Wall clock time and date at job start Fri Apr 10 2020 14:48:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86795 * 120.00084 * 2 1 4 4 H 1.48491 * 109.47403 * 270.00315 * 3 2 1 5 5 H 1.48505 * 109.46776 * 30.00568 * 3 2 1 6 6 H 1.48507 * 109.47144 * 149.99934 * 3 2 1 7 7 C 1.37877 * 119.99644 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99466 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00516 * 359.97438 * 7 2 1 10 10 S 1.81399 * 109.47276 * 179.97438 * 9 7 2 11 11 O 1.42096 * 110.54079 * 68.37612 * 10 9 7 12 12 O 1.42097 * 110.54496 * 291.62596 * 10 9 7 13 13 N 1.65597 * 104.44812 * 179.97438 * 10 9 7 14 14 C 1.34783 * 119.99707 * 65.00433 * 13 10 9 15 15 O 1.21581 * 120.00129 * 359.97438 * 14 13 10 16 16 C 1.47546 * 119.99850 * 179.97438 * 14 13 10 17 17 C 1.39768 * 120.13969 * 0.02562 * 16 14 13 18 18 C 1.37753 * 119.94978 * 179.97438 * 17 16 14 19 19 C 1.38485 * 120.33014 * 0.07341 * 18 17 16 20 20 C 1.38587 * 120.41133 * 0.26005 * 19 18 17 21 21 C 1.38995 * 119.90830 * 359.36420 * 20 19 18 22 22 O 1.35811 * 120.87226 * 180.54517 * 21 20 19 23 23 C 1.43172 * 116.74186 * 342.97649 * 22 21 20 24 24 C 1.53467 * 108.25096 * 46.15958 * 23 22 21 25 25 O 1.36134 * 119.37109 * 179.97438 * 20 19 18 26 26 H 0.97001 * 120.00494 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.46736 * 60.00241 * 9 7 2 28 28 H 1.08999 * 109.47094 * 300.00278 * 9 7 2 29 29 H 0.96998 * 120.00144 * 244.99854 * 13 10 9 30 30 H 1.07998 * 120.02379 * 359.96318 * 17 16 14 31 31 H 1.07998 * 119.82950 * 180.02562 * 18 17 16 32 32 H 1.08002 * 119.79131 * 179.97438 * 19 18 17 33 33 H 1.08997 * 109.70808 * 165.84730 * 23 22 21 34 34 H 1.08999 * 109.70816 * 286.47297 * 23 22 21 35 35 H 1.09003 * 109.70919 * 60.01549 * 24 23 22 36 36 H 1.08996 * 109.71208 * 180.59972 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 16 2.4298 -3.8780 -0.0021 11 8 3.1274 -3.9389 1.2343 12 8 3.1256 -3.9378 -1.2396 13 7 1.4794 -5.2341 -0.0012 14 6 0.6876 -5.5027 -1.0583 15 8 0.6707 -4.7491 -2.0123 16 6 -0.1588 -6.7113 -1.0579 17 6 -0.1421 -7.5793 0.0375 18 6 -0.9343 -8.7063 0.0340 19 6 -1.7478 -8.9859 -1.0512 20 6 -1.7704 -8.1387 -2.1478 21 6 -0.9825 -6.9937 -2.1553 22 8 -0.9977 -6.1442 -3.2148 23 6 -1.5418 -6.6503 -4.4386 24 6 -2.8591 -7.3694 -4.1178 25 8 -2.5777 -8.4342 -3.2033 26 1 -0.4851 0.8400 0.0004 27 1 0.6241 -2.5567 -0.8903 28 1 0.6246 -2.5572 0.8896 29 1 1.4926 -5.8352 0.7600 30 1 0.4915 -7.3667 0.8858 31 1 -0.9202 -9.3754 0.8816 32 1 -2.3651 -9.8721 -1.0449 33 1 -1.7312 -5.8255 -5.1255 34 1 -0.8406 -7.3520 -4.8902 35 1 -3.5586 -6.6690 -3.6613 36 1 -3.2895 -7.7743 -5.0337 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821582632.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:48:37 Heat of formation + Delta-G solvation = -149.197501 kcal Electronic energy + Delta-G solvation = -25819.750454 eV Core-core repulsion = 21783.391050 eV Total energy + Delta-G solvation = -4036.359403 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.070 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.57322 -39.66559 -37.71811 -37.31516 -36.19039 -35.13743 -34.12593 -33.32248 -31.42751 -31.05911 -29.02168 -28.67873 -25.15132 -24.51800 -23.49484 -21.39199 -21.25832 -19.38914 -18.97204 -17.90709 -17.56707 -17.07206 -16.70618 -16.33759 -15.79789 -15.56722 -15.31515 -14.94539 -14.70134 -14.66565 -14.39255 -14.33017 -14.11859 -14.04994 -13.24666 -12.52688 -12.46972 -12.19910 -12.11261 -11.84683 -11.46577 -11.43410 -11.30621 -11.25871 -11.16232 -10.91880 -10.88267 -10.62296 -10.42103 -9.93842 -9.75482 -9.13462 -8.94326 -8.68029 -8.33195 -6.30085 -4.41230 0.54772 1.04421 1.07476 2.60441 2.82087 2.99193 3.18025 3.24307 3.29521 3.34861 3.58331 3.91308 4.20930 4.28301 4.55040 4.56650 4.58263 4.66246 4.78687 4.88665 4.97714 5.02585 5.16940 5.20715 5.25722 5.33942 5.40441 5.72956 5.76994 6.06344 6.27410 6.60592 6.65981 6.81505 7.03512 7.17354 7.44742 7.76391 7.86662 8.59921 9.25799 10.81734 Molecular weight = 327.07amu Principal moments of inertia in cm(-1) A = 0.017600 B = 0.003738 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.534359 B = 7489.005446 C = 8352.946897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.077 3.923 3 Si 0.907 3.093 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.535 4.535 8 H 0.071 0.929 9 C -0.404 4.404 10 S 2.555 3.445 11 O -0.969 6.969 12 O -0.952 6.952 13 N -1.058 6.058 14 C 0.577 3.423 15 O -0.463 6.463 16 C -0.137 4.137 17 C -0.077 4.077 18 C -0.126 4.126 19 C -0.086 4.086 20 C 0.036 3.964 21 C 0.115 3.885 22 O -0.268 6.268 23 C 0.014 3.986 24 C 0.019 3.981 25 O -0.306 6.306 26 H 0.269 0.731 27 H 0.099 0.901 28 H 0.086 0.914 29 H 0.421 0.579 30 H 0.140 0.860 31 H 0.140 0.860 32 H 0.139 0.861 33 H 0.127 0.873 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.152 -19.133 -3.355 21.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.129 4.129 3 Si 0.732 3.268 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.190 1.190 7 C -0.574 4.574 8 H 0.089 0.911 9 C -0.541 4.541 10 S 2.657 3.343 11 O -0.960 6.960 12 O -0.942 6.942 13 N -0.819 5.819 14 C 0.364 3.636 15 O -0.333 6.333 16 C -0.143 4.143 17 C -0.096 4.096 18 C -0.144 4.144 19 C -0.104 4.104 20 C -0.009 4.009 21 C 0.067 3.933 22 O -0.180 6.180 23 C -0.061 4.061 24 C -0.057 4.057 25 O -0.221 6.221 26 H 0.078 0.922 27 H 0.117 0.883 28 H 0.104 0.896 29 H 0.256 0.744 30 H 0.157 0.843 31 H 0.158 0.842 32 H 0.157 0.843 33 H 0.145 0.855 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -7.384 -18.506 -4.171 20.357 hybrid contribution -0.397 0.678 0.246 0.824 sum -7.782 -17.828 -3.925 19.844 Atomic orbital electron populations 1.69963 1.06271 1.27699 1.47348 1.24919 0.95025 0.99558 0.93414 0.86339 0.79958 0.81656 0.78799 1.19847 1.20606 1.19046 1.20296 0.92747 0.88484 1.55891 0.91119 1.27602 1.09887 1.09095 1.07494 1.07092 0.77214 0.75884 0.74071 1.93516 1.71129 1.85979 1.45336 1.93528 1.70855 1.85177 1.44636 1.55434 1.56220 1.43862 1.26376 1.17784 0.78721 0.85476 0.81654 1.91025 1.62892 1.47454 1.31954 1.19315 1.00749 0.98520 0.95696 1.21182 0.98428 0.93369 0.96618 1.20818 0.97269 0.97856 0.98494 1.20616 0.99915 0.99631 0.90283 1.18771 0.94988 0.96434 0.90668 1.18930 0.94544 0.90599 0.89201 1.86647 1.77633 1.36250 1.17457 1.23772 0.94806 1.01482 0.86067 1.23702 0.97321 0.90351 0.94295 1.86298 1.64224 1.36801 1.34785 0.92183 0.88267 0.89638 0.74385 0.84279 0.84171 0.84306 0.85492 0.90195 0.90121 0.85849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.44 13.29 55.43 0.74 -24.70 16 2 C 0.08 2.19 5.46 -17.82 -0.10 2.09 16 3 Si 0.91 21.38 29.54 -169.99 -5.02 16.36 16 4 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.53 -15.25 9.13 -34.44 -0.31 -15.56 16 8 H 0.07 1.96 7.71 -52.48 -0.40 1.56 16 9 C -0.40 -10.33 5.64 36.01 0.20 -10.12 16 10 S 2.55 57.23 5.03 -107.50 -0.54 56.69 16 11 O -0.97 -22.49 18.08 -57.54 -1.04 -23.53 16 12 O -0.95 -24.39 17.04 -64.78 -1.10 -25.49 16 13 N -1.06 -18.17 5.55 30.46 0.17 -18.00 16 14 C 0.58 10.65 7.50 -12.46 -0.09 10.56 16 15 O -0.46 -10.42 13.20 -24.18 -0.32 -10.74 16 16 C -0.14 -2.02 5.89 -104.84 -0.62 -2.64 16 17 C -0.08 -0.82 9.53 -39.19 -0.37 -1.19 16 18 C -0.13 -1.08 10.02 -39.67 -0.40 -1.48 16 19 C -0.09 -0.81 9.95 -39.36 -0.39 -1.20 16 20 C 0.04 0.44 6.49 -39.17 -0.25 0.18 16 21 C 0.12 1.68 6.51 -38.61 -0.25 1.43 16 22 O -0.27 -4.17 8.42 -47.39 -0.40 -4.57 16 23 C 0.01 0.14 7.26 37.40 0.27 0.42 16 24 C 0.02 0.15 7.26 37.40 0.27 0.43 16 25 O -0.31 -3.31 10.42 -33.00 -0.34 -3.65 16 26 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 27 H 0.10 2.67 7.19 -51.93 -0.37 2.30 16 28 H 0.09 2.10 8.14 -51.92 -0.42 1.68 16 29 H 0.42 5.25 6.81 -34.47 -0.23 5.02 16 30 H 0.14 1.08 6.40 -52.49 -0.34 0.75 16 31 H 0.14 0.74 8.06 -52.49 -0.42 0.31 16 32 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 33 H 0.13 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.12 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 325.76 15.07 4.91 4.91 Total: -1.00 -38.67 325.76 -8.44 -47.11 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -3.44 Total: 2.71 kcal Atomic # 6 Polarization: -15.05 SS G_CDS: -2.04 Total: -17.09 kcal Atomic # 7 Polarization: -43.61 SS G_CDS: 0.91 Total: -42.71 kcal Atomic # 8 Polarization: -64.77 SS G_CDS: -3.21 Total: -67.98 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: 57.23 SS G_CDS: -0.54 Total: 56.69 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -38.67 -8.44 -47.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821582632.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.091 kcal (2) G-P(sol) polarization free energy of solvation -38.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds