Wall clock time and date at job start Fri Apr 10 2020 14:48:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35902 * 117.00130 * 2 1 4 4 C 1.38730 * 120.04977 * 359.97438 * 3 2 1 5 5 C 1.38212 * 119.93502 * 180.02562 * 4 3 2 6 6 Br 1.89095 * 119.98229 * 180.02562 * 5 4 3 7 7 C 1.38376 * 120.03499 * 0.02599 * 5 4 3 8 8 C 1.38224 * 120.10161 * 359.95815 * 7 5 4 9 9 C 1.38176 * 120.06591 * 359.76252 * 8 7 5 10 10 C 1.50693 * 120.01830 * 180.27952 * 9 8 7 11 11 C 1.53005 * 109.47380 * 265.25144 * 10 9 8 12 12 C 1.53000 * 109.47134 * 179.97438 * 11 10 9 13 13 N 1.46501 * 109.46780 * 180.02562 * 12 11 10 14 14 C 1.46495 * 119.99996 * 90.00388 * 13 12 11 15 15 C 1.36941 * 120.00079 * 270.00066 * 13 12 11 16 16 H 1.07999 * 119.99920 * 23.05134 * 15 13 12 17 17 C 1.38817 * 120.00016 * 203.04552 * 15 13 12 18 18 N 1.31618 * 119.99904 * 12.93270 * 17 15 13 19 19 Si 1.86788 * 119.99941 * 192.92824 * 17 15 13 20 20 H 1.48503 * 109.47388 * 90.00290 * 19 17 15 21 21 H 1.48505 * 109.47425 * 210.00073 * 19 17 15 22 22 H 1.48501 * 109.47569 * 330.00159 * 19 17 15 23 23 H 1.09003 * 109.47456 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47397 * 60.00108 * 1 2 3 25 25 H 1.09004 * 109.46953 * 300.00349 * 1 2 3 26 26 H 1.08004 * 120.03579 * 359.97438 * 4 3 2 27 27 H 1.08004 * 119.95042 * 179.97438 * 7 5 4 28 28 H 1.08008 * 119.96616 * 180.02562 * 8 7 5 29 29 H 1.09002 * 109.47525 * 25.25042 * 10 9 8 30 30 H 1.09000 * 109.46979 * 145.25357 * 10 9 8 31 31 H 1.08998 * 109.47186 * 300.00412 * 11 10 9 32 32 H 1.09000 * 109.46891 * 60.00159 * 11 10 9 33 33 H 1.08998 * 109.47491 * 300.00311 * 12 11 10 34 34 H 1.09000 * 109.47031 * 60.00332 * 12 11 10 35 35 H 1.08998 * 109.47314 * 95.11873 * 14 13 12 36 36 H 1.08996 * 109.47183 * 215.11950 * 14 13 12 37 37 H 1.08998 * 109.47249 * 335.12424 * 14 13 12 38 38 H 0.96994 * 120.00102 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3750 -0.0005 5 6 1.9214 3.6052 -0.0011 6 35 0.8942 5.1929 -0.0011 7 6 3.3033 3.6757 -0.0016 8 6 4.0566 2.5167 -0.0008 9 6 3.4311 1.2846 0.0056 10 6 4.2534 0.0218 0.0129 11 6 4.4324 -0.4786 -1.4219 12 6 5.2678 -1.7604 -1.4144 13 7 5.4397 -2.2391 -2.7883 14 6 6.5850 -1.7888 -3.5830 15 6 4.5298 -3.1076 -3.3296 16 1 3.5273 -3.1574 -2.9308 17 6 4.8958 -3.9240 -4.3910 18 7 6.1652 -4.0550 -4.7131 19 14 3.5869 -4.8367 -5.3619 20 1 3.1303 -3.9908 -6.4939 21 1 4.1546 -6.1039 -5.8886 22 1 2.4351 -5.1412 -4.4755 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 0.5139 0.8900 26 1 0.2128 2.3201 -0.0014 27 1 3.7942 4.6378 -0.0025 28 1 5.1351 2.5743 -0.0008 29 1 5.2304 0.2268 0.4507 30 1 3.7437 -0.7402 0.6025 31 1 3.4555 -0.6836 -1.8597 32 1 4.9421 0.2834 -2.0115 33 1 6.2447 -1.5550 -0.9767 34 1 4.7585 -2.5226 -0.8247 35 1 7.3903 -2.5193 -3.5061 36 1 6.2857 -1.6864 -4.6261 37 1 6.9312 -0.8257 -3.2081 38 1 6.4210 -4.6251 -5.4550 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096009692.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:48:55 Heat of formation + Delta-G solvation = -14.395418 kcal Electronic energy + Delta-G solvation = -19659.582000 eV Core-core repulsion = 16548.429756 eV Total energy + Delta-G solvation = -3111.152244 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 327.058 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.32310 -38.55537 -37.82005 -35.48470 -33.46349 -32.12882 -31.26066 -30.21355 -28.27811 -27.89569 -26.77646 -24.08987 -23.31252 -22.21388 -21.66264 -18.87104 -18.67390 -17.49611 -17.01149 -16.73133 -16.57266 -15.78292 -15.46506 -15.31175 -14.90985 -14.84407 -14.47330 -14.11977 -14.02129 -13.35712 -13.08931 -12.94565 -12.81909 -12.70976 -12.49132 -12.41400 -12.30961 -12.14959 -12.02011 -11.85852 -11.67466 -11.38499 -11.33233 -11.29193 -10.62226 -9.80794 -9.17254 -8.71452 -7.80455 -5.29628 0.03189 0.33328 0.55645 1.45412 1.46964 1.55885 2.34904 2.51149 2.57076 3.31444 3.70021 3.73372 3.85994 4.05644 4.10717 4.24826 4.34577 4.34997 4.50860 4.60410 4.63648 4.70747 4.74246 4.83717 4.86210 4.94249 5.08854 5.12508 5.19451 5.29389 5.33746 5.56287 5.59560 5.64941 5.70735 5.72247 6.35671 6.37127 7.17865 7.91416 8.34573 9.22273 Molecular weight = 327.06amu Principal moments of inertia in cm(-1) A = 0.020295 B = 0.002793 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.322446 B =10022.323309 C =10467.733062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.327 6.327 3 C 0.122 3.878 4 C -0.186 4.186 5 C -0.069 4.069 6 Br -0.044 7.044 7 C -0.128 4.128 8 C -0.075 4.075 9 C -0.105 4.105 10 C -0.062 4.062 11 C -0.108 4.108 12 C 0.150 3.850 13 N -0.624 5.624 14 C 0.177 3.823 15 C -0.260 4.260 16 H 0.066 0.934 17 C -0.056 4.056 18 N -0.940 5.940 19 Si 0.967 3.033 20 H -0.287 1.287 21 H -0.293 1.293 22 H -0.268 1.268 23 H 0.113 0.887 24 H 0.060 0.940 25 H 0.071 0.929 26 H 0.148 0.852 27 H 0.152 0.848 28 H 0.160 0.840 29 H 0.091 0.909 30 H 0.069 0.931 31 H 0.033 0.967 32 H 0.049 0.951 33 H 0.052 0.948 34 H 0.039 0.961 35 H 0.005 0.995 36 H 0.011 0.989 37 H 0.032 0.968 38 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.238 20.109 13.920 26.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.240 6.240 3 C 0.075 3.925 4 C -0.207 4.207 5 C -0.148 4.148 6 Br 0.041 6.959 7 C -0.148 4.148 8 C -0.094 4.094 9 C -0.106 4.106 10 C -0.100 4.100 11 C -0.148 4.148 12 C 0.024 3.976 13 N -0.347 5.347 14 C 0.032 3.968 15 C -0.391 4.391 16 H 0.084 0.916 17 C -0.251 4.251 18 N -0.587 5.587 19 Si 0.796 3.204 20 H -0.214 1.214 21 H -0.219 1.219 22 H -0.193 1.193 23 H 0.132 0.868 24 H 0.079 0.921 25 H 0.089 0.911 26 H 0.166 0.834 27 H 0.170 0.830 28 H 0.177 0.823 29 H 0.110 0.890 30 H 0.088 0.912 31 H 0.052 0.948 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.057 0.943 35 H 0.023 0.977 36 H 0.030 0.970 37 H 0.051 0.949 38 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -11.479 20.404 13.809 27.180 hybrid contribution -0.607 -0.967 -0.915 1.463 sum -12.086 19.437 12.894 26.270 Atomic orbital electron populations 1.23340 0.76746 1.05471 1.02176 1.86153 1.23165 1.26381 1.88315 1.18987 0.92185 0.84469 0.96832 1.21247 1.01037 0.90551 1.07841 1.21640 0.94939 0.91596 1.06673 1.96698 1.70905 1.30570 1.97678 1.21256 0.91400 1.00178 1.01943 1.21206 1.01411 0.89806 0.96943 1.19688 0.90858 0.96945 1.03158 1.20369 0.99474 0.93436 0.96727 1.21895 0.99483 0.97848 0.95611 1.20922 0.97662 0.94136 0.84829 1.44191 1.27744 1.51876 1.10904 1.20521 0.89080 0.93830 0.93382 1.19502 0.92230 1.13440 1.13883 0.91631 1.25795 0.97785 0.99441 1.02060 1.70231 1.15783 1.42091 1.30636 0.85257 0.78867 0.77510 0.78800 1.21393 1.21917 1.19284 0.86829 0.92142 0.91055 0.83400 0.82985 0.82285 0.89044 0.91229 0.94759 0.93261 0.92929 0.94294 0.97665 0.97027 0.94939 0.94316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.81 113.37 1.11 1.42 16 2 O -0.33 -8.82 9.63 -92.44 -0.89 -9.71 16 3 C 0.12 3.17 6.66 22.50 0.15 3.32 16 4 C -0.19 -4.17 8.78 22.38 0.20 -3.97 16 5 C -0.07 -1.46 6.22 22.30 0.14 -1.32 16 6 Br -0.04 -0.79 33.70 -20.37 -0.69 -1.48 16 7 C -0.13 -2.52 9.78 22.30 0.22 -2.30 16 8 C -0.08 -1.58 9.68 22.25 0.22 -1.36 16 9 C -0.11 -2.70 5.15 -19.77 -0.10 -2.80 16 10 C -0.06 -1.70 5.07 29.85 0.15 -1.54 16 11 C -0.11 -3.83 5.52 30.60 0.17 -3.66 16 12 C 0.15 6.22 5.64 86.38 0.49 6.70 16 13 N -0.62 -32.61 2.92 -726.95 -2.12 -34.74 16 14 C 0.18 9.07 8.98 127.77 1.15 10.21 16 15 C -0.26 -14.89 9.65 84.03 0.81 -14.08 16 16 H 0.07 3.69 7.86 -2.91 -0.02 3.66 16 17 C -0.06 -3.25 5.10 84.86 0.43 -2.82 16 18 N -0.94 -57.29 10.71 21.65 0.23 -57.06 16 19 Si 0.97 46.33 29.57 68.60 2.03 48.36 16 20 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 21 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 22 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 23 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 24 H 0.06 1.02 7.66 -2.39 -0.02 1.00 16 25 H 0.07 1.01 7.66 -2.38 -0.02 0.99 16 26 H 0.15 2.76 6.30 -2.91 -0.02 2.75 16 27 H 0.15 2.30 8.06 -2.91 -0.02 2.28 16 28 H 0.16 2.58 8.06 -2.91 -0.02 2.55 16 29 H 0.09 2.07 8.05 -2.39 -0.02 2.05 16 30 H 0.07 1.98 7.69 -2.39 -0.02 1.96 16 31 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.05 1.97 8.07 -2.39 -0.02 1.95 16 34 H 0.04 1.64 8.04 -2.39 -0.02 1.63 16 35 H 0.01 0.28 7.34 -2.39 -0.02 0.27 16 36 H 0.01 0.62 7.34 -2.39 -0.02 0.60 16 37 H 0.03 1.39 8.03 -2.39 -0.02 1.37 16 38 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 Total: -1.00 -67.45 336.80 4.72 -62.73 By element: Atomic # 1 Polarization: 3.06 SS G_CDS: 1.04 Total: 4.10 kcal Atomic # 6 Polarization: -17.33 SS G_CDS: 5.13 Total: -12.21 kcal Atomic # 7 Polarization: -89.90 SS G_CDS: -1.89 Total: -91.79 kcal Atomic # 8 Polarization: -8.82 SS G_CDS: -0.89 Total: -9.71 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.36 kcal Atomic # 35 Polarization: -0.79 SS G_CDS: -0.69 Total: -1.48 kcal Total: -67.45 4.72 -62.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096009692.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.335 kcal (2) G-P(sol) polarization free energy of solvation -67.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds