Wall clock time and date at job start Fri Apr 10 2020 14:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47100 * 224.10104 * 3 2 1 5 5 C 1.36934 * 120.00094 * 273.25536 * 4 3 2 6 6 H 1.08007 * 120.00384 * 186.69997 * 5 4 3 7 7 C 1.38815 * 119.99922 * 6.69833 * 5 4 3 8 8 N 1.31612 * 120.00243 * 25.19248 * 7 5 4 9 9 Si 1.86803 * 119.99905 * 205.19001 * 7 5 4 10 10 H 1.48504 * 109.47017 * 89.99945 * 9 7 5 11 11 H 1.48502 * 109.47386 * 209.99787 * 9 7 5 12 12 H 1.48504 * 109.47243 * 330.00202 * 9 7 5 13 13 S 1.65604 * 120.00153 * 93.25162 * 4 3 2 14 14 O 1.42100 * 106.40293 * 156.46523 * 13 4 3 15 15 O 1.42100 * 106.40140 * 23.53972 * 13 4 3 16 16 C 1.76204 * 107.21711 * 270.00161 * 13 4 3 17 17 C 1.34163 * 125.42436 * 89.99804 * 16 13 4 18 18 C 1.47055 * 105.94566 * 179.97438 * 17 16 13 19 19 C 1.47235 * 127.20151 * 180.02562 * 18 17 16 20 20 O 1.21535 * 120.00493 * 179.97438 * 19 18 17 21 21 O 1.34777 * 119.99723 * 359.97196 * 19 18 17 22 22 C 1.45197 * 116.99668 * 180.02562 * 21 19 18 23 23 C 1.36501 * 105.60216 * 0.02562 * 18 17 16 24 24 C 1.50697 * 125.80880 * 180.02562 * 23 18 17 25 25 O 1.33627 * 108.38028 * 359.75894 * 23 18 17 26 26 H 4.40639 * 5.51337 * 180.02562 * 4 1 2 27 27 H 1.09001 * 109.47361 * 104.10635 * 3 2 1 28 28 H 1.08996 * 109.47478 * 344.09922 * 3 2 1 29 29 H 0.96996 * 120.00590 * 180.02562 * 8 7 5 30 30 H 1.07993 * 127.02727 * 0.02562 * 17 16 13 31 31 H 1.09003 * 109.47238 * 299.99671 * 22 21 19 32 32 H 1.08997 * 109.47594 * 59.99769 * 22 21 19 33 33 H 1.09003 * 109.47058 * 179.97438 * 22 21 19 34 34 H 1.09008 * 109.46865 * 90.00528 * 24 23 18 35 35 H 1.09002 * 109.47071 * 209.99903 * 24 23 18 36 36 H 1.08988 * 109.47457 * 330.00132 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1338 0.9927 0.9612 5 6 3.2980 2.2965 0.5759 6 1 3.7584 3.0047 1.2489 7 6 2.8727 2.7078 -0.6799 8 7 1.9101 2.0546 -1.2954 9 14 3.6666 4.1888 -1.4961 10 1 4.8270 3.7432 -2.3086 11 1 2.6755 4.8601 -2.3749 12 1 4.1284 5.1402 -0.4536 13 16 3.4867 0.5376 2.5139 14 8 4.4115 1.4946 3.0122 15 8 3.7580 -0.8566 2.4715 16 6 2.0135 0.7293 3.4612 17 6 1.0774 -0.2145 3.6428 18 6 0.0467 0.3974 4.4948 19 6 -1.1931 -0.2298 4.9819 20 8 -1.9580 0.4013 5.6846 21 8 -1.4799 -1.5038 4.6485 22 6 -2.7194 -2.0570 5.1640 23 6 0.4799 1.6685 4.7396 24 6 -0.2377 2.6996 5.5721 25 8 1.6513 1.8411 4.1202 26 1 -1.0502 -0.0004 -0.0001 27 1 3.0092 0.2513 -0.9967 28 1 3.0098 -0.9875 0.2815 29 1 1.6131 2.3417 -2.1730 30 1 1.0805 -1.2186 3.2453 31 1 -2.7010 -2.0364 6.2537 32 1 -3.5597 -1.4637 4.8036 33 1 -2.8282 -3.0860 4.8214 34 1 0.0858 2.6178 6.6098 35 1 -0.0049 3.6960 5.1964 36 1 -1.3128 2.5307 5.5122 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281508872.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:47:46 Heat of formation + Delta-G solvation = -67.145375 kcal Electronic energy + Delta-G solvation = -26263.817919 eV Core-core repulsion = 22231.016562 eV Total energy + Delta-G solvation = -4032.801356 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.070 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.09445 -39.99046 -36.57731 -36.36378 -35.87392 -34.45136 -32.80167 -32.29631 -31.68008 -31.32850 -28.19417 -26.80872 -26.61215 -24.06360 -23.39547 -21.31750 -19.94910 -18.79684 -18.37812 -17.84203 -17.11463 -16.74821 -16.52829 -16.30836 -15.66694 -15.60934 -14.84361 -14.83594 -14.52857 -13.72046 -13.49882 -13.34391 -13.26991 -13.08435 -12.85792 -12.65073 -12.55830 -12.11573 -12.06313 -11.80407 -11.43511 -11.15912 -10.89454 -10.80633 -10.78453 -10.53588 -10.52407 -10.45347 -10.26115 -9.90812 -9.57524 -9.35710 -9.02593 -8.58047 -8.41918 -6.92013 -4.18811 1.33141 1.42024 2.10192 2.74076 2.96081 3.02689 3.07467 3.21615 3.31151 3.66619 3.82163 4.05319 4.37208 4.46347 4.83208 4.92034 5.03095 5.05757 5.12538 5.25342 5.42735 5.45490 5.48246 5.52678 5.68025 5.80528 6.04138 6.16569 6.21752 6.40074 6.56191 6.58442 6.81625 6.93472 7.01383 7.33088 7.85561 7.90256 8.22708 8.68376 8.78828 9.96072 Molecular weight = 327.07amu Principal moments of inertia in cm(-1) A = 0.014905 B = 0.004669 C = 0.004541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.102833 B = 5995.339037 C = 6163.985984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C -0.120 4.120 3 C 0.227 3.773 4 N -0.764 5.764 5 C -0.204 4.204 6 H 0.134 0.866 7 C 0.024 3.976 8 N -0.791 5.791 9 Si 0.942 3.058 10 H -0.267 1.267 11 H -0.278 1.278 12 H -0.258 1.258 13 S 2.472 3.528 14 O -0.972 6.972 15 O -0.989 6.989 16 C -0.516 4.516 17 C -0.090 4.090 18 C -0.258 4.258 19 C 0.548 3.452 20 O -0.520 6.520 21 O -0.350 6.350 22 C 0.038 3.962 23 C 0.094 3.906 24 C -0.085 4.085 25 O -0.115 6.115 26 H 0.196 0.804 27 H 0.119 0.881 28 H 0.088 0.912 29 H 0.284 0.716 30 H 0.165 0.835 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.101 0.899 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.990 -1.791 3.147 7.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.274 4.274 2 C -0.123 4.123 3 C 0.102 3.898 4 N -0.583 5.583 5 C -0.360 4.360 6 H 0.151 0.849 7 C -0.193 4.193 8 N -0.429 5.429 9 Si 0.765 3.235 10 H -0.192 1.192 11 H -0.203 1.203 12 H -0.182 1.182 13 S 2.567 3.433 14 O -0.961 6.961 15 O -0.977 6.977 16 C -0.632 4.632 17 C -0.110 4.110 18 C -0.261 4.261 19 C 0.396 3.604 20 O -0.412 6.412 21 O -0.266 6.266 22 C -0.056 4.056 23 C 0.038 3.962 24 C -0.141 4.141 25 O -0.007 6.007 26 H 0.214 0.786 27 H 0.136 0.864 28 H 0.106 0.894 29 H 0.095 0.905 30 H 0.182 0.818 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.119 0.881 34 H 0.109 0.891 35 H 0.103 0.897 36 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -5.415 -1.954 3.943 6.977 hybrid contribution -1.438 0.409 -0.140 1.501 sum -6.852 -1.545 3.803 7.988 Atomic orbital electron populations 1.24219 0.95303 1.04798 1.03102 1.23269 0.94470 0.96464 0.98084 1.18662 0.84096 0.91280 0.95747 1.56476 1.67912 1.15038 1.18890 1.20706 1.27214 0.89008 0.99060 0.84912 1.25931 0.95137 0.99821 0.98374 1.70256 1.19855 1.37771 1.15052 0.85643 0.79009 0.79419 0.79396 1.19172 1.20336 1.18222 1.16526 0.79476 0.73935 0.73403 1.93321 1.62295 1.61060 1.79462 1.93342 1.85128 1.33162 1.86114 1.38845 1.25147 0.88048 1.11202 1.22739 0.91277 1.00142 0.96873 1.20190 0.98012 0.95798 1.12133 1.19961 0.84309 0.79639 0.76508 1.90773 1.49992 1.63533 1.36866 1.86614 1.41794 1.28490 1.69751 1.23245 0.83844 0.98916 0.99605 1.23225 0.85861 0.94434 0.92711 1.20642 1.00358 0.95505 0.97644 1.84018 1.30777 1.36336 1.49567 0.78645 0.86384 0.89422 0.90482 0.81777 0.92014 0.91946 0.88081 0.89128 0.89711 0.87758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -5.14 19.25 29.55 0.57 -4.57 16 2 C -0.12 -2.58 11.25 -37.12 -0.42 -2.99 16 3 C 0.23 4.79 5.45 -6.83 -0.04 4.75 16 4 N -0.76 -17.40 2.88 -62.77 -0.18 -17.59 16 5 C -0.20 -4.67 9.48 -15.06 -0.14 -4.81 16 6 H 0.13 3.03 7.22 -52.48 -0.38 2.65 16 7 C 0.02 0.51 4.92 -17.43 -0.09 0.42 16 8 N -0.79 -17.20 8.96 55.49 0.50 -16.70 16 9 Si 0.94 16.74 29.62 -169.99 -5.04 11.70 16 10 H -0.27 -4.68 7.11 56.52 0.40 -4.28 16 11 H -0.28 -4.93 7.11 56.52 0.40 -4.52 16 12 H -0.26 -4.61 7.11 56.52 0.40 -4.21 16 13 S 2.47 58.30 5.80 -107.50 -0.62 57.67 16 14 O -0.97 -25.06 16.80 -57.29 -0.96 -26.02 16 15 O -0.99 -24.04 16.38 -57.17 -0.94 -24.98 16 16 C -0.52 -11.63 7.32 29.30 0.21 -11.42 16 17 C -0.09 -1.89 10.74 -37.44 -0.40 -2.29 16 18 C -0.26 -5.07 6.32 -103.30 -0.65 -5.72 16 19 C 0.55 9.79 7.95 34.39 0.27 10.06 16 20 O -0.52 -9.31 14.64 -19.29 -0.28 -9.59 16 21 O -0.35 -5.58 10.48 -40.70 -0.43 -6.01 16 22 C 0.04 0.42 10.57 101.05 1.07 1.49 16 23 C 0.09 1.79 7.38 -34.94 -0.26 1.53 16 24 C -0.09 -1.21 9.89 36.00 0.36 -0.85 16 25 O -0.11 -2.50 10.52 7.71 0.08 -2.42 16 26 H 0.20 3.32 7.80 -54.08 -0.42 2.90 16 27 H 0.12 2.43 6.41 -51.93 -0.33 2.10 16 28 H 0.09 1.72 6.95 -51.93 -0.36 1.36 16 29 H 0.28 5.75 8.31 -40.82 -0.34 5.42 16 30 H 0.16 3.24 8.06 -52.49 -0.42 2.82 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.09 1.11 8.14 -51.92 -0.42 0.68 16 35 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.10 1.46 6.49 -51.94 -0.34 1.12 16 LS Contribution 339.86 15.07 5.12 5.12 Total: -1.00 -29.93 339.86 -5.77 -35.70 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -3.50 Total: 7.50 kcal Atomic # 6 Polarization: -14.88 SS G_CDS: 0.48 Total: -14.39 kcal Atomic # 7 Polarization: -34.60 SS G_CDS: 0.32 Total: -34.28 kcal Atomic # 8 Polarization: -66.48 SS G_CDS: -2.53 Total: -69.01 kcal Atomic # 14 Polarization: 16.74 SS G_CDS: -5.04 Total: 11.70 kcal Atomic # 16 Polarization: 58.30 SS G_CDS: -0.62 Total: 57.67 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -29.93 -5.77 -35.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281508872.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.450 kcal (2) G-P(sol) polarization free energy of solvation -29.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds