Wall clock time and date at job start Fri Apr 10 2020 14:48:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35902 * 117.00130 * 2 1 4 4 C 1.38730 * 120.04977 * 359.97438 * 3 2 1 5 5 C 1.38212 * 119.93502 * 180.02562 * 4 3 2 6 6 Br 1.89095 * 119.98229 * 180.02562 * 5 4 3 7 7 C 1.38376 * 120.03499 * 0.02599 * 5 4 3 8 8 C 1.38224 * 120.10161 * 359.95815 * 7 5 4 9 9 C 1.38176 * 120.06591 * 359.76252 * 8 7 5 10 10 C 1.50693 * 120.01830 * 180.27952 * 9 8 7 11 11 C 1.53005 * 109.47380 * 265.25144 * 10 9 8 12 12 C 1.53000 * 109.47134 * 179.97438 * 11 10 9 13 13 N 1.46501 * 109.46780 * 180.02562 * 12 11 10 14 14 C 1.46495 * 119.99996 * 90.00388 * 13 12 11 15 15 C 1.36941 * 120.00079 * 270.00066 * 13 12 11 16 16 H 1.07999 * 119.99920 * 23.05134 * 15 13 12 17 17 C 1.38817 * 120.00016 * 203.04552 * 15 13 12 18 18 N 1.31618 * 119.99904 * 12.93270 * 17 15 13 19 19 Si 1.86788 * 119.99941 * 192.92824 * 17 15 13 20 20 H 1.48503 * 109.47388 * 90.00290 * 19 17 15 21 21 H 1.48505 * 109.47425 * 210.00073 * 19 17 15 22 22 H 1.48501 * 109.47569 * 330.00159 * 19 17 15 23 23 H 1.09003 * 109.47456 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47397 * 60.00108 * 1 2 3 25 25 H 1.09004 * 109.46953 * 300.00349 * 1 2 3 26 26 H 1.08004 * 120.03579 * 359.97438 * 4 3 2 27 27 H 1.08004 * 119.95042 * 179.97438 * 7 5 4 28 28 H 1.08008 * 119.96616 * 180.02562 * 8 7 5 29 29 H 1.09002 * 109.47525 * 25.25042 * 10 9 8 30 30 H 1.09000 * 109.46979 * 145.25357 * 10 9 8 31 31 H 1.08998 * 109.47186 * 300.00412 * 11 10 9 32 32 H 1.09000 * 109.46891 * 60.00159 * 11 10 9 33 33 H 1.08998 * 109.47491 * 300.00311 * 12 11 10 34 34 H 1.09000 * 109.47031 * 60.00332 * 12 11 10 35 35 H 1.08998 * 109.47314 * 95.11873 * 14 13 12 36 36 H 1.08996 * 109.47183 * 215.11950 * 14 13 12 37 37 H 1.08998 * 109.47249 * 335.12424 * 14 13 12 38 38 H 0.96994 * 120.00102 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3750 -0.0005 5 6 1.9214 3.6052 -0.0011 6 35 0.8942 5.1929 -0.0011 7 6 3.3033 3.6757 -0.0016 8 6 4.0566 2.5167 -0.0008 9 6 3.4311 1.2846 0.0056 10 6 4.2534 0.0218 0.0129 11 6 4.4324 -0.4786 -1.4219 12 6 5.2678 -1.7604 -1.4144 13 7 5.4397 -2.2391 -2.7883 14 6 6.5850 -1.7888 -3.5830 15 6 4.5298 -3.1076 -3.3296 16 1 3.5273 -3.1574 -2.9308 17 6 4.8958 -3.9240 -4.3910 18 7 6.1652 -4.0550 -4.7131 19 14 3.5869 -4.8367 -5.3619 20 1 3.1303 -3.9908 -6.4939 21 1 4.1546 -6.1039 -5.8886 22 1 2.4351 -5.1412 -4.4755 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 0.5139 0.8900 26 1 0.2128 2.3201 -0.0014 27 1 3.7942 4.6378 -0.0025 28 1 5.1351 2.5743 -0.0008 29 1 5.2304 0.2268 0.4507 30 1 3.7437 -0.7402 0.6025 31 1 3.4555 -0.6836 -1.8597 32 1 4.9421 0.2834 -2.0115 33 1 6.2447 -1.5550 -0.9767 34 1 4.7585 -2.5226 -0.8247 35 1 7.3903 -2.5193 -3.5061 36 1 6.2857 -1.6864 -4.6261 37 1 6.9312 -0.8257 -3.2081 38 1 6.4210 -4.6251 -5.4550 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096009692.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:48:55 Heat of formation + Delta-G solvation = 2.123132 kcal Electronic energy + Delta-G solvation = -19658.865702 eV Core-core repulsion = 16548.429756 eV Total energy + Delta-G solvation = -3110.435946 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 327.058 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.40824 -37.63054 -36.04273 -34.09980 -31.91644 -30.69047 -30.38256 -28.97675 -27.38658 -25.86106 -25.28227 -22.56229 -22.42265 -20.93020 -20.06936 -17.94001 -16.70193 -16.45447 -15.88194 -15.79704 -14.80413 -14.55671 -14.28157 -13.80030 -13.65082 -13.51464 -13.10961 -12.79097 -12.54873 -12.08013 -11.95135 -11.81432 -11.48837 -11.13928 -11.10742 -10.78188 -10.74931 -10.52930 -10.51877 -10.46541 -10.31559 -10.05631 -9.77950 -9.64607 -8.91551 -8.47688 -8.20684 -6.63208 -5.63903 -3.10092 0.95305 1.22526 1.41631 3.18396 3.42496 3.47699 3.48686 3.50035 4.56433 4.59015 4.73001 4.88917 4.95676 5.04408 5.11969 5.38123 5.42998 5.48640 5.51948 5.56225 5.58452 5.91952 6.01539 6.02146 6.15075 6.23926 6.42321 6.51735 6.55405 6.61479 6.83808 6.98491 7.13990 7.25498 7.46374 7.80592 7.88739 8.49344 9.33031 9.97332 10.46609 11.40852 Molecular weight = 327.06amu Principal moments of inertia in cm(-1) A = 0.020295 B = 0.002793 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.322446 B =10022.323309 C =10467.733062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.300 6.300 3 C 0.137 3.863 4 C -0.182 4.182 5 C -0.062 4.062 6 Br -0.058 7.058 7 C -0.126 4.126 8 C -0.078 4.078 9 C -0.082 4.082 10 C -0.074 4.074 11 C -0.128 4.128 12 C 0.153 3.847 13 N -0.605 5.605 14 C 0.163 3.837 15 C -0.250 4.250 16 H 0.067 0.933 17 C -0.001 4.001 18 N -0.910 5.910 19 Si 0.903 3.097 20 H -0.289 1.289 21 H -0.292 1.292 22 H -0.280 1.280 23 H 0.103 0.897 24 H 0.056 0.944 25 H 0.053 0.947 26 H 0.135 0.865 27 H 0.131 0.869 28 H 0.139 0.861 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.061 0.939 32 H 0.051 0.949 33 H 0.033 0.967 34 H 0.045 0.955 35 H 0.030 0.970 36 H 0.038 0.962 37 H -0.004 1.004 38 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.425 18.662 13.064 25.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.213 6.213 3 C 0.090 3.910 4 C -0.203 4.203 5 C -0.141 4.141 6 Br 0.027 6.973 7 C -0.146 4.146 8 C -0.097 4.097 9 C -0.083 4.083 10 C -0.112 4.112 11 C -0.169 4.169 12 C 0.026 3.974 13 N -0.327 5.327 14 C 0.019 3.981 15 C -0.379 4.379 16 H 0.085 0.915 17 C -0.199 4.199 18 N -0.555 5.555 19 Si 0.733 3.267 20 H -0.216 1.216 21 H -0.218 1.218 22 H -0.205 1.205 23 H 0.121 0.879 24 H 0.074 0.926 25 H 0.072 0.928 26 H 0.153 0.847 27 H 0.149 0.851 28 H 0.156 0.844 29 H 0.088 0.912 30 H 0.094 0.906 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.051 0.949 34 H 0.064 0.936 35 H 0.048 0.952 36 H 0.057 0.943 37 H 0.015 0.985 38 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -10.642 18.931 12.916 25.268 hybrid contribution -0.819 -0.605 -0.716 1.245 sum -11.461 18.326 12.200 24.820 Atomic orbital electron populations 1.23107 0.78466 1.04350 1.01103 1.86197 1.21170 1.25788 1.88126 1.18773 0.91820 0.84057 0.96359 1.21091 1.00317 0.90805 1.08080 1.21398 0.94314 0.91101 1.07300 1.96684 1.71196 1.31661 1.97749 1.20974 0.91489 0.99401 1.02764 1.20945 1.00260 0.90386 0.98076 1.19640 0.90683 0.96766 1.01216 1.20552 0.98084 0.93004 0.99598 1.22230 1.01931 0.99596 0.93097 1.20728 0.96207 0.93195 0.87264 1.43902 1.28061 1.51791 1.08968 1.20764 0.89914 0.92882 0.94586 1.19213 0.91727 1.13350 1.13650 0.91484 1.25014 0.95797 0.98159 1.00930 1.70070 1.14068 1.41179 1.30230 0.86272 0.81075 0.79029 0.80298 1.21615 1.21809 1.20519 0.87857 0.92579 0.92828 0.84716 0.85058 0.84352 0.91225 0.90590 0.91976 0.93020 0.94853 0.93609 0.95201 0.94300 0.98495 0.93886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 101.05 0.99 1.23 16 2 O -0.30 -4.10 9.63 -19.43 -0.19 -4.29 16 3 C 0.14 1.84 6.66 -39.22 -0.26 1.58 16 4 C -0.18 -2.17 8.78 -39.41 -0.35 -2.52 16 5 C -0.06 -0.71 6.22 -39.54 -0.25 -0.96 16 6 Br -0.06 -0.59 33.70 -68.01 -2.29 -2.88 16 7 C -0.13 -1.40 9.78 -39.54 -0.39 -1.79 16 8 C -0.08 -0.91 9.68 -39.61 -0.38 -1.29 16 9 C -0.08 -1.11 5.15 -104.47 -0.54 -1.64 16 10 C -0.07 -1.06 5.07 -27.88 -0.14 -1.21 16 11 C -0.13 -2.31 5.52 -26.73 -0.15 -2.46 16 12 C 0.15 3.22 5.64 -4.04 -0.02 3.20 16 13 N -0.60 -15.75 2.92 -181.12 -0.53 -16.28 16 14 C 0.16 4.16 8.98 59.84 0.54 4.70 16 15 C -0.25 -7.08 9.65 -15.06 -0.15 -7.22 16 16 H 0.07 1.87 7.86 -52.49 -0.41 1.45 16 17 C 0.00 -0.04 5.10 -17.43 -0.09 -0.13 16 18 N -0.91 -27.24 10.71 55.49 0.59 -26.65 16 19 Si 0.90 22.35 29.57 -169.99 -5.03 17.33 16 20 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 21 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 24 H 0.06 0.50 7.66 -51.93 -0.40 0.10 16 25 H 0.05 0.41 7.66 -51.93 -0.40 0.02 16 26 H 0.14 1.36 6.30 -52.48 -0.33 1.03 16 27 H 0.13 1.20 8.06 -52.48 -0.42 0.77 16 28 H 0.14 1.34 8.06 -52.48 -0.42 0.92 16 29 H 0.07 0.87 8.05 -51.93 -0.42 0.46 16 30 H 0.08 1.11 7.69 -51.93 -0.40 0.71 16 31 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 32 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.03 0.65 8.07 -51.93 -0.42 0.23 16 34 H 0.05 0.97 8.04 -51.93 -0.42 0.55 16 35 H 0.03 0.82 7.34 -51.93 -0.38 0.44 16 36 H 0.04 1.06 7.34 -51.93 -0.38 0.68 16 37 H 0.00 -0.08 8.03 -51.93 -0.42 -0.50 16 38 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 336.80 15.07 5.08 5.08 Total: -1.00 -31.41 336.80 -9.16 -40.57 By element: Atomic # 1 Polarization: 1.25 SS G_CDS: -5.62 Total: -4.37 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: -1.18 Total: -8.51 kcal Atomic # 7 Polarization: -43.00 SS G_CDS: 0.07 Total: -42.93 kcal Atomic # 8 Polarization: -4.10 SS G_CDS: -0.19 Total: -4.29 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.03 Total: 17.33 kcal Atomic # 35 Polarization: -0.59 SS G_CDS: -2.29 Total: -2.88 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.41 -9.16 -40.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096009692.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.695 kcal (2) G-P(sol) polarization free energy of solvation -31.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds