Wall clock time and date at job start Fri Apr 10 2020 14:49:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42909 * 114.00109 * 2 1 4 4 H 1.09004 * 108.88599 * 328.67130 * 3 2 1 5 5 C 1.54204 * 108.92193 * 87.20444 * 3 2 1 6 6 S 1.83830 * 102.85718 * 145.79167 * 5 3 2 7 7 O 1.42099 * 109.80939 * 77.68650 * 6 5 3 8 8 O 1.42098 * 109.81193 * 211.99854 * 6 5 3 9 9 C 1.83816 * 94.23614 * 324.85995 * 6 5 3 10 10 C 1.52381 * 108.92773 * 209.99932 * 3 2 1 11 11 H 1.09000 * 108.92093 * 118.64570 * 10 3 2 12 12 N 1.46502 * 108.92335 * 359.97438 * 10 3 2 13 13 S 1.65604 * 119.99597 * 145.00255 * 12 10 3 14 14 O 1.42102 * 104.27479 * 308.92606 * 13 12 10 15 15 O 1.42097 * 104.27323 * 181.06987 * 13 12 10 16 16 C 1.81391 * 104.45041 * 64.99658 * 13 12 10 17 17 C 1.53003 * 109.46896 * 179.97438 * 16 13 12 18 18 C 1.50703 * 109.47038 * 180.02562 * 17 16 13 19 19 H 1.08006 * 120.00159 * 359.97438 * 18 17 16 20 20 C 1.37877 * 120.00120 * 180.02562 * 18 17 16 21 21 N 1.31514 * 120.00089 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99938 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47297 * 269.99556 * 22 20 18 24 24 H 1.48503 * 109.47261 * 149.99737 * 22 20 18 25 25 H 1.48500 * 109.47454 * 29.99730 * 22 20 18 26 26 H 1.09000 * 109.47435 * 299.99931 * 1 2 3 27 27 H 1.09005 * 109.47014 * 60.00007 * 1 2 3 28 28 H 1.09003 * 109.46815 * 179.97438 * 1 2 3 29 29 H 1.09000 * 110.73813 * 264.12944 * 5 3 2 30 30 H 1.08995 * 110.73880 * 27.27212 * 5 3 2 31 31 H 1.09000 * 110.73881 * 276.79571 * 9 6 5 32 32 H 1.09004 * 110.73814 * 153.48204 * 9 6 5 33 33 H 0.96994 * 120.00175 * 324.99903 * 12 10 3 34 34 H 1.08996 * 109.47327 * 60.00078 * 16 13 12 35 35 H 1.08996 * 109.47109 * 299.99973 * 16 13 12 36 36 H 1.09003 * 109.46825 * 60.00440 * 17 16 13 37 37 H 1.08996 * 109.47396 * 300.00013 * 17 16 13 38 38 H 0.96998 * 119.99255 * 0.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3490 1.9862 -0.5362 5 6 2.1487 1.7913 1.4570 6 16 3.6965 2.7821 1.4126 7 8 3.4380 4.0533 0.8325 8 8 4.3641 2.6889 2.6635 9 6 4.5203 1.6920 0.1829 10 6 3.3517 1.2493 -0.7207 11 1 3.3129 1.9039 -1.5914 12 7 3.5927 -0.1242 -1.1696 13 16 4.3802 -0.4017 -2.5998 14 8 3.6819 0.3972 -3.5450 15 8 4.4078 -1.8177 -2.7155 16 6 6.0522 0.2476 -2.3292 17 6 6.8882 0.0469 -3.5948 18 6 8.2775 0.5858 -3.3699 19 1 8.5380 1.0277 -2.4194 20 6 9.2157 0.5157 -4.3778 21 7 8.8984 -0.0218 -5.5353 22 14 10.9379 1.1831 -4.0986 23 1 10.9844 2.6139 -4.4935 24 1 11.9066 0.4116 -4.9183 25 1 11.2920 1.0542 -2.6622 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.2997 2.4143 1.7384 30 1 2.2478 0.9460 2.1379 31 1 4.9759 0.8320 0.6736 32 1 5.2620 2.2483 -0.3903 33 1 3.2910 -0.8711 -0.6292 34 1 6.5180 -0.2828 -1.4987 35 1 5.9956 1.3107 -2.0954 36 1 6.4225 0.5771 -4.4257 37 1 6.9447 -1.0163 -3.8282 38 1 8.0041 -0.3687 -5.6800 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594825905.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:49:05 Heat of formation + Delta-G solvation = -180.465730 kcal Electronic energy + Delta-G solvation = -24880.257849 eV Core-core repulsion = 20977.986505 eV Total energy + Delta-G solvation = -3902.271344 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 327.073 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.56069 -37.45686 -36.82238 -36.41649 -36.09992 -35.62049 -34.31344 -32.27308 -31.12467 -29.43835 -27.34453 -25.33865 -25.00599 -22.04684 -21.46641 -19.43335 -19.34937 -18.08801 -17.81224 -17.04649 -16.67334 -16.47998 -16.13204 -16.03906 -15.81815 -15.54540 -15.17576 -14.73655 -14.28071 -13.81521 -13.64403 -13.62500 -13.42029 -12.89982 -12.58347 -12.46045 -12.41414 -12.24068 -12.14994 -11.94119 -11.78345 -11.70460 -11.60596 -11.19946 -11.09381 -11.00963 -10.58560 -10.53220 -10.39724 -10.21202 -10.13252 -9.64335 -8.71178 -8.48858 -6.50764 -4.24188 -0.42409 0.57780 1.99632 2.72452 3.11934 3.19291 3.37388 3.40549 3.47034 3.56229 3.90107 4.02054 4.08518 4.14484 4.36659 4.44485 4.47097 4.54028 4.77727 4.94973 4.96447 4.99841 5.14058 5.23780 5.29416 5.31126 5.41961 5.51195 5.66013 6.25801 6.50600 6.90989 6.98938 7.05032 7.91617 8.26375 8.69293 9.48362 10.89136 Molecular weight = 327.07amu Principal moments of inertia in cm(-1) A = 0.014593 B = 0.004115 C = 0.003372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.245503 B = 6802.109877 C = 8302.730189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.364 6.364 3 C 0.094 3.906 4 H 0.097 0.903 5 C -0.613 4.613 6 S 2.392 3.608 7 O -0.922 6.922 8 O -0.927 6.927 9 C -0.615 4.615 10 C 0.157 3.843 11 H 0.123 0.877 12 N -1.100 6.100 13 S 2.588 3.412 14 O -0.965 6.965 15 O -0.961 6.961 16 C -0.586 4.586 17 C 0.014 3.986 18 C -0.601 4.601 19 H 0.056 0.944 20 C 0.017 3.983 21 N -0.905 5.905 22 Si 1.075 2.925 23 H -0.286 1.286 24 H -0.282 1.282 25 H -0.287 1.287 26 H 0.045 0.955 27 H 0.048 0.952 28 H 0.092 0.908 29 H 0.140 0.860 30 H 0.151 0.849 31 H 0.156 0.844 32 H 0.153 0.847 33 H 0.424 0.576 34 H 0.125 0.875 35 H 0.121 0.879 36 H 0.025 0.975 37 H 0.025 0.975 38 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.997 3.102 15.575 23.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.281 6.281 3 C 0.032 3.968 4 H 0.115 0.885 5 C -0.742 4.742 6 S 2.573 3.427 7 O -0.919 6.919 8 O -0.924 6.924 9 C -0.746 4.746 10 C 0.046 3.954 11 H 0.141 0.859 12 N -0.858 5.858 13 S 2.686 3.314 14 O -0.955 6.955 15 O -0.952 6.952 16 C -0.719 4.719 17 C -0.025 4.025 18 C -0.640 4.640 19 H 0.074 0.926 20 C -0.188 4.188 21 N -0.540 5.540 22 Si 0.903 3.097 23 H -0.212 1.212 24 H -0.208 1.208 25 H -0.214 1.214 26 H 0.064 0.936 27 H 0.067 0.933 28 H 0.110 0.890 29 H 0.158 0.842 30 H 0.169 0.831 31 H 0.174 0.826 32 H 0.171 0.829 33 H 0.261 0.739 34 H 0.144 0.856 35 H 0.139 0.861 36 H 0.043 0.957 37 H 0.043 0.957 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -15.522 3.693 14.458 21.532 hybrid contribution -1.691 -0.761 1.103 2.157 sum -17.213 2.932 15.561 23.389 Atomic orbital electron populations 1.22923 0.80108 1.03517 1.00453 1.87867 1.20341 1.25313 1.94612 1.22332 0.95455 0.87610 0.91360 0.88519 1.31098 1.22219 1.16110 1.04780 1.09094 0.79259 0.77324 0.77071 1.93674 1.84086 1.35371 1.78745 1.93645 1.71722 1.87522 1.39525 1.31293 1.09361 1.17442 1.16486 1.20982 0.89635 0.86554 0.98198 0.85906 1.55643 1.74818 1.11568 1.43797 1.05731 0.77860 0.74790 0.73051 1.93549 1.71077 1.71559 1.59320 1.93570 1.87589 1.29262 1.84739 1.30439 1.19082 1.11744 1.10632 1.19082 0.96434 0.97965 0.88979 1.21854 0.95619 1.44221 1.02337 0.92573 1.25965 1.04887 0.95230 0.92732 1.70758 1.23194 1.36153 1.23922 0.83451 0.74502 0.76394 0.75372 1.21235 1.20780 1.21350 0.93638 0.93296 0.88992 0.84167 0.83086 0.82618 0.82874 0.73939 0.85642 0.86100 0.95716 0.95716 0.91896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 10.78 101.05 1.09 1.25 16 2 O -0.36 -3.02 8.29 -35.23 -0.29 -3.31 16 3 C 0.09 0.68 3.09 -26.42 -0.08 0.60 16 4 H 0.10 0.55 7.77 -51.93 -0.40 0.14 16 5 C -0.61 -3.18 6.96 37.79 0.26 -2.92 16 6 S 2.39 18.67 6.08 -107.50 -0.65 18.01 16 7 O -0.92 -10.14 18.17 -57.67 -1.05 -11.19 16 8 O -0.93 -10.44 18.17 -57.67 -1.05 -11.49 16 9 C -0.62 -4.81 6.29 37.79 0.24 -4.58 16 10 C 0.16 1.46 3.16 -67.61 -0.21 1.25 16 11 H 0.12 1.11 7.44 -51.93 -0.39 0.72 16 12 N -1.10 -12.65 4.84 -4.62 -0.02 -12.67 16 13 S 2.59 42.89 5.44 -107.50 -0.58 42.30 16 14 O -0.97 -18.56 17.37 -57.54 -1.00 -19.56 16 15 O -0.96 -18.98 18.08 -57.54 -1.04 -20.02 16 16 C -0.59 -10.43 5.50 37.16 0.20 -10.23 16 17 C 0.01 0.35 4.29 -27.88 -0.12 0.23 16 18 C -0.60 -16.35 9.11 -34.44 -0.31 -16.66 16 19 H 0.06 1.46 7.74 -52.48 -0.41 1.05 16 20 C 0.02 0.47 5.46 -17.82 -0.10 0.38 16 21 N -0.91 -27.26 13.65 55.43 0.76 -26.51 16 22 Si 1.08 24.54 29.90 -169.99 -5.08 19.46 16 23 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 25 H -0.29 -6.18 7.11 56.52 0.40 -5.78 16 26 H 0.04 0.20 8.10 -51.93 -0.42 -0.22 16 27 H 0.05 0.28 8.07 -51.93 -0.42 -0.14 16 28 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.14 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.15 0.63 8.08 -51.93 -0.42 0.21 16 31 H 0.16 0.97 8.05 -51.93 -0.42 0.55 16 32 H 0.15 1.10 7.07 -51.93 -0.37 0.73 16 33 H 0.42 4.28 7.47 -34.47 -0.26 4.02 16 34 H 0.13 1.99 8.14 -51.93 -0.42 1.57 16 35 H 0.12 1.84 6.79 -51.93 -0.35 1.49 16 36 H 0.02 0.63 8.01 -51.93 -0.42 0.21 16 37 H 0.02 0.63 8.01 -51.93 -0.42 0.22 16 38 H 0.27 8.12 7.22 -40.82 -0.29 7.83 16 LS Contribution 340.19 15.07 5.13 5.13 Total: -1.00 -40.79 340.19 -8.96 -49.75 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -5.04 Total: 0.75 kcal Atomic # 6 Polarization: -31.64 SS G_CDS: 0.97 Total: -30.68 kcal Atomic # 7 Polarization: -39.91 SS G_CDS: 0.73 Total: -39.17 kcal Atomic # 8 Polarization: -61.13 SS G_CDS: -4.43 Total: -65.56 kcal Atomic # 14 Polarization: 24.54 SS G_CDS: -5.08 Total: 19.46 kcal Atomic # 16 Polarization: 61.56 SS G_CDS: -1.24 Total: 60.32 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -40.79 -8.96 -49.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594825905.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.713 kcal (2) G-P(sol) polarization free energy of solvation -40.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds