Wall clock time and date at job start Fri Apr 10 2020 14:49:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 119.99834 * 2 1 4 4 H 1.48502 * 109.46887 * 270.00406 * 3 2 1 5 5 H 1.48501 * 109.47170 * 30.00028 * 3 2 1 6 6 H 1.48494 * 109.46909 * 150.00207 * 3 2 1 7 7 C 1.37873 * 120.00231 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00247 * 179.97438 * 7 2 1 9 9 C 1.50707 * 120.00052 * 359.97438 * 7 2 1 10 10 C 1.52989 * 109.47146 * 179.97438 * 9 7 2 11 11 S 1.81399 * 109.47111 * 180.02562 * 10 9 7 12 12 O 1.42097 * 110.54543 * 68.37931 * 11 10 9 13 13 O 1.42102 * 110.54150 * 291.62556 * 11 10 9 14 14 N 1.65604 * 104.45333 * 180.02562 * 11 10 9 15 15 C 1.34774 * 119.99987 * 64.99596 * 14 11 10 16 16 O 1.21547 * 120.00227 * 0.02562 * 15 14 11 17 17 C 1.47860 * 119.99709 * 180.02562 * 15 14 11 18 18 C 1.39713 * 120.07455 * 0.02562 * 17 15 14 19 19 C 1.38064 * 120.15478 * 180.25727 * 18 17 15 20 20 C 1.38085 * 120.30136 * 359.43575 * 19 18 17 21 21 C 1.39714 * 120.13934 * 0.56125 * 20 19 18 22 22 C 1.47746 * 120.07759 * 179.74169 * 21 20 19 23 23 O 1.21463 * 120.00103 * 179.97438 * 22 21 20 24 24 O 1.34706 * 119.99937 * 359.97438 * 22 21 20 25 25 C 1.39287 * 120.06695 * 179.97438 * 17 15 14 26 26 H 0.97003 * 120.00079 * 359.97438 * 1 2 3 27 27 H 1.09005 * 109.46654 * 59.99789 * 9 7 2 28 28 H 1.08993 * 109.47002 * 300.00636 * 9 7 2 29 29 H 1.09005 * 109.47419 * 60.00376 * 10 9 7 30 30 H 1.08993 * 109.47787 * 300.00275 * 10 9 7 31 31 H 0.97000 * 119.99814 * 245.00196 * 14 11 10 32 32 H 1.08002 * 119.91780 * 359.97121 * 18 17 15 33 33 H 1.08005 * 119.84565 * 179.70485 * 19 18 17 34 34 H 1.08008 * 119.92682 * 180.28016 * 20 19 18 35 35 H 0.96698 * 117.00365 * 179.97438 * 24 22 21 36 36 H 1.07999 * 120.14996 * 0.02562 * 25 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0018 11 16 1.3384 -5.2330 -0.0026 12 8 0.6639 -5.4188 -1.2394 13 8 0.6649 -5.4205 1.2346 14 7 2.5205 -6.3927 -0.0032 15 6 3.3471 -6.5130 1.0544 16 8 3.2246 -5.7706 2.0090 17 6 4.4030 -7.5481 1.0536 18 6 4.5455 -8.4019 -0.0431 19 6 5.5274 -9.3725 -0.0434 20 6 6.3823 -9.4990 1.0335 21 6 6.2510 -8.6518 2.1367 22 6 7.1629 -8.7921 3.2907 23 8 7.0478 -8.0545 4.2489 24 8 8.1219 -9.7380 3.2803 25 6 5.2584 -7.6733 2.1457 26 1 -0.4850 0.8401 0.0004 27 1 0.6241 -2.5567 -0.8903 28 1 0.6247 -2.5571 0.8896 29 1 2.8727 -3.6047 0.8878 30 1 2.8713 -3.6039 -0.8921 31 1 2.6181 -6.9853 -0.7649 32 1 3.8829 -8.3054 -0.8906 33 1 5.6300 -10.0329 -0.8918 34 1 7.1512 -10.2575 1.0249 35 1 8.6946 -9.7913 4.0576 36 1 5.1527 -7.0155 2.9957 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821319994.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:49:11 Heat of formation + Delta-G solvation = -208.595009 kcal Electronic energy + Delta-G solvation = -24592.953135 eV Core-core repulsion = 20554.018063 eV Total energy + Delta-G solvation = -4038.935073 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.070 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.88855 -41.16050 -39.32730 -38.30904 -37.27374 -37.15267 -36.01558 -35.83333 -33.19924 -32.65653 -32.29484 -27.67460 -25.95639 -25.79424 -23.66990 -22.70011 -22.26148 -20.87124 -19.96088 -19.22506 -18.90912 -18.40018 -17.83709 -17.39620 -17.12832 -16.76200 -16.70834 -16.57301 -16.30349 -16.02924 -15.81577 -15.22674 -14.96268 -14.51150 -14.42124 -13.87450 -13.81082 -13.74196 -13.40814 -13.29864 -13.06548 -12.95851 -12.86420 -12.64321 -12.60712 -12.35949 -12.28155 -12.08725 -11.82233 -11.77885 -11.58396 -11.10934 -10.66396 -10.33006 -10.21886 -8.28580 -6.42573 -1.06596 -0.62511 -0.25827 1.10730 1.30611 1.39206 1.41716 1.52911 1.57433 1.94114 2.35680 2.50714 2.65623 2.89721 3.04928 3.14397 3.68046 3.72353 3.80949 3.94613 3.97923 4.01638 4.03402 4.27391 4.58492 4.67601 4.79849 5.01513 5.10729 5.19158 5.21334 5.22760 5.51636 5.55271 5.65269 5.66940 6.02619 6.28510 6.69971 6.89894 7.27416 8.83863 Molecular weight = 327.07amu Principal moments of inertia in cm(-1) A = 0.015800 B = 0.002911 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.744929 B = 9615.858474 C =10717.044574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.002 4.002 3 Si 0.975 3.025 4 H -0.265 1.265 5 H -0.282 1.282 6 H -0.262 1.262 7 C -0.542 4.542 8 H 0.073 0.927 9 C 0.023 3.977 10 C -0.580 4.580 11 S 2.603 3.397 12 O -0.962 6.962 13 O -0.977 6.977 14 N -1.031 6.031 15 C 0.580 3.420 16 O -0.528 6.528 17 C -0.165 4.165 18 C -0.033 4.033 19 C -0.122 4.122 20 C -0.013 4.013 21 C -0.152 4.152 22 C 0.532 3.468 23 O -0.553 6.553 24 O -0.496 6.496 25 C -0.012 4.012 26 H 0.269 0.731 27 H 0.019 0.981 28 H 0.005 0.995 29 H 0.132 0.868 30 H 0.155 0.845 31 H 0.449 0.551 32 H 0.173 0.827 33 H 0.189 0.811 34 H 0.176 0.824 35 H 0.436 0.564 36 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.267 -25.953 -3.543 31.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.201 4.201 3 Si 0.798 3.202 4 H -0.190 1.190 5 H -0.207 1.207 6 H -0.186 1.186 7 C -0.581 4.581 8 H 0.091 0.909 9 C -0.016 4.016 10 C -0.713 4.713 11 S 2.702 3.298 12 O -0.952 6.952 13 O -0.967 6.967 14 N -0.798 5.798 15 C 0.370 3.630 16 O -0.403 6.403 17 C -0.170 4.170 18 C -0.052 4.052 19 C -0.140 4.140 20 C -0.031 4.031 21 C -0.153 4.153 22 C 0.378 3.622 23 O -0.445 6.445 24 O -0.310 6.310 25 C -0.031 4.031 26 H 0.077 0.923 27 H 0.037 0.963 28 H 0.023 0.977 29 H 0.150 0.850 30 H 0.173 0.827 31 H 0.291 0.709 32 H 0.190 0.810 33 H 0.206 0.794 34 H 0.194 0.806 35 H 0.298 0.702 36 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 16.818 -25.342 -2.933 30.556 hybrid contribution 0.714 1.328 0.716 1.670 sum 17.532 -24.014 -2.217 29.816 Atomic orbital electron populations 1.70090 1.07981 1.28435 1.50668 1.26102 0.95908 1.03823 0.94238 0.85298 0.78471 0.77568 0.78840 1.19041 1.20735 1.18638 1.21480 0.93925 0.90794 1.51880 0.90876 1.18832 0.93440 0.92606 0.96769 1.30249 1.12933 1.15574 1.12530 1.05341 0.74544 0.76724 0.73237 1.93573 1.70993 1.85436 1.45245 1.93557 1.71749 1.84832 1.46552 1.54751 1.47928 1.49642 1.27512 1.18651 0.80596 0.83452 0.80334 1.91000 1.70564 1.44630 1.34076 1.19495 0.98680 1.00280 0.98566 1.22112 0.96574 0.90832 0.95637 1.21676 0.93783 0.98515 0.99977 1.22147 0.96787 0.94520 0.89640 1.19006 0.98612 1.01806 0.95893 1.20879 0.78940 0.76750 0.85635 1.90940 1.71589 1.44983 1.37004 1.84460 1.43666 1.52504 1.50395 1.21302 0.90606 0.94365 0.96871 0.92258 0.96315 0.97708 0.85016 0.82725 0.70887 0.80997 0.79386 0.80644 0.70183 0.85812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.43 13.29 21.45 0.28 -57.14 16 2 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 3 Si 0.97 44.27 29.54 68.60 2.03 46.30 16 4 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 5 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 6 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 7 C -0.54 -30.94 9.11 25.60 0.23 -30.70 16 8 H 0.07 3.90 7.74 -2.91 -0.02 3.87 16 9 C 0.02 1.21 4.98 29.85 0.15 1.36 16 10 C -0.58 -23.22 5.82 71.98 0.42 -22.80 16 11 S 2.60 93.50 5.11 -56.49 -0.29 93.21 16 12 O -0.96 -36.27 18.08 -127.65 -2.31 -38.58 16 13 O -0.98 -44.00 17.03 -120.71 -2.06 -46.06 16 14 N -1.03 -24.19 5.55 -175.60 -0.98 -25.17 16 15 C 0.58 15.69 7.51 86.79 0.65 16.34 16 16 O -0.53 -19.68 14.44 12.54 0.18 -19.50 16 17 C -0.17 -3.14 5.87 -20.12 -0.12 -3.26 16 18 C -0.03 -0.29 9.54 22.59 0.22 -0.07 16 19 C -0.12 -0.49 10.02 22.19 0.22 -0.26 16 20 C -0.01 -0.09 9.61 22.59 0.22 0.12 16 21 C -0.15 -2.41 5.87 -20.13 -0.12 -2.52 16 22 C 0.53 9.31 8.27 70.34 0.58 9.89 16 23 O -0.55 -14.73 17.13 19.95 0.34 -14.39 16 24 O -0.50 -4.21 12.67 -56.16 -0.71 -4.92 16 25 C -0.01 -0.26 9.14 22.80 0.21 -0.05 16 26 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 27 H 0.02 1.04 8.14 -2.38 -0.02 1.02 16 28 H 0.00 0.27 8.14 -2.39 -0.02 0.25 16 29 H 0.13 5.31 7.19 -2.39 -0.02 5.29 16 30 H 0.15 5.04 8.14 -2.39 -0.02 5.02 16 31 H 0.45 5.62 6.81 -96.74 -0.66 4.96 16 32 H 0.17 0.26 6.39 -2.91 -0.02 0.24 16 33 H 0.19 -0.78 8.06 -2.91 -0.02 -0.80 16 34 H 0.18 0.24 7.60 -2.91 -0.02 0.22 16 35 H 0.44 0.25 9.11 -74.06 -0.67 -0.43 16 36 H 0.12 3.44 7.23 -2.91 -0.02 3.42 16 Total: -1.00 -92.88 338.22 -0.55 -93.43 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: -0.17 Total: 4.43 kcal Atomic # 6 Polarization: -34.74 SS G_CDS: 3.12 Total: -31.62 kcal Atomic # 7 Polarization: -81.62 SS G_CDS: -0.69 Total: -82.31 kcal Atomic # 8 Polarization: -118.90 SS G_CDS: -4.55 Total: -123.45 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Atomic # 16 Polarization: 93.50 SS G_CDS: -0.29 Total: 93.21 kcal Total: -92.88 -0.55 -93.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821319994.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.162 kcal (2) G-P(sol) polarization free energy of solvation -92.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -208.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -208.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds