Wall clock time and date at job start Fri Apr 10 2020 14:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.42898 * 114.00180 * 2 1 4 4 H 1.08999 * 110.04804 * 28.59571 * 3 2 1 5 5 C 1.55046 * 110.02838 * 267.19515 * 3 2 1 6 6 S 1.83294 * 102.56554 * 198.27567 * 5 3 2 7 7 O 1.42094 * 109.35023 * 269.81419 * 6 5 3 8 8 O 1.42097 * 109.35023 * 136.60999 * 6 5 3 9 9 C 1.82920 * 97.01706 * 23.21201 * 6 5 3 10 10 C 1.53876 * 110.02629 * 149.99879 * 3 2 1 11 11 H 1.08996 * 109.53888 * 286.26426 * 10 3 2 12 12 N 1.46506 * 109.64399 * 46.62399 * 10 3 2 13 13 S 1.65603 * 119.99525 * 215.72859 * 12 10 3 14 14 O 1.42101 * 104.27269 * 181.07075 * 13 12 10 15 15 O 1.42102 * 104.27723 * 308.92511 * 13 12 10 16 16 C 1.81395 * 104.45161 * 65.00003 * 13 12 10 17 17 C 1.52998 * 109.47095 * 179.97438 * 16 13 12 18 18 C 1.50702 * 109.47349 * 179.97438 * 17 16 13 19 19 H 1.07999 * 119.99584 * 359.97438 * 18 17 16 20 20 C 1.37874 * 120.00235 * 180.02562 * 18 17 16 21 21 N 1.31519 * 119.99961 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00048 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46884 * 359.97438 * 22 20 18 24 24 H 1.48492 * 109.47400 * 119.99880 * 22 20 18 25 25 H 1.48504 * 109.46751 * 239.99582 * 22 20 18 26 26 H 1.09006 * 109.46499 * 300.00116 * 1 2 3 27 27 H 1.09001 * 109.47170 * 59.99517 * 1 2 3 28 28 H 1.08994 * 109.46782 * 179.97438 * 1 2 3 29 29 H 1.09000 * 110.79317 * 80.00699 * 5 3 2 30 30 H 1.08999 * 110.95066 * 316.61612 * 5 3 2 31 31 H 1.09001 * 110.31525 * 243.22065 * 9 6 5 32 32 H 1.08995 * 110.40685 * 121.07016 * 9 6 5 33 33 H 0.96993 * 119.99868 * 35.72451 * 12 10 3 34 34 H 1.09003 * 109.46883 * 299.99581 * 16 13 12 35 35 H 1.08997 * 109.47697 * 59.99752 * 16 13 12 36 36 H 1.08993 * 109.47450 * 300.00384 * 17 16 13 37 37 H 1.09007 * 109.46874 * 60.00058 * 17 16 13 38 38 H 0.96998 * 119.99929 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 1 1.3410 2.0125 0.4901 5 6 2.2915 1.7615 -1.4549 6 16 3.4989 3.1205 -1.2206 7 8 2.8019 4.3511 -1.0832 8 8 4.5390 2.9971 -2.1808 9 6 4.1188 2.5889 0.4162 10 6 3.3685 1.2775 0.7229 11 1 3.2078 1.1899 1.7974 12 7 4.1558 0.1370 0.2480 13 16 5.1381 -0.6854 1.2975 14 8 5.7483 -1.6865 0.4946 15 8 5.9147 0.3296 1.9189 16 6 3.9973 -1.4351 2.4920 17 6 4.7939 -2.2325 3.5267 18 6 3.8462 -2.8549 4.5195 19 1 2.7822 -2.6971 4.4224 20 6 4.3375 -3.6249 5.5523 21 7 5.6333 -3.8166 5.6708 22 14 3.1628 -4.3969 6.7824 23 1 1.7671 -4.0323 6.4300 24 1 3.3122 -5.8739 6.7499 25 1 3.4753 -3.8977 8.1457 26 1 -0.3632 0.5139 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 1.3811 2.1301 -1.9277 30 1 2.7287 0.9521 -2.0395 31 1 3.8893 3.3416 1.1705 32 1 5.1931 2.4097 0.3759 33 1 4.1018 -0.1365 -0.6810 34 1 3.4306 -0.6512 2.9946 35 1 3.3109 -2.1018 1.9700 36 1 5.3603 -3.0163 3.0239 37 1 5.4805 -1.5661 4.0489 38 1 5.9789 -4.3585 6.3972 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594825907.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:49:08 Heat of formation + Delta-G solvation = -219.591015 kcal Electronic energy + Delta-G solvation = -24881.623684 eV Core-core repulsion = 20977.655740 eV Total energy + Delta-G solvation = -3903.967944 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 327.073 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.00505 -38.17183 -38.13497 -37.17929 -37.05791 -36.86692 -35.86527 -33.09858 -32.65558 -30.30734 -27.74059 -27.56180 -25.48162 -23.58986 -22.36242 -20.52154 -19.90284 -19.23380 -18.60662 -18.32664 -17.49774 -17.21770 -17.06801 -16.82839 -16.63583 -16.50022 -16.29907 -16.02235 -15.32959 -15.03505 -14.72536 -14.46995 -14.27816 -13.80311 -13.66654 -13.37319 -13.27789 -13.18299 -13.14552 -13.06835 -12.99374 -12.92197 -12.76768 -12.71682 -12.22146 -12.17809 -12.07407 -11.84680 -11.70492 -11.50276 -11.19620 -10.64319 -10.62656 -10.52996 -8.23793 -6.37226 -1.00357 -0.68369 1.42967 1.43331 1.50947 1.56369 1.75822 2.39798 2.46228 2.62660 2.80471 3.01753 3.10307 3.26496 3.34324 3.46771 3.64266 3.90199 3.94644 4.06651 4.11639 4.26227 4.38799 4.63629 4.64398 4.69054 4.80711 4.85503 4.88459 5.02798 5.30712 5.33222 5.71561 5.98472 6.09144 6.17017 6.77219 7.33103 8.88680 Molecular weight = 327.07amu Principal moments of inertia in cm(-1) A = 0.019388 B = 0.003642 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.858372 B = 7686.197691 C = 8448.548105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.373 6.373 3 C 0.087 3.913 4 H 0.140 0.860 5 C -0.605 4.605 6 S 2.403 3.597 7 O -0.961 6.961 8 O -0.976 6.976 9 C -0.607 4.607 10 C 0.147 3.853 11 H 0.139 0.861 12 N -1.101 6.101 13 S 2.616 3.384 14 O -0.999 6.999 15 O -0.988 6.988 16 C -0.582 4.582 17 C 0.018 3.982 18 C -0.534 4.534 19 H 0.078 0.922 20 C -0.005 4.005 21 N -0.936 5.936 22 Si 0.972 3.028 23 H -0.253 1.253 24 H -0.281 1.281 25 H -0.279 1.279 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.091 0.909 29 H 0.172 0.828 30 H 0.156 0.844 31 H 0.183 0.817 32 H 0.147 0.853 33 H 0.427 0.573 34 H 0.148 0.852 35 H 0.143 0.857 36 H 0.003 0.997 37 H 0.008 0.992 38 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.356 13.186 -12.801 23.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.292 6.292 3 C 0.026 3.974 4 H 0.157 0.843 5 C -0.737 4.737 6 S 2.589 3.411 7 O -0.958 6.958 8 O -0.973 6.973 9 C -0.739 4.739 10 C 0.037 3.963 11 H 0.156 0.844 12 N -0.861 5.861 13 S 2.712 3.288 14 O -0.990 6.990 15 O -0.978 6.978 16 C -0.715 4.715 17 C -0.021 4.021 18 C -0.573 4.573 19 H 0.096 0.904 20 C -0.203 4.203 21 N -0.576 5.576 22 Si 0.796 3.204 23 H -0.177 1.177 24 H -0.207 1.207 25 H -0.205 1.205 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.109 0.891 29 H 0.190 0.810 30 H 0.174 0.826 31 H 0.200 0.800 32 H 0.165 0.835 33 H 0.264 0.736 34 H 0.166 0.834 35 H 0.161 0.839 36 H 0.021 0.979 37 H 0.027 0.973 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.893 13.765 -13.196 23.018 hybrid contribution -0.760 -1.343 0.926 1.800 sum -13.653 12.421 -12.270 22.164 Atomic orbital electron populations 1.23157 0.79036 1.04171 1.01824 1.88010 1.21533 1.25026 1.94584 1.23116 0.94286 0.88859 0.91134 0.84250 1.31167 1.18187 1.18449 1.05887 1.08401 0.77120 0.77336 0.78226 1.93594 1.74072 1.41386 1.86742 1.93585 1.56468 1.87720 1.59553 1.31108 1.12474 1.07321 1.22981 1.21497 0.88556 0.83157 1.03051 0.84383 1.55416 1.62997 1.43205 1.24464 1.04670 0.75516 0.73580 0.74985 1.93514 1.75508 1.61776 1.68164 1.93520 1.67961 1.57886 1.78403 1.30287 1.15163 1.12443 1.13573 1.18843 0.95402 0.94433 0.93397 1.21547 0.94151 1.30934 1.10624 0.90381 1.26103 0.96935 0.96976 1.00264 1.70113 1.14115 1.40212 1.33115 0.85286 0.79281 0.77799 0.78006 1.17672 1.20710 1.20522 0.92061 0.91989 0.89089 0.81034 0.82577 0.79953 0.83477 0.73596 0.83400 0.83867 0.97864 0.97327 0.92510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 10.85 113.37 1.23 1.35 16 2 O -0.37 -4.95 10.03 -148.98 -1.49 -6.44 16 3 C 0.09 0.84 2.81 31.59 0.09 0.93 16 4 H 0.14 0.36 7.81 -2.39 -0.02 0.35 16 5 C -0.61 -5.05 6.70 72.68 0.49 -4.56 16 6 S 2.40 35.74 6.11 -56.49 -0.34 35.40 16 7 O -0.96 -18.98 18.14 -127.49 -2.31 -21.29 16 8 O -0.98 -23.55 18.14 -127.49 -2.31 -25.86 16 9 C -0.61 -8.42 6.94 72.38 0.50 -7.92 16 10 C 0.15 2.17 2.85 45.68 0.13 2.30 16 11 H 0.14 1.64 7.18 -2.39 -0.02 1.62 16 12 N -1.10 -23.26 4.92 -166.51 -0.82 -24.08 16 13 S 2.62 86.13 5.38 -56.49 -0.30 85.83 16 14 O -1.00 -40.57 18.08 -127.65 -2.31 -42.88 16 15 O -0.99 -37.35 17.68 -127.65 -2.26 -39.61 16 16 C -0.58 -20.21 5.90 71.98 0.42 -19.78 16 17 C 0.02 0.91 4.98 29.85 0.15 1.06 16 18 C -0.53 -28.45 9.11 25.60 0.23 -28.22 16 19 H 0.08 3.80 7.74 -2.91 -0.02 3.78 16 20 C 0.00 -0.25 5.46 84.65 0.46 0.21 16 21 N -0.94 -56.00 13.29 21.45 0.28 -55.72 16 22 Si 0.97 42.08 29.54 68.60 2.03 44.10 16 23 H -0.25 -10.08 7.11 99.48 0.71 -9.38 16 24 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 25 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 26 H 0.06 0.37 8.10 -2.38 -0.02 0.35 16 27 H 0.06 0.31 8.14 -2.39 -0.02 0.29 16 28 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.17 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.16 1.20 7.60 -2.39 -0.02 1.18 16 31 H 0.18 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.15 2.59 7.92 -2.39 -0.02 2.57 16 33 H 0.43 7.44 8.00 -96.75 -0.77 6.67 16 34 H 0.15 4.16 7.46 -2.39 -0.02 4.14 16 35 H 0.14 4.45 8.14 -2.39 -0.02 4.43 16 36 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 37 H 0.01 0.46 8.14 -2.38 -0.02 0.44 16 38 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 Total: -1.00 -88.46 345.34 -5.83 -94.29 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: 0.31 Total: 10.88 kcal Atomic # 6 Polarization: -58.34 SS G_CDS: 3.71 Total: -54.63 kcal Atomic # 7 Polarization: -79.26 SS G_CDS: -0.54 Total: -79.79 kcal Atomic # 8 Polarization: -125.40 SS G_CDS: -10.69 Total: -136.08 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.10 kcal Atomic # 16 Polarization: 121.88 SS G_CDS: -0.65 Total: 121.23 kcal Total: -88.46 -5.83 -94.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594825907.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.304 kcal (2) G-P(sol) polarization free energy of solvation -88.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -213.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -219.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds