Wall clock time and date at job start Fri Apr 10 2020 14:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86803 * 120.00118 * 2 1 4 4 H 1.48500 * 109.47067 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47481 * 300.00200 * 3 2 1 6 6 H 1.48499 * 109.46901 * 60.00228 * 3 2 1 7 7 C 1.37882 * 120.00181 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99916 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99578 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47135 * 179.97438 * 9 7 2 11 11 S 1.81397 * 109.47353 * 179.97438 * 10 9 7 12 12 O 1.42101 * 110.54394 * 68.37495 * 11 10 9 13 13 O 1.42102 * 110.54376 * 291.62681 * 11 10 9 14 14 N 1.65596 * 104.45259 * 180.02562 * 11 10 9 15 15 C 1.34780 * 119.99654 * 64.99686 * 14 11 10 16 16 O 1.21523 * 120.00269 * 0.02562 * 15 14 11 17 17 C 1.48049 * 119.99747 * 180.02562 * 15 14 11 18 18 C 1.39556 * 119.99456 * 180.02562 * 17 15 14 19 19 C 1.37808 * 120.00467 * 180.27748 * 18 17 15 20 20 C 1.39608 * 119.99696 * 359.50803 * 19 18 17 21 21 C 1.47922 * 120.00884 * 180.21094 * 20 19 18 22 22 O 1.21442 * 120.00032 * 180.27918 * 21 20 19 23 23 O 1.34694 * 119.99998 * 0.27445 * 21 20 19 24 24 C 1.39608 * 119.98394 * 0.49160 * 20 19 18 25 25 C 1.37810 * 119.99333 * 359.73879 * 24 20 19 26 26 H 0.97008 * 120.00009 * 359.97438 * 1 2 3 27 27 H 1.09006 * 109.47758 * 59.99864 * 9 7 2 28 28 H 1.09002 * 109.47140 * 299.99592 * 9 7 2 29 29 H 1.09005 * 109.46764 * 60.00021 * 10 9 7 30 30 H 1.09002 * 109.46977 * 299.99941 * 10 9 7 31 31 H 0.97000 * 120.00011 * 245.00414 * 14 11 10 32 32 H 1.08002 * 119.99424 * 359.97438 * 18 17 15 33 33 H 1.07998 * 120.00497 * 179.71458 * 19 18 17 34 34 H 0.96695 * 116.99830 * 179.97438 * 23 21 20 35 35 H 1.08001 * 119.99810 * 179.72692 * 24 20 19 36 36 H 1.07998 * 119.99428 * 180.02562 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2452 -3.6621 -0.0027 11 16 1.3382 -5.2330 -0.0034 12 8 0.6638 -5.4190 -1.2402 13 8 0.6646 -5.4204 1.2337 14 7 2.5203 -6.3927 -0.0038 15 6 3.3467 -6.5129 1.0541 16 8 3.2242 -5.7705 2.0084 17 6 4.4039 -7.5493 1.0535 18 6 5.2593 -7.6740 2.1492 19 6 6.2471 -8.6349 2.1464 20 6 6.3855 -9.4904 1.0519 21 6 7.4427 -10.5250 1.0507 22 8 7.5663 -11.2659 0.0964 23 8 8.2685 -10.6454 2.1081 24 6 5.5297 -9.3655 -0.0439 25 6 4.5451 -8.4013 -0.0427 26 1 -0.4850 0.8401 0.0004 27 1 0.6246 -2.5563 -0.8920 28 1 0.6240 -2.5574 0.8881 29 1 2.8718 -3.6051 0.8874 30 1 2.8718 -3.6036 -0.8927 31 1 2.6179 -6.9855 -0.7654 32 1 5.1502 -7.0141 2.9971 33 1 6.9120 -8.7283 2.9923 34 1 8.9434 -11.3362 2.0615 35 1 5.6394 -10.0243 -0.8926 36 1 3.8827 -8.3049 -0.8903 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821320850.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:49:08 Heat of formation + Delta-G solvation = -206.933690 kcal Electronic energy + Delta-G solvation = -24413.869487 eV Core-core repulsion = 20375.006455 eV Total energy + Delta-G solvation = -4038.863032 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.070 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -41.86334 -41.19691 -39.32349 -38.29388 -37.25552 -37.14619 -36.00096 -35.82143 -33.18280 -32.74900 -32.16441 -27.66985 -26.97307 -23.94132 -23.92150 -23.47323 -21.97069 -20.85567 -19.81489 -19.27248 -19.09302 -18.41512 -18.31041 -17.38746 -16.88772 -16.72494 -16.64369 -16.51048 -16.29095 -15.84728 -15.64712 -15.20558 -14.76515 -14.56348 -14.48808 -13.83630 -13.81166 -13.72939 -13.64798 -13.38853 -13.27692 -12.96910 -12.83798 -12.61764 -12.35281 -12.27461 -12.25476 -12.06028 -11.87406 -11.75827 -11.58096 -11.08329 -10.66067 -10.36700 -10.18770 -8.27193 -6.40856 -1.06241 -0.92443 0.20014 0.86963 1.32148 1.40992 1.41837 1.55134 1.63330 1.95108 2.36894 2.52140 2.64776 2.88114 3.06559 3.14562 3.59528 3.71378 3.80198 3.93641 3.99697 4.04722 4.09186 4.31151 4.55067 4.69671 4.87507 4.97642 5.02944 5.15754 5.23510 5.24695 5.51662 5.53935 5.61235 5.67224 6.04132 6.26399 6.72109 6.90744 7.29106 8.85354 Molecular weight = 327.07amu Principal moments of inertia in cm(-1) A = 0.020070 B = 0.002580 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.769248 B =10850.415895 C =11603.645889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.003 4.003 3 Si 0.975 3.025 4 H -0.257 1.257 5 H -0.275 1.275 6 H -0.279 1.279 7 C -0.538 4.538 8 H 0.074 0.926 9 C 0.022 3.978 10 C -0.578 4.578 11 S 2.601 3.399 12 O -0.966 6.966 13 O -0.975 6.975 14 N -1.034 6.034 15 C 0.578 3.422 16 O -0.517 6.517 17 C -0.115 4.115 18 C -0.074 4.074 19 C -0.059 4.059 20 C -0.107 4.107 21 C 0.534 3.466 22 O -0.539 6.539 23 O -0.502 6.502 24 C -0.062 4.062 25 C -0.083 4.083 26 H 0.268 0.732 27 H 0.016 0.984 28 H 0.006 0.994 29 H 0.136 0.864 30 H 0.153 0.847 31 H 0.448 0.552 32 H 0.150 0.850 33 H 0.169 0.831 34 H 0.436 0.564 35 H 0.160 0.840 36 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.759 -22.462 1.050 28.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.202 4.202 3 Si 0.798 3.202 4 H -0.180 1.180 5 H -0.201 1.201 6 H -0.205 1.205 7 C -0.578 4.578 8 H 0.093 0.907 9 C -0.017 4.017 10 C -0.711 4.711 11 S 2.700 3.300 12 O -0.956 6.956 13 O -0.965 6.965 14 N -0.801 5.801 15 C 0.367 3.633 16 O -0.391 6.391 17 C -0.120 4.120 18 C -0.093 4.093 19 C -0.077 4.077 20 C -0.109 4.109 21 C 0.379 3.621 22 O -0.431 6.431 23 O -0.316 6.316 24 C -0.080 4.080 25 C -0.101 4.101 26 H 0.077 0.923 27 H 0.035 0.965 28 H 0.024 0.976 29 H 0.154 0.846 30 H 0.171 0.829 31 H 0.290 0.710 32 H 0.167 0.833 33 H 0.186 0.814 34 H 0.299 0.701 35 H 0.178 0.822 36 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 16.335 -21.963 1.519 27.414 hybrid contribution 0.807 0.528 -0.361 1.030 sum 17.142 -21.435 1.158 27.471 Atomic orbital electron populations 1.70096 1.07995 1.28326 1.50790 1.26107 0.95900 1.03845 0.94337 0.85251 0.79109 0.77956 0.77850 1.18046 1.20097 1.20469 1.21502 0.93946 0.90689 1.51618 0.90749 1.18843 0.93472 0.92652 0.96761 1.30242 1.12884 1.15313 1.12675 1.05396 0.74577 0.76770 0.73231 1.93574 1.71109 1.85474 1.45447 1.93556 1.71664 1.84849 1.46393 1.54828 1.48010 1.49621 1.27658 1.18727 0.80595 0.83558 0.80381 1.90985 1.70249 1.44173 1.33669 1.19994 0.96832 0.97157 0.98017 1.21487 0.92712 0.97519 0.97559 1.21621 0.96458 0.91760 0.97889 1.19482 0.96740 0.97120 0.97537 1.20859 0.80181 0.81658 0.79433 1.90905 1.71324 1.44490 1.36397 1.84507 1.45524 1.58998 1.42567 1.21404 0.92124 0.96896 0.97586 1.21568 0.97955 0.92989 0.97596 0.92317 0.96543 0.97557 0.84561 0.82866 0.71021 0.83263 0.81376 0.70094 0.82243 0.81298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.63 13.29 21.45 0.28 -56.35 16 2 C 0.00 -0.19 5.46 84.66 0.46 0.27 16 3 Si 0.97 43.44 29.54 68.60 2.03 45.46 16 4 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 5 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 6 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 7 C -0.54 -30.01 9.11 25.60 0.23 -29.78 16 8 H 0.07 3.86 7.74 -2.91 -0.02 3.84 16 9 C 0.02 1.14 4.98 29.85 0.15 1.29 16 10 C -0.58 -22.21 5.82 71.98 0.42 -21.79 16 11 S 2.60 90.53 5.11 -56.49 -0.29 90.24 16 12 O -0.97 -36.25 18.08 -127.65 -2.31 -38.56 16 13 O -0.97 -42.19 17.03 -120.71 -2.06 -44.25 16 14 N -1.03 -23.38 5.55 -175.46 -0.97 -24.35 16 15 C 0.58 14.14 7.52 86.85 0.65 14.79 16 16 O -0.52 -16.97 14.43 12.62 0.18 -16.79 16 17 C -0.11 -1.96 5.88 -20.04 -0.12 -2.08 16 18 C -0.07 -1.13 9.58 22.49 0.22 -0.92 16 19 C -0.06 -0.68 9.60 22.50 0.22 -0.46 16 20 C -0.11 -1.34 5.88 -20.05 -0.12 -1.46 16 21 C 0.53 6.90 8.28 70.39 0.58 7.48 16 22 O -0.54 -10.13 17.12 20.02 0.34 -9.79 16 23 O -0.50 -3.50 12.67 -56.04 -0.71 -4.20 16 24 C -0.06 -0.70 9.58 22.50 0.22 -0.49 16 25 C -0.08 -0.94 9.53 22.49 0.21 -0.72 16 26 H 0.27 15.15 8.31 -92.70 -0.77 14.38 16 27 H 0.02 0.90 8.14 -2.38 -0.02 0.88 16 28 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 29 H 0.14 5.13 7.19 -2.39 -0.02 5.11 16 30 H 0.15 4.82 8.14 -2.39 -0.02 4.80 16 31 H 0.45 5.83 6.81 -96.75 -0.66 5.17 16 32 H 0.15 2.34 7.64 -2.91 -0.02 2.32 16 33 H 0.17 1.21 7.60 -2.91 -0.02 1.19 16 34 H 0.44 -0.68 9.11 -74.06 -0.67 -1.35 16 35 H 0.16 1.46 7.64 -2.91 -0.02 1.44 16 36 H 0.17 0.84 6.39 -2.91 -0.02 0.82 16 Total: -1.00 -85.70 338.20 -0.54 -86.25 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -0.17 Total: 6.20 kcal Atomic # 6 Polarization: -36.99 SS G_CDS: 3.12 Total: -33.86 kcal Atomic # 7 Polarization: -80.01 SS G_CDS: -0.69 Total: -80.70 kcal Atomic # 8 Polarization: -109.04 SS G_CDS: -4.55 Total: -113.59 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.46 kcal Atomic # 16 Polarization: 90.53 SS G_CDS: -0.29 Total: 90.24 kcal Total: -85.70 -0.54 -86.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821320850.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.685 kcal (2) G-P(sol) polarization free energy of solvation -85.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -206.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -206.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds