Wall clock time and date at job start Fri Apr 10 2020 14:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42903 * 114.00089 * 2 1 4 4 H 1.08999 * 108.88874 * 31.33099 * 3 2 1 5 5 C 1.54203 * 108.92824 * 272.78896 * 3 2 1 6 6 S 1.83815 * 102.86520 * 264.30252 * 5 3 2 7 7 O 1.42097 * 109.81555 * 77.68223 * 6 5 3 8 8 O 1.42104 * 109.81213 * 212.00078 * 6 5 3 9 9 C 1.83823 * 94.23567 * 324.85773 * 6 5 3 10 10 C 1.52386 * 108.92478 * 149.99885 * 3 2 1 11 11 H 1.09000 * 108.92366 * 0.02562 * 10 3 2 12 12 N 1.46503 * 108.92681 * 241.48703 * 10 3 2 13 13 S 1.65598 * 119.99841 * 144.99816 * 12 10 3 14 14 O 1.42098 * 104.27604 * 181.07560 * 13 12 10 15 15 O 1.42102 * 104.27758 * 308.93345 * 13 12 10 16 16 C 1.81402 * 104.44671 * 65.00456 * 13 12 10 17 17 C 1.53006 * 109.46934 * 180.02562 * 16 13 12 18 18 C 1.50701 * 109.46658 * 180.02562 * 17 16 13 19 19 H 1.08001 * 120.00670 * 359.97438 * 18 17 16 20 20 C 1.37883 * 119.99418 * 180.02562 * 18 17 16 21 21 N 1.31511 * 120.00089 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99666 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47328 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47298 * 119.99792 * 22 20 18 25 25 H 1.48501 * 109.46916 * 239.99697 * 22 20 18 26 26 H 1.09000 * 109.47221 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47204 * 299.99815 * 1 2 3 28 28 H 1.09007 * 109.47279 * 60.00004 * 1 2 3 29 29 H 1.09005 * 110.73634 * 22.64726 * 5 3 2 30 30 H 1.09000 * 110.73683 * 145.95414 * 5 3 2 31 31 H 1.08998 * 110.73832 * 276.79852 * 9 6 5 32 32 H 1.09005 * 110.73667 * 153.47991 * 9 6 5 33 33 H 0.96998 * 120.00115 * 325.00574 * 12 10 3 34 34 H 1.08994 * 109.47277 * 299.99542 * 16 13 12 35 35 H 1.08996 * 109.47049 * 59.99912 * 16 13 12 36 36 H 1.09003 * 109.46538 * 299.99642 * 17 16 13 37 37 H 1.08996 * 109.47353 * 60.00062 * 17 16 13 38 38 H 0.97001 * 119.99757 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3490 1.9861 0.5363 5 6 2.1488 1.7913 -1.4569 6 16 3.8836 1.3484 -1.8727 7 8 3.9730 -0.0429 -2.1474 8 8 4.4156 2.2944 -2.7900 9 6 4.5202 1.6919 -0.1828 10 6 3.3516 1.2492 0.7208 11 1 3.5308 0.2272 1.0548 12 7 3.2985 2.1266 1.8928 13 16 4.1043 1.7079 3.2776 14 8 3.8093 2.7599 4.1863 15 8 3.6845 0.3756 3.5382 16 6 5.8566 1.7433 2.8099 17 6 6.7151 1.3688 4.0198 18 6 8.1708 1.3989 3.6313 19 1 8.4553 1.6586 2.6224 20 6 9.1395 1.0937 4.5638 21 7 8.7931 0.7769 5.7923 22 14 10.9440 1.1302 4.0822 23 1 11.0671 1.5129 2.6526 24 1 11.6611 2.1214 4.9240 25 1 11.5382 -0.2153 4.2869 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.4498 1.2654 -2.1073 30 1 1.9999 2.8692 -1.5201 31 1 4.7247 2.7550 -0.0561 32 1 5.4120 1.0992 0.0216 33 1 2.7912 2.9526 1.8577 34 1 6.0324 1.0294 2.0053 35 1 6.1221 2.7448 2.4715 36 1 6.5393 2.0825 4.8247 37 1 6.4494 0.3672 4.3578 38 1 9.4747 0.5625 6.4484 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594825910.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:49:14 Heat of formation + Delta-G solvation = -216.910458 kcal Electronic energy + Delta-G solvation = -24790.090999 eV Core-core repulsion = 20886.239293 eV Total energy + Delta-G solvation = -3903.851706 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 327.073 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.16622 -38.19611 -38.08253 -37.21192 -37.05793 -36.96920 -35.88400 -33.13461 -32.81532 -30.16703 -27.91705 -27.56785 -25.64731 -23.55777 -22.33732 -20.58513 -19.93959 -19.28181 -18.57776 -18.32258 -17.65047 -17.17728 -17.07956 -16.98246 -16.66757 -16.51073 -16.22409 -16.05908 -15.51644 -15.06492 -14.73861 -14.47367 -14.16593 -13.87187 -13.72444 -13.36750 -13.23779 -13.20038 -13.15131 -13.10954 -13.01406 -12.92953 -12.77629 -12.71795 -12.23271 -12.21832 -12.10077 -11.94125 -11.65199 -11.49878 -11.16982 -10.80067 -10.64281 -10.53861 -8.25248 -6.38351 -0.97687 -0.72475 1.41751 1.42508 1.43967 1.55106 1.73783 2.38244 2.46157 2.60949 2.78899 2.98605 3.09125 3.19909 3.31587 3.46711 3.52642 3.90061 3.98188 4.09645 4.16176 4.22749 4.37410 4.50628 4.58164 4.68689 4.75999 4.78723 4.88154 4.94045 5.30050 5.31090 5.70412 6.05249 6.07017 6.08448 6.76219 7.32063 8.87152 Molecular weight = 327.07amu Principal moments of inertia in cm(-1) A = 0.014842 B = 0.003994 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.126620 B = 7008.840539 C = 8268.154224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.399 6.399 3 C 0.082 3.918 4 H 0.129 0.871 5 C -0.579 4.579 6 S 2.391 3.609 7 O -0.964 6.964 8 O -0.966 6.966 9 C -0.616 4.616 10 C 0.145 3.855 11 H 0.114 0.886 12 N -1.091 6.091 13 S 2.615 3.385 14 O -0.991 6.991 15 O -0.995 6.995 16 C -0.593 4.593 17 C 0.018 3.982 18 C -0.536 4.536 19 H 0.079 0.921 20 C -0.003 4.003 21 N -0.934 5.934 22 Si 0.970 3.030 23 H -0.255 1.255 24 H -0.279 1.279 25 H -0.281 1.281 26 H 0.094 0.906 27 H 0.055 0.945 28 H 0.069 0.931 29 H 0.163 0.837 30 H 0.189 0.811 31 H 0.185 0.815 32 H 0.156 0.844 33 H 0.434 0.566 34 H 0.144 0.856 35 H 0.153 0.847 36 H 0.008 0.992 37 H 0.006 0.994 38 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.690 5.315 -16.816 24.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.318 6.318 3 C 0.021 3.979 4 H 0.146 0.854 5 C -0.711 4.711 6 S 2.577 3.423 7 O -0.961 6.961 8 O -0.963 6.963 9 C -0.746 4.746 10 C 0.035 3.965 11 H 0.132 0.868 12 N -0.853 5.853 13 S 2.712 3.288 14 O -0.982 6.982 15 O -0.984 6.984 16 C -0.725 4.725 17 C -0.020 4.020 18 C -0.575 4.575 19 H 0.097 0.903 20 C -0.202 4.202 21 N -0.574 5.574 22 Si 0.794 3.206 23 H -0.178 1.178 24 H -0.205 1.205 25 H -0.207 1.207 26 H 0.112 0.888 27 H 0.073 0.927 28 H 0.088 0.912 29 H 0.180 0.820 30 H 0.207 0.793 31 H 0.203 0.797 32 H 0.174 0.826 33 H 0.273 0.727 34 H 0.163 0.837 35 H 0.171 0.829 36 H 0.026 0.974 37 H 0.024 0.976 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -17.418 4.394 -16.681 24.514 hybrid contribution 0.784 0.526 0.688 1.168 sum -16.634 4.921 -15.993 23.594 Atomic orbital electron populations 1.23157 0.78714 1.04385 1.01828 1.88054 1.22261 1.26570 1.94891 1.22468 0.94891 0.87446 0.93083 0.85353 1.30883 1.21774 1.14500 1.03916 1.08934 0.80973 0.74451 0.77935 1.93617 1.86141 1.32293 1.84015 1.93590 1.78135 1.63829 1.60703 1.31286 1.07723 1.15331 1.20302 1.20959 0.92275 0.96426 0.86826 0.86799 1.55435 1.67208 1.34435 1.28196 1.04640 0.77766 0.73029 0.73373 1.93526 1.84473 1.57909 1.62250 1.93531 1.80947 1.40088 1.83875 1.30467 1.19987 1.12713 1.09372 1.18834 0.95926 0.95906 0.91373 1.21571 0.90990 1.46969 0.97921 0.90320 1.26073 1.04680 0.94568 0.94836 1.70102 1.35492 1.47355 1.04469 0.85319 0.78435 0.77730 0.79096 1.17848 1.20498 1.20684 0.88760 0.92686 0.91244 0.81959 0.79319 0.79698 0.82648 0.72697 0.83748 0.82851 0.97376 0.97592 0.92493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 10.73 113.37 1.22 1.38 16 2 O -0.40 -7.02 10.07 -148.98 -1.50 -8.52 16 3 C 0.08 0.99 2.87 30.80 0.09 1.08 16 4 H 0.13 0.81 7.18 -2.39 -0.02 0.79 16 5 C -0.58 -3.96 7.01 72.39 0.51 -3.46 16 6 S 2.39 37.39 6.08 -56.49 -0.34 37.04 16 7 O -0.96 -24.25 18.16 -127.53 -2.32 -26.57 16 8 O -0.97 -20.86 18.17 -127.53 -2.32 -23.17 16 9 C -0.62 -8.39 6.29 72.39 0.46 -7.93 16 10 C 0.14 2.46 3.00 45.20 0.14 2.59 16 11 H 0.11 2.45 7.13 -2.39 -0.02 2.43 16 12 N -1.09 -19.72 5.18 -168.52 -0.87 -20.60 16 13 S 2.62 82.70 5.44 -56.49 -0.31 82.39 16 14 O -0.99 -37.20 18.08 -127.65 -2.31 -39.51 16 15 O -0.99 -39.04 17.36 -127.65 -2.22 -41.25 16 16 C -0.59 -20.10 5.50 71.98 0.40 -19.71 16 17 C 0.02 0.92 4.98 29.85 0.15 1.07 16 18 C -0.54 -28.64 9.11 25.60 0.23 -28.41 16 19 H 0.08 3.84 7.74 -2.91 -0.02 3.82 16 20 C 0.00 -0.18 5.46 84.66 0.46 0.28 16 21 N -0.93 -56.08 13.29 21.45 0.28 -55.80 16 22 Si 0.97 42.73 29.54 68.60 2.03 44.76 16 23 H -0.25 -10.43 7.11 99.48 0.71 -9.73 16 24 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 25 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 26 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.05 0.51 8.07 -2.39 -0.02 0.50 16 28 H 0.07 0.39 7.78 -2.38 -0.02 0.37 16 29 H 0.16 0.73 7.66 -2.38 -0.02 0.71 16 30 H 0.19 -0.20 8.14 -2.39 -0.02 -0.21 16 31 H 0.19 1.31 8.05 -2.39 -0.02 1.29 16 32 H 0.16 2.12 7.07 -2.38 -0.02 2.10 16 33 H 0.43 4.60 8.51 -96.75 -0.82 3.78 16 34 H 0.14 4.14 6.79 -2.39 -0.02 4.13 16 35 H 0.15 4.24 8.14 -2.39 -0.02 4.22 16 36 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 37 H 0.01 0.31 8.14 -2.39 -0.02 0.30 16 38 H 0.27 14.97 8.31 -92.71 -0.77 14.19 16 Total: -1.00 -91.22 342.65 -5.96 -97.18 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: 0.27 Total: 7.15 kcal Atomic # 6 Polarization: -56.74 SS G_CDS: 3.64 Total: -53.10 kcal Atomic # 7 Polarization: -75.80 SS G_CDS: -0.59 Total: -76.39 kcal Atomic # 8 Polarization: -128.37 SS G_CDS: -10.66 Total: -139.03 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Atomic # 16 Polarization: 120.09 SS G_CDS: -0.65 Total: 119.44 kcal Total: -91.22 -5.96 -97.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594825910.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.733 kcal (2) G-P(sol) polarization free energy of solvation -91.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -210.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -216.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds