Wall clock time and date at job start Fri Apr 10 2020 14:47:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47100 * 224.10104 * 3 2 1 5 5 C 1.36934 * 120.00094 * 273.25536 * 4 3 2 6 6 H 1.08007 * 120.00384 * 186.69997 * 5 4 3 7 7 C 1.38815 * 119.99922 * 6.69833 * 5 4 3 8 8 N 1.31612 * 120.00243 * 25.19248 * 7 5 4 9 9 Si 1.86803 * 119.99905 * 205.19001 * 7 5 4 10 10 H 1.48504 * 109.47017 * 89.99945 * 9 7 5 11 11 H 1.48502 * 109.47386 * 209.99787 * 9 7 5 12 12 H 1.48504 * 109.47243 * 330.00202 * 9 7 5 13 13 S 1.65604 * 120.00153 * 93.25162 * 4 3 2 14 14 O 1.42100 * 106.40293 * 156.46523 * 13 4 3 15 15 O 1.42100 * 106.40140 * 23.53972 * 13 4 3 16 16 C 1.76204 * 107.21711 * 270.00161 * 13 4 3 17 17 C 1.34163 * 125.42436 * 89.99804 * 16 13 4 18 18 C 1.47055 * 105.94566 * 179.97438 * 17 16 13 19 19 C 1.47235 * 127.20151 * 180.02562 * 18 17 16 20 20 O 1.21535 * 120.00493 * 179.97438 * 19 18 17 21 21 O 1.34777 * 119.99723 * 359.97196 * 19 18 17 22 22 C 1.45197 * 116.99668 * 180.02562 * 21 19 18 23 23 C 1.36501 * 105.60216 * 0.02562 * 18 17 16 24 24 C 1.50697 * 125.80880 * 180.02562 * 23 18 17 25 25 O 1.33627 * 108.38028 * 359.75894 * 23 18 17 26 26 H 4.40639 * 5.51337 * 180.02562 * 4 1 2 27 27 H 1.09001 * 109.47361 * 104.10635 * 3 2 1 28 28 H 1.08996 * 109.47478 * 344.09922 * 3 2 1 29 29 H 0.96996 * 120.00590 * 180.02562 * 8 7 5 30 30 H 1.07993 * 127.02727 * 0.02562 * 17 16 13 31 31 H 1.09003 * 109.47238 * 299.99671 * 22 21 19 32 32 H 1.08997 * 109.47594 * 59.99769 * 22 21 19 33 33 H 1.09003 * 109.47058 * 179.97438 * 22 21 19 34 34 H 1.09008 * 109.46865 * 90.00528 * 24 23 18 35 35 H 1.09002 * 109.47071 * 209.99903 * 24 23 18 36 36 H 1.08988 * 109.47457 * 330.00132 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1338 0.9927 0.9612 5 6 3.2980 2.2965 0.5759 6 1 3.7584 3.0047 1.2489 7 6 2.8727 2.7078 -0.6799 8 7 1.9101 2.0546 -1.2954 9 14 3.6666 4.1888 -1.4961 10 1 4.8270 3.7432 -2.3086 11 1 2.6755 4.8601 -2.3749 12 1 4.1284 5.1402 -0.4536 13 16 3.4867 0.5376 2.5139 14 8 4.4115 1.4946 3.0122 15 8 3.7580 -0.8566 2.4715 16 6 2.0135 0.7293 3.4612 17 6 1.0774 -0.2145 3.6428 18 6 0.0467 0.3974 4.4948 19 6 -1.1931 -0.2298 4.9819 20 8 -1.9580 0.4013 5.6846 21 8 -1.4799 -1.5038 4.6485 22 6 -2.7194 -2.0570 5.1640 23 6 0.4799 1.6685 4.7396 24 6 -0.2377 2.6996 5.5721 25 8 1.6513 1.8411 4.1202 26 1 -1.0502 -0.0004 -0.0001 27 1 3.0092 0.2513 -0.9967 28 1 3.0098 -0.9875 0.2815 29 1 1.6131 2.3417 -2.1730 30 1 1.0805 -1.2186 3.2453 31 1 -2.7010 -2.0364 6.2537 32 1 -3.5597 -1.4637 4.8036 33 1 -2.8282 -3.0860 4.8214 34 1 0.0858 2.6178 6.6098 35 1 -0.0049 3.6960 5.1964 36 1 -1.3128 2.5307 5.5122 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281508872.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:47:44 Heat of formation + Delta-G solvation = -86.135029 kcal Electronic energy + Delta-G solvation = -26264.641372 eV Core-core repulsion = 22231.016562 eV Total energy + Delta-G solvation = -4033.624809 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.070 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -43.62946 -41.28152 -38.30139 -37.67527 -37.61685 -36.26153 -34.29160 -34.01683 -33.09417 -32.98775 -29.30525 -28.51489 -27.83617 -25.77767 -24.76694 -22.79729 -21.41891 -20.43356 -19.97430 -19.47027 -18.59039 -18.37077 -18.11040 -17.70560 -17.08827 -17.00929 -16.55461 -16.31298 -16.15781 -15.32632 -15.09171 -14.71529 -14.45009 -14.32566 -14.27759 -14.16379 -13.92469 -13.67798 -13.19467 -13.16769 -13.02772 -12.68792 -12.63505 -12.57287 -12.31927 -12.07648 -11.94022 -11.89246 -11.76968 -11.53065 -11.16161 -10.98929 -10.67696 -10.26279 -9.95028 -8.63629 -5.95473 -0.31413 -0.05927 0.49884 1.48314 1.52436 1.60138 1.68654 1.78786 1.84952 2.08072 2.27983 2.41884 2.67857 2.77700 3.21178 3.47162 3.65459 3.76597 3.88518 3.97531 4.23550 4.28096 4.28644 4.43182 4.47663 4.49879 4.60124 4.66778 4.88506 4.92267 5.04237 5.09398 5.18923 5.24180 5.40612 5.79629 6.15226 6.42984 6.54807 6.92246 7.16064 8.23825 Molecular weight = 327.07amu Principal moments of inertia in cm(-1) A = 0.014905 B = 0.004669 C = 0.004541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.102833 B = 5995.339037 C = 6163.985984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.152 4.152 3 C 0.224 3.776 4 N -0.759 5.759 5 C -0.206 4.206 6 H 0.129 0.871 7 C -0.001 4.001 8 N -0.791 5.791 9 Si 1.007 2.993 10 H -0.258 1.258 11 H -0.269 1.269 12 H -0.259 1.259 13 S 2.443 3.557 14 O -1.008 7.008 15 O -1.012 7.012 16 C -0.541 4.541 17 C -0.094 4.094 18 C -0.276 4.276 19 C 0.551 3.449 20 O -0.523 6.523 21 O -0.361 6.361 22 C 0.029 3.971 23 C 0.093 3.907 24 C -0.083 4.083 25 O -0.134 6.134 26 H 0.225 0.775 27 H 0.122 0.878 28 H 0.094 0.906 29 H 0.296 0.704 30 H 0.167 0.833 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.133 0.867 34 H 0.113 0.887 35 H 0.104 0.896 36 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.617 -0.680 2.063 7.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.264 4.264 2 C -0.155 4.155 3 C 0.099 3.901 4 N -0.575 5.575 5 C -0.366 4.366 6 H 0.146 0.854 7 C -0.218 4.218 8 N -0.428 5.428 9 Si 0.826 3.174 10 H -0.183 1.183 11 H -0.194 1.194 12 H -0.183 1.183 13 S 2.542 3.458 14 O -0.997 6.997 15 O -1.001 7.001 16 C -0.658 4.658 17 C -0.114 4.114 18 C -0.279 4.279 19 C 0.399 3.601 20 O -0.416 6.416 21 O -0.278 6.278 22 C -0.064 4.064 23 C 0.037 3.963 24 C -0.138 4.138 25 O -0.028 6.028 26 H 0.241 0.759 27 H 0.139 0.861 28 H 0.111 0.889 29 H 0.107 0.893 30 H 0.184 0.816 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.151 0.849 34 H 0.131 0.869 35 H 0.122 0.878 36 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -7.051 -0.931 2.896 7.679 hybrid contribution -1.087 0.120 0.018 1.094 sum -8.138 -0.811 2.913 8.682 Atomic orbital electron populations 1.24944 0.96147 1.03470 1.01825 1.23480 0.94962 0.97724 0.99299 1.18766 0.84489 0.91438 0.95384 1.56992 1.66840 1.15242 1.18468 1.21139 1.26332 0.89693 0.99461 0.85382 1.26803 0.95126 1.02047 0.97846 1.70302 1.19443 1.37696 1.15369 0.84701 0.78363 0.75982 0.78322 1.18274 1.19361 1.18279 1.18939 0.79909 0.73190 0.73777 1.93218 1.64411 1.61721 1.80379 1.93250 1.85921 1.34494 1.86425 1.38779 1.25796 0.88806 1.12397 1.22883 0.91578 1.00044 0.96927 1.20479 0.98767 0.96295 1.12358 1.19686 0.83686 0.80326 0.76438 1.90756 1.49915 1.63857 1.37046 1.86593 1.43943 1.27366 1.69858 1.23654 0.82036 1.00420 1.00248 1.24141 0.84892 0.95444 0.91829 1.20871 0.99859 0.95067 0.98024 1.83988 1.32139 1.36459 1.50185 0.75861 0.86078 0.88858 0.89310 0.81571 0.91283 0.91331 0.84891 0.86864 0.87775 0.87320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -9.54 19.25 74.32 1.43 -8.11 16 2 C -0.15 -6.45 11.25 31.13 0.35 -6.10 16 3 C 0.22 9.51 5.45 84.57 0.46 9.97 16 4 N -0.76 -35.25 2.88 -352.51 -1.02 -36.26 16 5 C -0.21 -9.40 9.48 84.03 0.80 -8.60 16 6 H 0.13 5.91 7.22 -2.91 -0.02 5.89 16 7 C 0.00 -0.06 4.92 84.86 0.42 0.36 16 8 N -0.79 -32.80 8.96 21.65 0.19 -32.60 16 9 Si 1.01 32.16 29.62 68.60 2.03 34.20 16 10 H -0.26 -7.98 7.11 99.48 0.71 -7.27 16 11 H -0.27 -8.25 7.11 99.48 0.71 -7.54 16 12 H -0.26 -8.35 7.11 99.48 0.71 -7.64 16 13 S 2.44 120.67 5.80 -56.49 -0.33 120.34 16 14 O -1.01 -54.61 16.80 -127.89 -2.15 -56.76 16 15 O -1.01 -51.82 16.38 -128.00 -2.10 -53.92 16 16 C -0.54 -25.35 7.32 66.89 0.49 -24.86 16 17 C -0.09 -4.06 10.74 23.65 0.25 -3.80 16 18 C -0.28 -10.86 6.32 -19.01 -0.12 -10.98 16 19 C 0.55 19.25 7.95 70.19 0.56 19.81 16 20 O -0.52 -17.99 14.64 19.72 0.29 -17.70 16 21 O -0.36 -11.13 10.48 -56.88 -0.60 -11.73 16 22 C 0.03 0.58 10.57 113.37 1.20 1.78 16 23 C 0.09 3.53 7.38 25.28 0.19 3.72 16 24 C -0.08 -2.20 9.89 71.23 0.70 -1.50 16 25 O -0.13 -6.01 10.52 4.66 0.05 -5.96 16 26 H 0.22 7.04 7.80 -4.41 -0.03 7.00 16 27 H 0.12 4.95 6.41 -2.39 -0.02 4.94 16 28 H 0.09 3.79 6.95 -2.39 -0.02 3.78 16 29 H 0.30 11.14 8.31 -92.71 -0.77 10.37 16 30 H 0.17 6.86 8.06 -2.91 -0.02 6.83 16 31 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.13 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.11 2.53 8.14 -2.38 -0.02 2.51 16 35 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 36 H 0.11 2.84 6.49 -2.39 -0.02 2.82 16 Total: -1.00 -64.60 339.86 4.23 -60.36 By element: Atomic # 1 Polarization: 27.22 SS G_CDS: 1.13 Total: 28.35 kcal Atomic # 6 Polarization: -35.04 SS G_CDS: 6.73 Total: -28.31 kcal Atomic # 7 Polarization: -68.04 SS G_CDS: -0.82 Total: -68.87 kcal Atomic # 8 Polarization: -141.57 SS G_CDS: -4.50 Total: -146.07 kcal Atomic # 14 Polarization: 32.16 SS G_CDS: 2.03 Total: 34.20 kcal Atomic # 16 Polarization: 120.67 SS G_CDS: -0.33 Total: 120.34 kcal Total: -64.60 4.23 -60.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281508872.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.771 kcal (2) G-P(sol) polarization free energy of solvation -64.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds