Wall clock time and date at job start Fri Apr 10 2020 14:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 O 1.42103 * 110.53877 * 2 1 4 4 O 1.42096 * 110.54264 * 136.75254 * 2 1 3 5 5 C 1.76199 * 104.44900 * 248.38127 * 2 1 3 6 6 C 1.38379 * 119.84434 * 269.72890 * 5 2 1 7 7 C 1.37932 * 120.15285 * 179.73031 * 6 5 2 8 8 C 1.39653 * 119.84248 * 0.55942 * 7 6 5 9 9 C 1.47723 * 120.14837 * 179.68892 * 8 7 6 10 10 O 1.21590 * 119.99941 * 142.19051 * 9 8 7 11 11 N 1.34777 * 120.00352 * 322.18742 * 9 8 7 12 12 C 1.36870 * 120.00527 * 186.76221 * 11 9 8 13 13 H 1.07995 * 119.99949 * 136.01038 * 12 11 9 14 14 C 1.39051 * 120.00129 * 316.02248 * 12 11 9 15 15 N 1.31359 * 119.99627 * 338.41038 * 14 12 11 16 16 Si 1.86793 * 120.00141 * 158.41068 * 14 12 11 17 17 H 1.48498 * 109.47091 * 65.00236 * 16 14 12 18 18 H 1.48502 * 109.47088 * 185.00079 * 16 14 12 19 19 H 1.48499 * 109.47159 * 304.99797 * 16 14 12 20 20 C 1.46507 * 119.99453 * 6.76843 * 11 9 8 21 21 C 1.50700 * 109.46872 * 100.68389 * 20 11 9 22 22 O 1.20821 * 120.00484 * 359.97438 * 21 20 11 23 23 O 1.34233 * 119.99686 * 179.97438 * 21 20 11 24 24 C 1.39646 * 119.69984 * 359.70973 * 8 7 6 25 25 C 1.37935 * 119.84671 * 0.02562 * 24 8 7 26 26 H 1.08995 * 109.46947 * 171.62150 * 1 2 3 27 27 H 1.09010 * 109.47062 * 51.62235 * 1 2 3 28 28 H 1.08996 * 109.47104 * 291.62383 * 1 2 3 29 29 H 1.08003 * 119.92484 * 359.97438 * 6 5 2 30 30 H 1.07996 * 120.08176 * 180.25196 * 7 6 5 31 31 H 0.97003 * 120.00193 * 185.05278 * 15 14 12 32 32 H 1.09005 * 109.46448 * 220.68122 * 20 11 9 33 33 H 1.08993 * 109.47418 * 340.68009 * 20 11 9 34 34 H 0.96697 * 117.00338 * 179.97438 * 23 21 20 35 35 H 1.08001 * 120.07463 * 179.97438 * 24 8 7 36 36 H 1.07996 * 119.92527 * 180.02562 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3307 0.0000 4 8 2.3127 -0.9692 0.9117 5 6 2.2537 -0.6286 -1.5862 6 6 2.4310 -1.9896 -1.7627 7 6 2.7698 -2.4892 -3.0029 8 6 2.9452 -1.6168 -4.0792 9 6 3.3148 -2.1438 -5.4088 10 8 2.8418 -1.6469 -6.4127 11 7 4.1762 -3.1755 -5.5093 12 6 4.6260 -3.5744 -6.7388 13 1 5.6720 -3.8010 -6.8837 14 6 3.7364 -3.6877 -7.8015 15 7 2.4517 -3.8342 -7.5697 16 14 4.3681 -3.6316 -9.5585 17 1 5.2340 -4.8112 -9.8111 18 1 3.2187 -3.6509 -10.4986 19 1 5.1536 -2.3880 -9.7626 20 6 4.6310 -3.8701 -4.3021 21 6 3.8604 -5.1552 -4.1416 22 8 3.0175 -5.4595 -4.9520 23 8 4.1105 -5.9619 -3.0983 24 6 2.7702 -0.2440 -3.8928 25 6 2.4260 0.2414 -2.6483 26 1 -0.3633 -1.0167 -0.1497 27 1 -0.3634 0.6381 -0.8057 28 1 -0.3633 0.3787 0.9553 29 1 2.3000 -2.6627 -0.9282 30 1 2.9039 -3.5519 -3.1402 31 1 1.8401 -3.9866 -8.3071 32 1 5.6944 -4.0926 -4.3900 33 1 4.4633 -3.2349 -3.4325 34 1 3.5907 -6.7750 -3.0375 35 1 2.9047 0.4362 -4.7208 36 1 2.2899 1.3028 -2.5028 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000738175825.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:49:48 Heat of formation + Delta-G solvation = -120.428681 kcal Electronic energy + Delta-G solvation = -26093.446751 eV Core-core repulsion = 22058.334857 eV Total energy + Delta-G solvation = -4035.111894 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.070 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -40.20317 -39.04785 -37.58291 -37.16797 -36.00512 -35.48052 -34.32599 -32.45632 -30.93690 -30.85332 -29.66276 -27.77202 -25.42989 -23.27042 -22.65337 -21.38072 -19.77142 -19.12197 -17.83793 -17.46690 -17.26669 -16.37690 -16.28389 -16.01452 -15.77705 -15.48303 -14.84005 -14.70706 -14.28902 -14.08459 -13.73681 -13.44038 -13.38996 -13.36760 -13.11425 -12.68366 -12.33267 -12.17247 -12.13282 -12.05702 -11.77307 -11.36693 -11.20074 -10.96643 -10.91250 -10.84249 -10.75769 -10.63296 -10.33342 -9.83014 -9.08616 -8.95836 -8.86265 -8.39763 -7.42759 -6.21893 -4.00713 -0.03266 0.78323 1.44582 2.79230 2.88841 3.19451 3.26285 3.32260 3.34474 3.56803 3.87853 4.02570 4.13084 4.37247 4.56658 4.62398 4.71010 4.97212 4.99251 5.12486 5.38955 5.41959 5.43118 5.55981 5.58256 5.80033 5.88888 5.96442 6.07271 6.17539 6.30659 6.60099 6.94201 7.06463 7.45233 8.02743 8.56740 8.76131 8.87010 9.37638 9.93145 10.82680 Molecular weight = 327.07amu Principal moments of inertia in cm(-1) A = 0.019247 B = 0.003956 C = 0.003497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.440293 B = 7076.369583 C = 8004.500362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.652 4.652 2 S 2.505 3.495 3 O -0.942 6.942 4 O -0.941 6.941 5 C -0.668 4.668 6 C -0.027 4.027 7 C -0.139 4.139 8 C -0.035 4.035 9 C 0.497 3.503 10 O -0.511 6.511 11 N -0.416 5.416 12 C -0.360 4.360 13 H 0.087 0.913 14 C 0.079 3.921 15 N -0.789 5.789 16 Si 0.915 3.085 17 H -0.278 1.278 18 H -0.285 1.285 19 H -0.271 1.271 20 C 0.090 3.910 21 C 0.434 3.566 22 O -0.455 6.455 23 O -0.535 6.535 24 C -0.103 4.103 25 C -0.027 4.027 26 H 0.132 0.868 27 H 0.132 0.868 28 H 0.128 0.872 29 H 0.141 0.859 30 H 0.133 0.867 31 H 0.266 0.734 32 H 0.102 0.898 33 H 0.114 0.886 34 H 0.397 0.603 35 H 0.139 0.861 36 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.515 3.429 14.143 14.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.801 4.801 2 S 2.685 3.315 3 O -0.939 6.939 4 O -0.938 6.938 5 C -0.756 4.756 6 C -0.046 4.046 7 C -0.159 4.159 8 C -0.039 4.039 9 C 0.285 3.715 10 O -0.388 6.388 11 N -0.137 5.137 12 C -0.486 4.486 13 H 0.104 0.896 14 C -0.136 4.136 15 N -0.418 5.418 16 Si 0.742 3.258 17 H -0.203 1.203 18 H -0.210 1.210 19 H -0.196 1.196 20 C -0.036 4.036 21 C 0.271 3.729 22 O -0.337 6.337 23 O -0.348 6.348 24 C -0.123 4.123 25 C -0.046 4.046 26 H 0.150 0.850 27 H 0.150 0.850 28 H 0.147 0.853 29 H 0.159 0.841 30 H 0.151 0.849 31 H 0.077 0.923 32 H 0.120 0.880 33 H 0.131 0.869 34 H 0.255 0.745 35 H 0.157 0.843 36 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -2.443 4.253 13.860 14.703 hybrid contribution -0.700 -1.216 -1.551 2.092 sum -3.143 3.037 12.309 13.062 Atomic orbital electron populations 1.30237 1.26176 1.12158 1.11545 1.04919 0.77640 0.74512 0.74388 1.93572 1.77303 1.36719 1.86303 1.93572 1.77285 1.61639 1.61341 1.30341 1.20703 1.02943 1.21648 1.20800 0.93170 0.93126 0.97484 1.21778 1.01190 1.00327 0.92576 1.21011 0.93237 0.94420 0.95269 1.17841 0.84427 0.82231 0.86971 1.90667 1.51550 1.59874 1.36699 1.42959 1.42164 1.24270 1.04259 1.19004 0.93597 1.51730 0.84305 0.89553 1.25320 0.94698 0.93685 0.99919 1.69909 1.02942 1.36219 1.32740 0.86236 0.78360 0.78678 0.82570 1.20338 1.21010 1.19574 1.21796 0.99210 0.89168 0.93444 1.24690 0.83203 0.86554 0.78404 1.90884 1.30321 1.72158 1.40342 1.84597 1.65145 1.35891 1.49147 1.21301 0.99168 0.94525 0.97317 1.20817 0.93349 0.99122 0.91342 0.84969 0.84957 0.85322 0.84140 0.84903 0.92335 0.88006 0.86872 0.74544 0.84329 0.84100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -3.96 10.80 101.05 1.09 -2.87 16 2 S 2.51 25.38 5.80 -107.50 -0.62 24.76 16 3 O -0.94 -12.17 17.11 -57.54 -0.98 -13.16 16 4 O -0.94 -12.17 17.10 -57.54 -0.98 -13.16 16 5 C -0.67 -8.60 5.67 -39.48 -0.22 -8.82 16 6 C -0.03 -0.37 9.45 -39.64 -0.37 -0.75 16 7 C -0.14 -2.38 7.36 -39.17 -0.29 -2.66 16 8 C -0.04 -0.69 5.39 -104.97 -0.57 -1.26 16 9 C 0.50 12.30 6.82 -12.38 -0.08 12.22 16 10 O -0.51 -14.62 14.39 5.29 0.08 -14.54 16 11 N -0.42 -10.04 2.12 -117.21 -0.25 -10.29 16 12 C -0.36 -9.55 8.83 -15.00 -0.13 -9.68 16 13 H 0.09 2.16 7.92 -52.49 -0.42 1.74 16 14 C 0.08 2.19 4.28 -17.45 -0.07 2.11 16 15 N -0.79 -23.13 11.74 55.50 0.65 -22.48 16 16 Si 0.92 21.36 29.61 -169.99 -5.03 16.33 16 17 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 19 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 20 C 0.09 1.70 5.47 -5.19 -0.03 1.67 16 21 C 0.43 8.34 6.35 36.01 0.23 8.57 16 22 O -0.46 -10.97 16.89 -18.75 -0.32 -11.29 16 23 O -0.54 -7.73 13.42 -39.27 -0.53 -8.26 16 24 C -0.10 -1.75 9.63 -39.17 -0.38 -2.13 16 25 C -0.03 -0.37 9.45 -39.64 -0.37 -0.75 16 26 H 0.13 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.13 0.66 8.14 -51.92 -0.42 0.24 16 28 H 0.13 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.14 1.60 7.55 -52.48 -0.40 1.20 16 30 H 0.13 2.31 4.03 -52.49 -0.21 2.10 16 31 H 0.27 7.52 8.32 -40.82 -0.34 7.18 16 32 H 0.10 1.70 8.12 -51.93 -0.42 1.28 16 33 H 0.11 1.88 4.32 -51.93 -0.22 1.66 16 34 H 0.40 4.12 9.10 45.56 0.41 4.54 16 35 H 0.14 2.30 8.04 -52.49 -0.42 1.88 16 36 H 0.14 1.55 7.56 -52.49 -0.40 1.15 16 LS Contribution 328.35 15.07 4.95 4.95 Total: -1.00 -39.40 328.35 -6.72 -46.12 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -2.48 Total: 5.37 kcal Atomic # 6 Polarization: -3.14 SS G_CDS: -1.20 Total: -4.34 kcal Atomic # 7 Polarization: -33.18 SS G_CDS: 0.40 Total: -32.77 kcal Atomic # 8 Polarization: -57.67 SS G_CDS: -2.74 Total: -60.41 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.03 Total: 16.33 kcal Atomic # 16 Polarization: 25.38 SS G_CDS: -0.62 Total: 24.76 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -39.40 -6.72 -46.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738175825.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.308 kcal (2) G-P(sol) polarization free energy of solvation -39.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds