Wall clock time and date at job start Fri Apr 10 2020 14:49:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42909 * 114.00109 * 2 1 4 4 H 1.09004 * 108.88599 * 328.67130 * 3 2 1 5 5 C 1.54204 * 108.92193 * 87.20444 * 3 2 1 6 6 S 1.83830 * 102.85718 * 145.79167 * 5 3 2 7 7 O 1.42099 * 109.80939 * 77.68650 * 6 5 3 8 8 O 1.42098 * 109.81193 * 211.99854 * 6 5 3 9 9 C 1.83816 * 94.23614 * 324.85995 * 6 5 3 10 10 C 1.52381 * 108.92773 * 209.99932 * 3 2 1 11 11 H 1.09000 * 108.92093 * 118.64570 * 10 3 2 12 12 N 1.46502 * 108.92335 * 359.97438 * 10 3 2 13 13 S 1.65604 * 119.99597 * 145.00255 * 12 10 3 14 14 O 1.42102 * 104.27479 * 308.92606 * 13 12 10 15 15 O 1.42097 * 104.27323 * 181.06987 * 13 12 10 16 16 C 1.81391 * 104.45041 * 64.99658 * 13 12 10 17 17 C 1.53003 * 109.46896 * 179.97438 * 16 13 12 18 18 C 1.50703 * 109.47038 * 180.02562 * 17 16 13 19 19 H 1.08006 * 120.00159 * 359.97438 * 18 17 16 20 20 C 1.37877 * 120.00120 * 180.02562 * 18 17 16 21 21 N 1.31514 * 120.00089 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99938 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47297 * 269.99556 * 22 20 18 24 24 H 1.48503 * 109.47261 * 149.99737 * 22 20 18 25 25 H 1.48500 * 109.47454 * 29.99730 * 22 20 18 26 26 H 1.09000 * 109.47435 * 299.99931 * 1 2 3 27 27 H 1.09005 * 109.47014 * 60.00007 * 1 2 3 28 28 H 1.09003 * 109.46815 * 179.97438 * 1 2 3 29 29 H 1.09000 * 110.73813 * 264.12944 * 5 3 2 30 30 H 1.08995 * 110.73880 * 27.27212 * 5 3 2 31 31 H 1.09000 * 110.73881 * 276.79571 * 9 6 5 32 32 H 1.09004 * 110.73814 * 153.48204 * 9 6 5 33 33 H 0.96994 * 120.00175 * 324.99903 * 12 10 3 34 34 H 1.08996 * 109.47327 * 60.00078 * 16 13 12 35 35 H 1.08996 * 109.47109 * 299.99973 * 16 13 12 36 36 H 1.09003 * 109.46825 * 60.00440 * 17 16 13 37 37 H 1.08996 * 109.47396 * 300.00013 * 17 16 13 38 38 H 0.96998 * 119.99255 * 0.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3490 1.9862 -0.5362 5 6 2.1487 1.7913 1.4570 6 16 3.6965 2.7821 1.4126 7 8 3.4380 4.0533 0.8325 8 8 4.3641 2.6889 2.6635 9 6 4.5203 1.6920 0.1829 10 6 3.3517 1.2493 -0.7207 11 1 3.3129 1.9039 -1.5914 12 7 3.5927 -0.1242 -1.1696 13 16 4.3802 -0.4017 -2.5998 14 8 3.6819 0.3972 -3.5450 15 8 4.4078 -1.8177 -2.7155 16 6 6.0522 0.2476 -2.3292 17 6 6.8882 0.0469 -3.5948 18 6 8.2775 0.5858 -3.3699 19 1 8.5380 1.0277 -2.4194 20 6 9.2157 0.5157 -4.3778 21 7 8.8984 -0.0218 -5.5353 22 14 10.9379 1.1831 -4.0986 23 1 10.9844 2.6139 -4.4935 24 1 11.9066 0.4116 -4.9183 25 1 11.2920 1.0542 -2.6622 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.2997 2.4143 1.7384 30 1 2.2478 0.9460 2.1379 31 1 4.9759 0.8320 0.6736 32 1 5.2620 2.2483 -0.3903 33 1 3.2910 -0.8711 -0.6292 34 1 6.5180 -0.2828 -1.4987 35 1 5.9956 1.3107 -2.0954 36 1 6.4225 0.5771 -4.4257 37 1 6.9447 -1.0163 -3.8282 38 1 8.0041 -0.3687 -5.6800 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594825905.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:49:05 Heat of formation + Delta-G solvation = -216.851805 kcal Electronic energy + Delta-G solvation = -24881.835668 eV Core-core repulsion = 20977.986505 eV Total energy + Delta-G solvation = -3903.849163 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 327.073 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.17418 -38.26010 -38.18267 -37.15355 -37.11896 -36.83156 -36.28539 -33.02813 -32.97464 -30.09511 -27.81487 -27.08875 -25.81471 -23.92696 -22.14270 -20.60625 -20.00517 -19.43417 -18.74697 -18.52250 -17.50803 -17.35744 -17.18135 -17.02655 -16.72210 -16.23301 -16.19206 -15.66138 -15.49631 -15.19489 -14.93451 -14.86144 -14.13523 -14.08245 -14.01008 -13.34606 -13.30025 -13.25959 -13.19796 -13.15886 -12.93107 -12.84023 -12.69014 -12.47508 -12.29807 -12.18079 -11.98598 -11.91201 -11.84407 -11.61169 -10.88138 -10.70533 -10.61515 -10.46115 -8.73457 -6.47615 -1.04476 -0.77704 1.40630 1.54091 1.62772 1.68798 1.79751 2.49466 2.54225 2.55047 2.71648 2.90176 3.10938 3.12019 3.38880 3.46257 3.52523 3.81921 3.84927 3.97569 4.02657 4.28093 4.36527 4.53510 4.57487 4.59464 4.64594 4.77353 4.88755 4.93630 5.03608 5.08447 5.82530 5.95184 6.09982 6.22182 6.46783 7.35114 8.66365 Molecular weight = 327.07amu Principal moments of inertia in cm(-1) A = 0.014593 B = 0.004115 C = 0.003372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.245503 B = 6802.109877 C = 8302.730189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.381 6.381 3 C 0.088 3.912 4 H 0.116 0.884 5 C -0.585 4.585 6 S 2.408 3.592 7 O -0.958 6.958 8 O -0.965 6.965 9 C -0.623 4.623 10 C 0.142 3.858 11 H 0.123 0.877 12 N -1.080 6.080 13 S 2.617 3.383 14 O -0.993 6.993 15 O -0.996 6.996 16 C -0.589 4.589 17 C 0.003 3.997 18 C -0.611 4.611 19 H 0.070 0.930 20 C -0.041 4.041 21 N -0.937 5.937 22 Si 1.123 2.877 23 H -0.271 1.271 24 H -0.286 1.286 25 H -0.263 1.263 26 H 0.066 0.934 27 H 0.049 0.951 28 H 0.096 0.904 29 H 0.171 0.829 30 H 0.169 0.831 31 H 0.174 0.826 32 H 0.158 0.842 33 H 0.434 0.566 34 H 0.148 0.852 35 H 0.147 0.853 36 H 0.004 0.996 37 H 0.002 0.998 38 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.859 3.772 17.938 25.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.299 6.299 3 C 0.026 3.974 4 H 0.133 0.867 5 C -0.717 4.717 6 S 2.593 3.407 7 O -0.955 6.955 8 O -0.962 6.962 9 C -0.753 4.753 10 C 0.032 3.968 11 H 0.141 0.859 12 N -0.843 5.843 13 S 2.714 3.286 14 O -0.983 6.983 15 O -0.986 6.986 16 C -0.721 4.721 17 C -0.036 4.036 18 C -0.650 4.650 19 H 0.088 0.912 20 C -0.239 4.239 21 N -0.575 5.575 22 Si 0.943 3.057 23 H -0.197 1.197 24 H -0.212 1.212 25 H -0.187 1.187 26 H 0.085 0.915 27 H 0.067 0.933 28 H 0.114 0.886 29 H 0.188 0.812 30 H 0.187 0.813 31 H 0.192 0.808 32 H 0.176 0.824 33 H 0.273 0.727 34 H 0.166 0.834 35 H 0.165 0.835 36 H 0.023 0.977 37 H 0.020 0.980 38 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -16.373 4.382 16.843 23.895 hybrid contribution -1.568 -1.006 0.411 1.908 sum -17.942 3.377 17.254 25.120 Atomic orbital electron populations 1.23121 0.78950 1.04270 1.01559 1.87833 1.21655 1.25655 1.94795 1.22432 0.94398 0.88026 0.92498 0.86660 1.30964 1.20591 1.16159 1.03964 1.08412 0.79783 0.76788 0.75762 1.93626 1.84805 1.37983 1.79090 1.93597 1.73436 1.88038 1.41081 1.31364 1.09283 1.18218 1.16449 1.21360 0.91579 0.84791 0.99107 0.85877 1.55081 1.73600 1.13308 1.42347 1.04551 0.77139 0.73347 0.73596 1.93512 1.71412 1.72034 1.61333 1.93518 1.87899 1.31347 1.85819 1.30405 1.19507 1.14212 1.07961 1.18993 0.96821 0.96084 0.91665 1.22358 0.96765 1.43202 1.02649 0.91206 1.27567 1.09130 0.94900 0.92296 1.70896 1.22503 1.38549 1.25502 0.82873 0.69836 0.76369 0.76628 1.19676 1.21162 1.18699 0.91494 0.93250 0.88582 0.81161 0.81270 0.80846 0.82409 0.72652 0.83412 0.83458 0.97749 0.97967 0.93539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 10.78 113.37 1.22 1.37 16 2 O -0.38 -5.11 8.29 -148.98 -1.23 -6.35 16 3 C 0.09 0.99 3.09 30.80 0.10 1.09 16 4 H 0.12 0.90 7.77 -2.39 -0.02 0.89 16 5 C -0.59 -3.81 6.96 72.39 0.50 -3.30 16 6 S 2.41 32.67 6.08 -56.49 -0.34 32.32 16 7 O -0.96 -19.79 18.17 -127.53 -2.32 -22.10 16 8 O -0.96 -20.26 18.17 -127.53 -2.32 -22.57 16 9 C -0.62 -8.30 6.29 72.39 0.46 -7.84 16 10 C 0.14 2.29 3.16 45.19 0.14 2.44 16 11 H 0.12 2.00 7.44 -2.39 -0.02 1.99 16 12 N -1.08 -22.71 4.84 -168.53 -0.82 -23.53 16 13 S 2.62 85.38 5.44 -56.49 -0.31 85.07 16 14 O -0.99 -38.12 17.37 -127.65 -2.22 -40.34 16 15 O -1.00 -39.37 18.08 -127.65 -2.31 -41.68 16 16 C -0.59 -20.47 5.50 71.98 0.40 -20.07 16 17 C 0.00 0.16 4.29 29.85 0.13 0.29 16 18 C -0.61 -33.21 9.11 25.60 0.23 -32.97 16 19 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 20 C -0.04 -2.34 5.46 84.65 0.46 -1.88 16 21 N -0.94 -58.02 13.65 21.45 0.29 -57.73 16 22 Si 1.12 48.73 29.90 68.60 2.05 50.78 16 23 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 24 H -0.29 -12.49 7.11 99.48 0.71 -11.78 16 25 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 26 H 0.07 0.31 8.10 -2.39 -0.02 0.29 16 27 H 0.05 0.43 8.07 -2.38 -0.02 0.41 16 28 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.17 0.21 8.14 -2.39 -0.02 0.19 16 30 H 0.17 0.63 8.08 -2.39 -0.02 0.61 16 31 H 0.17 1.66 8.05 -2.39 -0.02 1.64 16 32 H 0.16 1.95 7.07 -2.38 -0.02 1.93 16 33 H 0.43 7.76 7.47 -96.75 -0.72 7.03 16 34 H 0.15 4.42 8.14 -2.39 -0.02 4.40 16 35 H 0.15 4.25 6.79 -2.39 -0.02 4.23 16 36 H 0.00 0.23 8.01 -2.39 -0.02 0.21 16 37 H 0.00 0.11 8.01 -2.39 -0.02 0.09 16 38 H 0.26 16.06 7.22 -92.71 -0.67 15.39 16 Total: -1.00 -89.73 340.19 -5.41 -95.15 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: 0.46 Total: 11.87 kcal Atomic # 6 Polarization: -64.53 SS G_CDS: 3.64 Total: -60.89 kcal Atomic # 7 Polarization: -80.73 SS G_CDS: -0.52 Total: -81.25 kcal Atomic # 8 Polarization: -122.65 SS G_CDS: -10.39 Total: -133.04 kcal Atomic # 14 Polarization: 48.73 SS G_CDS: 2.05 Total: 50.78 kcal Atomic # 16 Polarization: 118.05 SS G_CDS: -0.65 Total: 117.40 kcal Total: -89.73 -5.41 -95.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594825905.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.705 kcal (2) G-P(sol) polarization free energy of solvation -89.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -211.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -216.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds