Wall clock time and date at job start Fri Apr 10 2020 14:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46507 * 109.47089 * 121.29134 * 3 2 1 5 5 C 1.36941 * 119.99565 * 273.47307 * 4 3 2 6 6 H 1.07998 * 119.99740 * 186.54983 * 5 4 3 7 7 C 1.38812 * 119.99818 * 6.54954 * 5 4 3 8 8 N 1.31614 * 120.00412 * 25.22308 * 7 5 4 9 9 Si 1.86801 * 119.99424 * 205.22129 * 7 5 4 10 10 H 1.48497 * 109.47180 * 90.00110 * 9 7 5 11 11 H 1.48500 * 109.47186 * 210.00160 * 9 7 5 12 12 H 1.48501 * 109.47398 * 330.00370 * 9 7 5 13 13 S 1.65594 * 120.00127 * 93.46875 * 4 3 2 14 14 O 1.42093 * 106.40093 * 156.46027 * 13 4 3 15 15 O 1.42104 * 106.40470 * 23.54291 * 13 4 3 16 16 C 1.76194 * 107.21949 * 270.00240 * 13 4 3 17 17 C 1.34157 * 127.02598 * 90.02931 * 16 13 4 18 18 C 1.50703 * 125.42827 * 359.97438 * 17 16 13 19 19 O 1.34221 * 109.14306 * 179.73727 * 17 16 13 20 20 C 1.33622 * 110.92894 * 0.25998 * 19 17 16 21 21 C 1.50696 * 125.81154 * 179.97438 * 20 19 17 22 22 C 1.36505 * 108.38236 * 0.02562 * 20 19 17 23 23 C 1.47225 * 127.20226 * 180.02562 * 22 20 19 24 24 O 1.21531 * 120.00059 * 89.97521 * 23 22 20 25 25 O 1.34777 * 119.99630 * 269.97194 * 23 22 20 26 26 H 4.40651 * 5.51421 * 180.02562 * 4 1 2 27 27 H 1.08997 * 109.47631 * 1.28790 * 3 2 1 28 28 H 1.09004 * 109.47032 * 241.28337 * 3 2 1 29 29 H 0.97002 * 119.99841 * 179.97438 * 8 7 5 30 30 H 1.09004 * 109.46872 * 179.72129 * 18 17 16 31 31 H 1.08997 * 109.46985 * 59.72466 * 18 17 16 32 32 H 1.08997 * 109.46942 * 299.72171 * 18 17 16 33 33 H 1.09002 * 109.47226 * 359.97438 * 21 20 19 34 34 H 1.09005 * 109.46772 * 119.97779 * 21 20 19 35 35 H 1.09001 * 109.47087 * 239.97516 * 21 20 19 36 36 H 0.96702 * 116.99387 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1340 0.7183 -1.1804 5 6 3.2948 0.0544 -2.3673 6 1 3.7530 0.5544 -3.2078 7 6 2.8688 -1.2610 -2.4900 8 7 1.9077 -1.7166 -1.7147 9 14 3.6596 -2.3845 -3.7556 10 1 4.8210 -3.0788 -3.1441 11 1 2.6672 -3.3896 -4.2140 12 1 4.1192 -1.5782 -4.9149 13 16 3.4911 2.3321 -1.0793 14 8 4.4151 2.6048 -2.1237 15 8 3.7650 2.5976 0.2896 16 6 2.0196 3.2176 -1.4730 17 6 1.0665 3.6209 -0.6192 18 6 1.0723 3.3885 0.8698 19 8 0.1096 4.2689 -1.3019 20 6 0.3962 4.3064 -2.6064 21 6 -0.4479 4.9493 -3.6765 22 6 1.5833 3.6624 -2.8051 23 6 2.2838 3.4614 -4.0844 24 8 3.0880 4.2856 -4.4728 25 8 2.0331 2.3633 -4.8246 26 1 -1.0502 0.0000 0.0003 27 1 3.0099 -1.0265 -0.0231 28 1 3.0091 0.4946 0.9013 29 1 1.6098 -2.6357 -1.8007 30 1 0.1774 3.8287 1.3097 31 1 1.9572 3.8516 1.3063 32 1 1.0865 2.3172 1.0702 33 1 -1.3389 5.3846 -3.2239 34 1 0.1272 5.7315 -4.1719 35 1 -0.7427 4.1966 -4.4078 36 1 2.5171 2.2754 -5.6571 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281015433.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:47:39 Heat of formation + Delta-G solvation = -97.342377 kcal Electronic energy + Delta-G solvation = -27424.563773 eV Core-core repulsion = 23390.452976 eV Total energy + Delta-G solvation = -4034.110797 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.070 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.73845 -40.99814 -38.12574 -37.78780 -37.12290 -36.38487 -34.39881 -34.24848 -33.76392 -32.87441 -30.57250 -28.35167 -26.97179 -25.64533 -24.90859 -23.26072 -21.20186 -20.31245 -19.59155 -19.16481 -18.69444 -18.32881 -18.05252 -17.59811 -17.36937 -16.50477 -16.40922 -16.14973 -16.01661 -15.25913 -14.99490 -14.70508 -14.52634 -14.38164 -14.22984 -14.12939 -13.69981 -13.55611 -13.48665 -13.08950 -12.82416 -12.67236 -12.65468 -12.59829 -12.57517 -12.27416 -12.08056 -12.01002 -11.89651 -11.44881 -11.19920 -10.89380 -10.53227 -10.10020 -9.62750 -8.38158 -5.80839 -0.16778 0.37573 0.61744 0.89412 1.50262 1.52135 1.56389 1.64764 2.07737 2.15810 2.34670 2.48420 2.82139 2.90334 3.23066 3.27075 3.59560 3.85815 3.96976 4.13590 4.24324 4.40824 4.47947 4.51940 4.53925 4.57363 4.67172 4.81943 4.97505 5.07535 5.14714 5.24773 5.40013 5.42595 5.53632 5.75325 6.34238 6.71332 6.86383 7.16140 7.25485 8.52534 Molecular weight = 327.07amu Principal moments of inertia in cm(-1) A = 0.012053 B = 0.007357 C = 0.006151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2322.608065 B = 3804.984179 C = 4550.910145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.144 4.144 3 C 0.231 3.769 4 N -0.794 5.794 5 C -0.256 4.256 6 H 0.106 0.894 7 C 0.006 3.994 8 N -0.824 5.824 9 Si 0.987 3.013 10 H -0.267 1.267 11 H -0.273 1.273 12 H -0.264 1.264 13 S 2.538 3.462 14 O -1.014 7.014 15 O -1.004 7.004 16 C -0.741 4.741 17 C 0.114 3.886 18 C -0.093 4.093 19 O -0.165 6.165 20 C 0.046 3.954 21 C -0.077 4.077 22 C -0.187 4.187 23 C 0.571 3.429 24 O -0.529 6.529 25 O -0.495 6.495 26 H 0.226 0.774 27 H 0.112 0.888 28 H 0.092 0.908 29 H 0.282 0.718 30 H 0.117 0.883 31 H 0.106 0.894 32 H 0.096 0.904 33 H 0.115 0.885 34 H 0.100 0.900 35 H 0.106 0.894 36 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.302 3.199 -0.466 8.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.268 4.268 2 C -0.147 4.147 3 C 0.106 3.894 4 N -0.616 5.616 5 C -0.405 4.405 6 H 0.123 0.877 7 C -0.206 4.206 8 N -0.462 5.462 9 Si 0.809 3.191 10 H -0.192 1.192 11 H -0.198 1.198 12 H -0.189 1.189 13 S 2.638 3.362 14 O -1.004 7.004 15 O -0.994 6.994 16 C -0.821 4.821 17 C 0.062 3.938 18 C -0.149 4.149 19 O -0.061 6.061 20 C -0.005 4.005 21 C -0.133 4.133 22 C -0.190 4.190 23 C 0.413 3.587 24 O -0.419 6.419 25 O -0.307 6.307 26 H 0.243 0.757 27 H 0.129 0.871 28 H 0.110 0.890 29 H 0.093 0.907 30 H 0.135 0.865 31 H 0.124 0.876 32 H 0.114 0.886 33 H 0.133 0.867 34 H 0.119 0.881 35 H 0.124 0.876 36 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges -7.865 4.140 0.305 8.893 hybrid contribution -0.001 -0.502 -1.492 1.574 sum -7.866 3.639 -1.187 8.747 Atomic orbital electron populations 1.24926 0.96054 1.03197 1.02584 1.23439 0.94823 0.98124 0.98268 1.18578 0.84749 0.99343 0.86744 1.55541 1.71902 1.19129 1.15021 1.20184 1.31669 0.94549 0.94094 0.87687 1.26240 0.95103 0.99215 1.00057 1.70282 1.21109 1.17714 1.37073 0.85007 0.78288 0.77609 0.78158 1.19240 1.19834 1.18852 1.11668 0.77967 0.74010 0.72588 1.93310 1.63801 1.85287 1.58047 1.93285 1.86130 1.85489 1.34496 1.34342 1.27647 1.22648 0.97455 1.22516 0.84431 0.91107 0.95767 1.20922 1.06509 1.05076 0.82413 1.83647 1.43802 1.60213 1.18466 1.23338 0.94195 0.99656 0.83351 1.20737 0.99127 1.01241 0.92198 1.19778 0.99080 1.09652 0.90508 1.19742 0.77813 0.78300 0.82801 1.90834 1.33384 1.45914 1.71735 1.84691 1.66074 1.42146 1.37825 0.75689 0.87065 0.88994 0.90739 0.86472 0.87566 0.88597 0.86676 0.88135 0.87565 0.70955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -9.26 19.04 74.32 1.42 -7.85 16 2 C -0.14 -5.98 9.84 31.12 0.31 -5.67 16 3 C 0.23 9.98 5.45 84.57 0.46 10.44 16 4 N -0.79 -38.19 2.88 -352.50 -1.02 -39.21 16 5 C -0.26 -12.63 9.48 84.03 0.80 -11.83 16 6 H 0.11 5.41 7.22 -2.91 -0.02 5.39 16 7 C 0.01 0.27 4.93 84.86 0.42 0.68 16 8 N -0.82 -37.23 8.95 21.65 0.19 -37.03 16 9 Si 0.99 36.47 29.62 68.60 2.03 38.50 16 10 H -0.27 -9.68 7.11 99.48 0.71 -8.97 16 11 H -0.27 -9.70 7.11 99.48 0.71 -9.00 16 12 H -0.26 -9.74 7.11 99.48 0.71 -9.04 16 13 S 2.54 126.10 5.74 -56.49 -0.32 125.78 16 14 O -1.01 -57.11 15.85 -128.00 -2.03 -59.14 16 15 O -1.00 -48.89 14.59 -128.00 -1.87 -50.76 16 16 C -0.74 -33.63 6.43 23.66 0.15 -33.48 16 17 C 0.11 4.37 7.28 24.76 0.18 4.55 16 18 C -0.09 -2.90 9.20 71.24 0.66 -2.24 16 19 O -0.17 -5.74 10.52 4.69 0.05 -5.69 16 20 C 0.05 1.58 7.38 25.28 0.19 1.76 16 21 C -0.08 -1.68 10.18 71.23 0.72 -0.95 16 22 C -0.19 -8.06 6.19 -19.00 -0.12 -8.18 16 23 C 0.57 24.57 7.05 70.18 0.49 25.07 16 24 O -0.53 -24.91 17.90 19.73 0.35 -24.56 16 25 O -0.49 -18.16 13.44 -56.88 -0.76 -18.92 16 26 H 0.23 6.61 7.80 -4.41 -0.03 6.57 16 27 H 0.11 4.86 6.42 -2.39 -0.02 4.85 16 28 H 0.09 3.67 6.94 -2.39 -0.02 3.66 16 29 H 0.28 11.91 8.31 -92.71 -0.77 11.14 16 30 H 0.12 2.63 8.14 -2.39 -0.02 2.61 16 31 H 0.11 3.34 7.34 -2.39 -0.02 3.32 16 32 H 0.10 3.10 6.43 -2.39 -0.02 3.09 16 33 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.10 2.01 8.14 -2.38 -0.02 1.99 16 35 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.43 11.00 9.11 -74.06 -0.67 10.32 16 Total: -1.00 -71.79 335.40 2.78 -69.01 By element: Atomic # 1 Polarization: 29.23 SS G_CDS: 0.48 Total: 29.71 kcal Atomic # 6 Polarization: -33.36 SS G_CDS: 5.67 Total: -27.69 kcal Atomic # 7 Polarization: -75.42 SS G_CDS: -0.82 Total: -76.24 kcal Atomic # 8 Polarization: -154.80 SS G_CDS: -4.26 Total: -159.06 kcal Atomic # 14 Polarization: 36.47 SS G_CDS: 2.03 Total: 38.50 kcal Atomic # 16 Polarization: 126.10 SS G_CDS: -0.32 Total: 125.78 kcal Total: -71.79 2.78 -69.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281015433.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.329 kcal (2) G-P(sol) polarization free energy of solvation -71.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds