Wall clock time and date at job start Fri Apr 10 2020 14:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 120.00046 * 2 1 4 4 H 1.48498 * 109.47003 * 239.99654 * 3 2 1 5 5 H 1.48501 * 109.46950 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47176 * 119.99795 * 3 2 1 7 7 C 1.37878 * 120.00263 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00405 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99672 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.46796 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47251 * 179.97438 * 10 9 7 12 12 O 1.21286 * 119.99333 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00484 * 179.97438 * 11 10 9 14 14 S 1.65596 * 120.00289 * 180.02562 * 13 11 10 15 15 O 1.42106 * 106.39787 * 311.46265 * 14 13 11 16 16 O 1.42091 * 106.40383 * 178.54144 * 14 13 11 17 17 C 1.76198 * 107.21922 * 64.99772 * 14 13 11 18 18 C 1.38247 * 119.92916 * 270.02271 * 17 14 13 19 19 C 1.38240 * 120.14459 * 179.74977 * 18 17 14 20 20 C 1.38552 * 120.02633 * 0.42901 * 19 18 17 21 21 C 1.39265 * 119.82706 * 359.57585 * 20 19 18 22 22 C 1.38231 * 119.92687 * 90.00462 * 17 14 13 23 23 O 1.36496 * 108.64230 * 180.24572 * 21 20 19 24 24 C 1.43981 * 105.48444 * 342.72036 * 23 21 20 25 25 O 1.36505 * 131.53353 * 179.87931 * 20 19 18 26 26 H 0.97000 * 119.99897 * 0.02562 * 1 2 3 27 27 H 1.08993 * 109.46935 * 60.00223 * 9 7 2 28 28 H 1.08993 * 109.47190 * 299.99626 * 9 7 2 29 29 H 1.09005 * 109.47335 * 60.00345 * 10 9 7 30 30 H 1.09000 * 109.47519 * 300.00003 * 10 9 7 31 31 H 0.97005 * 119.99708 * 0.02562 * 13 11 10 32 32 H 1.07994 * 119.93290 * 0.02562 * 18 17 14 33 33 H 1.07997 * 119.99327 * 180.33354 * 19 18 17 34 34 H 1.08003 * 119.98943 * 0.02562 * 22 17 14 35 35 H 1.09007 * 110.56955 * 268.54960 * 24 23 21 36 36 H 1.09003 * 110.57719 * 145.67764 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4918 -4.9672 0.0012 12 8 0.2790 -4.9671 0.0011 13 7 2.1657 -6.1344 0.0008 14 16 1.3378 -7.5685 0.0008 15 8 0.3558 -7.4648 1.0228 16 8 2.3172 -8.5973 -0.0344 17 6 0.4604 -7.6644 -1.5242 18 6 -0.8231 -7.1586 -1.6145 19 6 -1.5136 -7.2268 -2.8102 20 6 -0.9233 -7.8108 -3.9193 21 6 0.3696 -8.3203 -3.8283 22 6 1.0571 -8.2447 -2.6278 23 8 0.7235 -8.8321 -5.0432 24 6 -0.5115 -8.9990 -5.7644 25 8 -1.3796 -8.0035 -5.1914 26 1 -0.4850 0.8400 -0.0004 27 1 0.6248 -2.5571 -0.8896 28 1 0.6241 -2.5567 0.8903 29 1 2.8719 -3.6043 0.8906 30 1 2.8720 -3.6043 -0.8894 31 1 3.1357 -6.1343 0.0004 32 1 -1.2857 -6.7053 -0.7504 33 1 -2.5141 -6.8262 -2.8795 34 1 2.0599 -8.6391 -2.5544 35 1 -0.9164 -9.9983 -5.6043 36 1 -0.3626 -8.8110 -6.8277 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000813081538.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:48:31 Heat of formation + Delta-G solvation = -173.897760 kcal Electronic energy + Delta-G solvation = -25327.158740 eV Core-core repulsion = 21289.728253 eV Total energy + Delta-G solvation = -4037.430487 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.070 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.40409 -41.10868 -39.13016 -38.50615 -37.53319 -37.20663 -35.57935 -35.53486 -32.93462 -32.11838 -31.39844 -27.92440 -27.00358 -24.64888 -24.38240 -24.30438 -21.89470 -21.08956 -19.88783 -19.22865 -19.05695 -18.71687 -18.55225 -18.07712 -17.64490 -16.94179 -16.53543 -16.43724 -16.26844 -15.71936 -15.44103 -15.23172 -15.13473 -14.50997 -14.38379 -14.32025 -14.20329 -14.15262 -13.79082 -13.44330 -13.33134 -13.24562 -12.82541 -12.76757 -12.49900 -12.39504 -12.21318 -11.89584 -11.82120 -11.67602 -11.32194 -11.04817 -10.50661 -10.32796 -9.51744 -8.14134 -6.26669 -1.06217 -0.57393 -0.09023 1.11542 1.39695 1.46346 1.49163 1.56629 1.67379 2.04962 2.25937 2.45579 2.49574 3.08869 3.12297 3.20036 3.52549 3.65080 3.80276 3.85300 3.97066 4.06343 4.10143 4.28170 4.49680 4.52844 4.58485 4.65806 4.78245 4.84172 5.08081 5.09287 5.55733 5.68754 5.74375 5.81923 5.89930 6.20391 6.57361 6.93054 7.43273 8.97783 Molecular weight = 327.07amu Principal moments of inertia in cm(-1) A = 0.013732 B = 0.003418 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2038.553164 B = 8189.696151 C = 9382.517279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.004 4.004 3 Si 0.967 3.033 4 H -0.264 1.264 5 H -0.291 1.291 6 H -0.264 1.264 7 C -0.542 4.542 8 H 0.078 0.922 9 C 0.034 3.966 10 C -0.123 4.123 11 C 0.537 3.463 12 O -0.523 6.523 13 N -1.036 6.036 14 S 2.707 3.293 15 O -0.961 6.961 16 O -0.949 6.949 17 C -0.679 4.679 18 C 0.006 3.994 19 C -0.131 4.131 20 C 0.089 3.911 21 C -0.003 4.003 22 C -0.004 4.004 23 O -0.313 6.313 24 C 0.200 3.800 25 O -0.314 6.314 26 H 0.261 0.739 27 H -0.008 1.008 28 H -0.010 1.010 29 H 0.120 0.880 30 H 0.123 0.877 31 H 0.454 0.546 32 H 0.155 0.845 33 H 0.163 0.837 34 H 0.175 0.825 35 H 0.115 0.885 36 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.107 -20.160 -9.527 22.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.202 4.202 3 Si 0.792 3.208 4 H -0.188 1.188 5 H -0.217 1.217 6 H -0.189 1.189 7 C -0.580 4.580 8 H 0.096 0.904 9 C -0.004 4.004 10 C -0.165 4.165 11 C 0.326 3.674 12 O -0.396 6.396 13 N -0.806 5.806 14 S 2.799 3.201 15 O -0.951 6.951 16 O -0.939 6.939 17 C -0.767 4.767 18 C -0.014 4.014 19 C -0.150 4.150 20 C 0.043 3.957 21 C -0.048 4.048 22 C -0.023 4.023 23 O -0.230 6.230 24 C 0.090 3.910 25 O -0.230 6.230 26 H 0.070 0.930 27 H 0.010 0.990 28 H 0.009 0.991 29 H 0.138 0.862 30 H 0.141 0.859 31 H 0.295 0.705 32 H 0.172 0.828 33 H 0.180 0.820 34 H 0.192 0.808 35 H 0.132 0.868 36 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 3.114 -20.627 -9.105 22.761 hybrid contribution -0.042 1.111 -0.838 1.392 sum 3.073 -19.516 -9.944 22.118 Atomic orbital electron populations 1.70145 1.08125 1.27726 1.51519 1.26038 0.95642 1.03637 0.94861 0.85467 0.78098 0.77872 0.79366 1.18840 1.21722 1.18861 1.21690 0.94129 0.91555 1.50617 0.90403 1.18797 0.93885 0.92107 0.95589 1.21875 0.99683 0.88398 1.06507 1.21457 0.87956 0.86653 0.71287 1.90810 1.15209 1.87368 1.46167 1.54772 1.22927 1.21928 1.80940 1.01623 0.72985 0.72100 0.73405 1.93614 1.61361 1.85577 1.54597 1.93611 1.59915 1.53252 1.87147 1.30409 1.09050 1.16589 1.20631 1.20988 0.91633 0.90645 0.98116 1.20444 1.02701 1.03082 0.88820 1.20292 0.92638 0.96961 0.85845 1.19830 0.93927 1.02909 0.88146 1.19879 1.01003 0.94946 0.86519 1.87373 1.31900 1.81028 1.22668 1.26355 0.73165 0.92906 0.98527 1.87406 1.54732 1.59077 1.21737 0.92983 0.98963 0.99134 0.86175 0.85932 0.70497 0.82755 0.81953 0.80781 0.86793 0.81345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.01 13.29 21.45 0.28 -56.72 16 2 C 0.00 -0.22 5.46 84.66 0.46 0.24 16 3 Si 0.97 42.69 29.54 68.60 2.03 44.72 16 4 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 5 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 6 H -0.26 -11.03 7.11 99.48 0.71 -10.33 16 7 C -0.54 -28.86 9.11 25.60 0.23 -28.62 16 8 H 0.08 3.73 7.74 -2.91 -0.02 3.70 16 9 C 0.03 1.73 4.26 29.85 0.13 1.85 16 10 C -0.12 -4.20 5.64 29.85 0.17 -4.04 16 11 C 0.54 17.54 7.66 87.66 0.67 18.21 16 12 O -0.52 -21.36 13.17 13.26 0.17 -21.19 16 13 N -1.04 -23.80 5.70 -173.53 -0.99 -24.79 16 14 S 2.71 70.32 5.39 -56.49 -0.30 70.01 16 15 O -0.96 -32.57 16.22 -120.90 -1.96 -34.54 16 16 O -0.95 -24.14 17.27 -128.00 -2.21 -26.36 16 17 C -0.68 -17.58 5.75 22.27 0.13 -17.45 16 18 C 0.01 0.16 8.52 22.27 0.19 0.35 16 19 C -0.13 -3.30 10.06 22.35 0.22 -3.07 16 20 C 0.09 2.16 7.15 22.59 0.16 2.32 16 21 C 0.00 -0.07 7.15 22.59 0.16 0.09 16 22 C 0.00 -0.09 9.53 22.34 0.21 0.13 16 23 O -0.31 -6.30 11.40 -76.01 -0.87 -7.17 16 24 C 0.20 2.63 8.89 113.37 1.01 3.64 16 25 O -0.31 -6.58 11.40 -76.10 -0.87 -7.44 16 26 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 27 H -0.01 -0.46 8.10 -2.39 -0.02 -0.48 16 28 H -0.01 -0.56 8.10 -2.39 -0.02 -0.58 16 29 H 0.12 3.46 8.14 -2.38 -0.02 3.44 16 30 H 0.12 3.45 8.14 -2.39 -0.02 3.43 16 31 H 0.45 6.10 8.83 -96.74 -0.85 5.24 16 32 H 0.15 4.64 6.83 -2.91 -0.02 4.62 16 33 H 0.16 3.43 8.06 -2.91 -0.02 3.40 16 34 H 0.17 3.08 7.61 -2.91 -0.02 3.06 16 35 H 0.11 0.90 8.14 -2.38 -0.02 0.88 16 36 H 0.17 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -79.97 330.03 -0.67 -80.65 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: 0.29 Total: 9.18 kcal Atomic # 6 Polarization: -30.10 SS G_CDS: 3.75 Total: -26.35 kcal Atomic # 7 Polarization: -80.81 SS G_CDS: -0.70 Total: -81.51 kcal Atomic # 8 Polarization: -90.96 SS G_CDS: -5.73 Total: -96.69 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Atomic # 16 Polarization: 70.32 SS G_CDS: -0.30 Total: 70.01 kcal Total: -79.97 -0.67 -80.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813081538.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.250 kcal (2) G-P(sol) polarization free energy of solvation -79.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds