Wall clock time and date at job start Fri Apr 10 2020 14:49:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86803 * 120.00118 * 2 1 4 4 H 1.48500 * 109.47067 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47481 * 300.00200 * 3 2 1 6 6 H 1.48499 * 109.46901 * 60.00228 * 3 2 1 7 7 C 1.37882 * 120.00181 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99916 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99578 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47135 * 179.97438 * 9 7 2 11 11 S 1.81397 * 109.47353 * 179.97438 * 10 9 7 12 12 O 1.42101 * 110.54394 * 68.37495 * 11 10 9 13 13 O 1.42102 * 110.54376 * 291.62681 * 11 10 9 14 14 N 1.65596 * 104.45259 * 180.02562 * 11 10 9 15 15 C 1.34780 * 119.99654 * 64.99686 * 14 11 10 16 16 O 1.21523 * 120.00269 * 0.02562 * 15 14 11 17 17 C 1.48049 * 119.99747 * 180.02562 * 15 14 11 18 18 C 1.39556 * 119.99456 * 180.02562 * 17 15 14 19 19 C 1.37808 * 120.00467 * 180.27748 * 18 17 15 20 20 C 1.39608 * 119.99696 * 359.50803 * 19 18 17 21 21 C 1.47922 * 120.00884 * 180.21094 * 20 19 18 22 22 O 1.21442 * 120.00032 * 180.27918 * 21 20 19 23 23 O 1.34694 * 119.99998 * 0.27445 * 21 20 19 24 24 C 1.39608 * 119.98394 * 0.49160 * 20 19 18 25 25 C 1.37810 * 119.99333 * 359.73879 * 24 20 19 26 26 H 0.97008 * 120.00009 * 359.97438 * 1 2 3 27 27 H 1.09006 * 109.47758 * 59.99864 * 9 7 2 28 28 H 1.09002 * 109.47140 * 299.99592 * 9 7 2 29 29 H 1.09005 * 109.46764 * 60.00021 * 10 9 7 30 30 H 1.09002 * 109.46977 * 299.99941 * 10 9 7 31 31 H 0.97000 * 120.00011 * 245.00414 * 14 11 10 32 32 H 1.08002 * 119.99424 * 359.97438 * 18 17 15 33 33 H 1.07998 * 120.00497 * 179.71458 * 19 18 17 34 34 H 0.96695 * 116.99830 * 179.97438 * 23 21 20 35 35 H 1.08001 * 119.99810 * 179.72692 * 24 20 19 36 36 H 1.07998 * 119.99428 * 180.02562 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2452 -3.6621 -0.0027 11 16 1.3382 -5.2330 -0.0034 12 8 0.6638 -5.4190 -1.2402 13 8 0.6646 -5.4204 1.2337 14 7 2.5203 -6.3927 -0.0038 15 6 3.3467 -6.5129 1.0541 16 8 3.2242 -5.7705 2.0084 17 6 4.4039 -7.5493 1.0535 18 6 5.2593 -7.6740 2.1492 19 6 6.2471 -8.6349 2.1464 20 6 6.3855 -9.4904 1.0519 21 6 7.4427 -10.5250 1.0507 22 8 7.5663 -11.2659 0.0964 23 8 8.2685 -10.6454 2.1081 24 6 5.5297 -9.3655 -0.0439 25 6 4.5451 -8.4013 -0.0427 26 1 -0.4850 0.8401 0.0004 27 1 0.6246 -2.5563 -0.8920 28 1 0.6240 -2.5574 0.8881 29 1 2.8718 -3.6051 0.8874 30 1 2.8718 -3.6036 -0.8927 31 1 2.6179 -6.9855 -0.7654 32 1 5.1502 -7.0141 2.9971 33 1 6.9120 -8.7283 2.9923 34 1 8.9434 -11.3362 2.0615 35 1 5.6394 -10.0243 -0.8926 36 1 3.8827 -8.3049 -0.8903 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821320850.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:49:09 Heat of formation + Delta-G solvation = -176.439247 kcal Electronic energy + Delta-G solvation = -24412.547149 eV Core-core repulsion = 20375.006455 eV Total energy + Delta-G solvation = -4037.540694 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.070 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.12192 -40.41039 -38.60381 -36.77019 -36.62707 -35.69697 -34.77623 -33.93265 -32.08395 -31.58508 -31.21543 -26.28294 -25.64149 -23.36139 -22.96271 -21.72590 -21.24143 -19.63238 -18.79177 -18.64756 -17.79353 -17.60917 -16.59729 -16.17702 -15.90679 -15.88537 -15.43370 -15.07762 -15.01377 -14.94897 -14.56209 -14.20208 -13.92795 -13.50463 -13.16783 -13.02188 -12.58007 -12.43724 -12.09971 -11.84989 -11.78896 -11.72463 -11.68690 -11.22456 -11.12263 -11.05487 -10.97146 -10.59098 -10.40142 -10.38050 -9.76286 -9.70930 -9.63532 -9.20708 -8.52247 -6.14286 -4.19763 -0.27311 0.40875 0.74701 1.63315 2.36719 2.40569 2.59486 3.25178 3.25477 3.32436 3.36034 3.78016 4.01229 4.14540 4.31514 4.35815 4.46348 4.54771 4.63611 4.69473 4.87741 5.08181 5.21253 5.39794 5.53236 5.55085 5.62838 5.66933 5.72108 5.91352 6.12437 6.40482 6.49263 7.23367 7.26395 7.31871 7.31903 7.78986 8.14161 8.83475 9.45021 10.96814 Molecular weight = 327.07amu Principal moments of inertia in cm(-1) A = 0.020070 B = 0.002580 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.769248 B =10850.415895 C =11603.645889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.901 3.099 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.519 4.519 8 H 0.063 0.937 9 C 0.029 3.971 10 C -0.574 4.574 11 S 2.564 3.436 12 O -0.951 6.951 13 O -0.935 6.935 14 N -1.055 6.055 15 C 0.577 3.423 16 O -0.476 6.476 17 C -0.100 4.100 18 C -0.068 4.068 19 C -0.068 4.068 20 C -0.104 4.104 21 C 0.527 3.473 22 O -0.509 6.509 23 O -0.510 6.510 24 C -0.061 4.061 25 C -0.093 4.093 26 H 0.265 0.735 27 H 0.035 0.965 28 H 0.037 0.963 29 H 0.132 0.868 30 H 0.123 0.877 31 H 0.427 0.573 32 H 0.153 0.847 33 H 0.149 0.851 34 H 0.417 0.583 35 H 0.148 0.852 36 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.284 -21.385 1.565 26.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.145 4.145 3 Si 0.729 3.271 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.558 4.558 8 H 0.081 0.919 9 C -0.010 4.010 10 C -0.709 4.709 11 S 2.665 3.335 12 O -0.941 6.941 13 O -0.925 6.925 14 N -0.816 5.816 15 C 0.363 3.637 16 O -0.347 6.347 17 C -0.105 4.105 18 C -0.087 4.087 19 C -0.086 4.086 20 C -0.105 4.105 21 C 0.371 3.629 22 O -0.398 6.398 23 O -0.322 6.322 24 C -0.079 4.079 25 C -0.112 4.112 26 H 0.075 0.925 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.150 0.850 30 H 0.141 0.859 31 H 0.263 0.737 32 H 0.170 0.830 33 H 0.167 0.833 34 H 0.277 0.723 35 H 0.166 0.834 36 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 13.832 -20.869 2.048 25.120 hybrid contribution 1.485 0.350 -0.554 1.623 sum 15.317 -20.518 1.494 25.649 Atomic orbital electron populations 1.69960 1.06118 1.27155 1.49565 1.25068 0.94997 0.99582 0.94852 0.86388 0.79934 0.83048 0.77765 1.19613 1.20802 1.20751 1.21007 0.93142 0.89524 1.52162 0.91885 1.19007 0.92620 0.90295 0.99090 1.30342 1.13730 1.15927 1.10893 1.06818 0.74902 0.77231 0.74571 1.93599 1.70232 1.85269 1.45033 1.93605 1.70113 1.84296 1.44489 1.55435 1.49084 1.50532 1.26553 1.18186 0.80573 0.83547 0.81369 1.90998 1.69167 1.42362 1.32199 1.20199 0.97059 0.96951 0.96324 1.21408 0.92414 0.97080 0.97785 1.21503 0.96889 0.92714 0.97465 1.19276 0.96731 0.97211 0.97274 1.20888 0.80207 0.82269 0.79525 1.90909 1.70388 1.43308 1.35162 1.84545 1.45422 1.58276 1.43917 1.21216 0.92484 0.96955 0.97289 1.21324 0.97918 0.94159 0.97758 0.92537 0.94710 0.94509 0.84986 0.85903 0.73668 0.82977 0.83317 0.72343 0.83449 0.84015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.33 13.29 55.43 0.74 -25.60 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 4 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.52 -14.30 9.11 -34.44 -0.31 -14.61 16 8 H 0.06 1.65 7.74 -52.49 -0.41 1.25 16 9 C 0.03 0.74 4.98 -27.88 -0.14 0.60 16 10 C -0.57 -11.01 5.82 37.16 0.22 -10.79 16 11 S 2.56 44.75 5.11 -107.50 -0.55 44.20 16 12 O -0.95 -18.09 18.08 -57.54 -1.04 -19.13 16 13 O -0.93 -19.81 17.03 -64.80 -1.10 -20.92 16 14 N -1.05 -12.72 5.55 30.58 0.17 -12.55 16 15 C 0.58 7.36 7.52 -12.23 -0.09 7.27 16 16 O -0.48 -7.80 14.43 -11.81 -0.17 -7.97 16 17 C -0.10 -0.95 5.88 -104.89 -0.62 -1.56 16 18 C -0.07 -0.57 9.58 -39.25 -0.38 -0.95 16 19 C -0.07 -0.46 9.60 -39.23 -0.38 -0.84 16 20 C -0.10 -0.78 5.88 -104.91 -0.62 -1.39 16 21 C 0.53 4.01 8.28 34.70 0.29 4.30 16 22 O -0.51 -5.24 17.12 -19.22 -0.33 -5.57 16 23 O -0.51 -2.46 12.67 -40.48 -0.51 -2.98 16 24 C -0.06 -0.43 9.58 -39.23 -0.38 -0.81 16 25 C -0.09 -0.66 9.53 -39.25 -0.37 -1.03 16 26 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 27 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.13 2.47 7.19 -51.92 -0.37 2.10 16 30 H 0.12 2.01 8.14 -51.92 -0.42 1.59 16 31 H 0.43 3.34 6.81 -34.47 -0.23 3.10 16 32 H 0.15 1.24 7.64 -52.49 -0.40 0.84 16 33 H 0.15 0.74 7.60 -52.49 -0.40 0.34 16 34 H 0.42 0.23 9.11 45.56 0.42 0.65 16 35 H 0.15 0.88 7.64 -52.49 -0.40 0.48 16 36 H 0.14 0.62 6.39 -52.49 -0.34 0.28 16 LS Contribution 338.20 15.07 5.10 5.10 Total: -1.00 -38.84 338.20 -8.14 -46.97 By element: Atomic # 1 Polarization: 3.12 SS G_CDS: -2.54 Total: 0.58 kcal Atomic # 6 Polarization: -15.42 SS G_CDS: -2.87 Total: -18.29 kcal Atomic # 7 Polarization: -39.05 SS G_CDS: 0.91 Total: -38.15 kcal Atomic # 8 Polarization: -53.41 SS G_CDS: -3.16 Total: -56.57 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: 44.75 SS G_CDS: -0.55 Total: 44.20 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -38.84 -8.14 -46.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821320850.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.466 kcal (2) G-P(sol) polarization free energy of solvation -38.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds