.91 -0.02 4.75 16 31 H 0.16 3.80 8.06 -2.91 -0.02 3.78 16 32 H 0.13 5.01 7.63 -2.91 -0.02 4.99 16 33 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.14 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -70.72 329.18 -0.02 -70.74 By element: Atomic # 1 Polarization: 23.63 SS G_CDS: 0.48 Total: 24.11 kcal Atomic # 6 Polarization: -27.88 SS G_CDS: 3.87 Total: -24.01 kcal Atomic # 7 Polarization: -86.68 SS G_CDS: -0.57 Total: -87.25 kcal Atomic # 8 Polarization: -145.29 SS G_CDS: -5.51 Total: -150.80 kcal Atomic # 14 Polarization: 40.79 SS G_CDS: 2.03 Total: 42.82 kcal Atomic # 16 Polarization: 124.71 SS G_CDS: -0.32 Total: 124.39 kcal Total: -70.72 -0.02 -70.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739087485.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.740 kcal (2) G-P(sol) polarization free energy of solvation -70.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds