Wall clock time and date at job start Fri Apr 10 2020 14:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 O 1.42103 * 110.53877 * 2 1 4 4 O 1.42096 * 110.54264 * 136.75254 * 2 1 3 5 5 C 1.76199 * 104.44900 * 248.38127 * 2 1 3 6 6 C 1.38379 * 119.84434 * 269.72890 * 5 2 1 7 7 C 1.37932 * 120.15285 * 179.73031 * 6 5 2 8 8 C 1.39653 * 119.84248 * 0.55942 * 7 6 5 9 9 C 1.47723 * 120.14837 * 179.68892 * 8 7 6 10 10 O 1.21590 * 119.99941 * 142.19051 * 9 8 7 11 11 N 1.34777 * 120.00352 * 322.18742 * 9 8 7 12 12 C 1.36870 * 120.00527 * 186.76221 * 11 9 8 13 13 H 1.07995 * 119.99949 * 136.01038 * 12 11 9 14 14 C 1.39051 * 120.00129 * 316.02248 * 12 11 9 15 15 N 1.31359 * 119.99627 * 338.41038 * 14 12 11 16 16 Si 1.86793 * 120.00141 * 158.41068 * 14 12 11 17 17 H 1.48498 * 109.47091 * 65.00236 * 16 14 12 18 18 H 1.48502 * 109.47088 * 185.00079 * 16 14 12 19 19 H 1.48499 * 109.47159 * 304.99797 * 16 14 12 20 20 C 1.46507 * 119.99453 * 6.76843 * 11 9 8 21 21 C 1.50700 * 109.46872 * 100.68389 * 20 11 9 22 22 O 1.20821 * 120.00484 * 359.97438 * 21 20 11 23 23 O 1.34233 * 119.99686 * 179.97438 * 21 20 11 24 24 C 1.39646 * 119.69984 * 359.70973 * 8 7 6 25 25 C 1.37935 * 119.84671 * 0.02562 * 24 8 7 26 26 H 1.08995 * 109.46947 * 171.62150 * 1 2 3 27 27 H 1.09010 * 109.47062 * 51.62235 * 1 2 3 28 28 H 1.08996 * 109.47104 * 291.62383 * 1 2 3 29 29 H 1.08003 * 119.92484 * 359.97438 * 6 5 2 30 30 H 1.07996 * 120.08176 * 180.25196 * 7 6 5 31 31 H 0.97003 * 120.00193 * 185.05278 * 15 14 12 32 32 H 1.09005 * 109.46448 * 220.68122 * 20 11 9 33 33 H 1.08993 * 109.47418 * 340.68009 * 20 11 9 34 34 H 0.96697 * 117.00338 * 179.97438 * 23 21 20 35 35 H 1.08001 * 120.07463 * 179.97438 * 24 8 7 36 36 H 1.07996 * 119.92527 * 180.02562 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3307 0.0000 4 8 2.3127 -0.9692 0.9117 5 6 2.2537 -0.6286 -1.5862 6 6 2.4310 -1.9896 -1.7627 7 6 2.7698 -2.4892 -3.0029 8 6 2.9452 -1.6168 -4.0792 9 6 3.3148 -2.1438 -5.4088 10 8 2.8418 -1.6469 -6.4127 11 7 4.1762 -3.1755 -5.5093 12 6 4.6260 -3.5744 -6.7388 13 1 5.6720 -3.8010 -6.8837 14 6 3.7364 -3.6877 -7.8015 15 7 2.4517 -3.8342 -7.5697 16 14 4.3681 -3.6316 -9.5585 17 1 5.2340 -4.8112 -9.8111 18 1 3.2187 -3.6509 -10.4986 19 1 5.1536 -2.3880 -9.7626 20 6 4.6310 -3.8701 -4.3021 21 6 3.8604 -5.1552 -4.1416 22 8 3.0175 -5.4595 -4.9520 23 8 4.1105 -5.9619 -3.0983 24 6 2.7702 -0.2440 -3.8928 25 6 2.4260 0.2414 -2.6483 26 1 -0.3633 -1.0167 -0.1497 27 1 -0.3634 0.6381 -0.8057 28 1 -0.3633 0.3787 0.9553 29 1 2.3000 -2.6627 -0.9282 30 1 2.9039 -3.5519 -3.1402 31 1 1.8401 -3.9866 -8.3071 32 1 5.6944 -4.0926 -4.3900 33 1 4.4633 -3.2349 -3.4325 34 1 3.5907 -6.7750 -3.0375 35 1 2.9047 0.4362 -4.7208 36 1 2.2899 1.3028 -2.5028 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000738175825.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:49:47 Heat of formation + Delta-G solvation = -152.504776 kcal Electronic energy + Delta-G solvation = -26094.837675 eV Core-core repulsion = 22058.334857 eV Total energy + Delta-G solvation = -4036.502818 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.070 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.74931 -40.50561 -39.15587 -38.07621 -36.98226 -36.91384 -36.14880 -34.26475 -32.32579 -32.17882 -30.19996 -29.42382 -27.19449 -24.77121 -23.91315 -22.88355 -21.41666 -20.05910 -19.20593 -18.94001 -18.65117 -18.02053 -17.35528 -17.13953 -17.03919 -16.83746 -16.55930 -16.14325 -15.74066 -15.54397 -15.19124 -14.85123 -14.53335 -14.11170 -13.99884 -13.87753 -13.81295 -13.71888 -13.32417 -13.07452 -13.05793 -12.94250 -12.76059 -12.75182 -12.32844 -12.23690 -12.16081 -12.06490 -11.66800 -11.47672 -10.88790 -10.53661 -10.19427 -10.06678 -9.35726 -8.22411 -6.05297 -0.83253 -0.45262 0.20728 1.35741 1.36933 1.44513 1.48605 1.75255 1.95165 2.26732 2.30500 2.68710 2.88921 3.08086 3.22081 3.25069 3.69214 3.80908 3.83942 4.10699 4.18521 4.19679 4.23061 4.41259 4.46779 4.52497 4.61817 4.87452 4.94937 5.00346 5.04442 5.29017 5.42971 5.70745 5.76648 6.07214 6.85074 6.96836 7.20305 7.45984 8.06838 8.82957 Molecular weight = 327.07amu Principal moments of inertia in cm(-1) A = 0.019247 B = 0.003956 C = 0.003497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.440293 B = 7076.369583 C = 8004.500362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.627 4.627 2 S 2.521 3.479 3 O -0.969 6.969 4 O -0.968 6.968 5 C -0.656 4.656 6 C -0.021 4.021 7 C -0.144 4.144 8 C -0.069 4.069 9 C 0.489 3.511 10 O -0.566 6.566 11 N -0.432 5.432 12 C -0.381 4.381 13 H 0.093 0.907 14 C 0.030 3.970 15 N -0.835 5.835 16 Si 0.972 3.028 17 H -0.259 1.259 18 H -0.290 1.290 19 H -0.272 1.272 20 C 0.084 3.916 21 C 0.448 3.552 22 O -0.511 6.511 23 O -0.512 6.512 24 C -0.112 4.112 25 C -0.019 4.019 26 H 0.151 0.849 27 H 0.151 0.849 28 H 0.158 0.842 29 H 0.173 0.827 30 H 0.127 0.873 31 H 0.257 0.743 32 H 0.125 0.875 33 H 0.139 0.861 34 H 0.420 0.580 35 H 0.131 0.869 36 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.038 4.046 17.555 18.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.781 4.781 2 S 2.702 3.298 3 O -0.967 6.967 4 O -0.965 6.965 5 C -0.741 4.741 6 C -0.040 4.040 7 C -0.163 4.163 8 C -0.073 4.073 9 C 0.279 3.721 10 O -0.447 6.447 11 N -0.152 5.152 12 C -0.508 4.508 13 H 0.111 0.889 14 C -0.180 4.180 15 N -0.466 5.466 16 Si 0.797 3.203 17 H -0.183 1.183 18 H -0.216 1.216 19 H -0.197 1.197 20 C -0.040 4.040 21 C 0.288 3.712 22 O -0.397 6.397 23 O -0.326 6.326 24 C -0.132 4.132 25 C -0.038 4.038 26 H 0.169 0.831 27 H 0.169 0.831 28 H 0.176 0.824 29 H 0.190 0.810 30 H 0.145 0.855 31 H 0.066 0.934 32 H 0.143 0.857 33 H 0.156 0.844 34 H 0.281 0.719 35 H 0.149 0.851 36 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -2.859 4.815 17.298 18.182 hybrid contribution -0.596 -1.308 -2.231 2.654 sum -3.456 3.507 15.067 15.851 Atomic orbital electron populations 1.30061 1.19673 1.14245 1.14150 1.04654 0.79778 0.73028 0.72318 1.93542 1.79638 1.37578 1.85922 1.93541 1.79607 1.62236 1.61137 1.31029 1.17685 1.02403 1.22933 1.21134 0.91703 0.94239 0.96890 1.21731 1.01784 0.99694 0.93097 1.20682 0.97118 0.95939 0.93538 1.18644 0.83262 0.81732 0.88428 1.90602 1.53487 1.61448 1.39161 1.43057 1.42037 1.24969 1.05122 1.19303 0.93905 1.51766 0.85821 0.88899 1.26156 0.94830 0.93381 1.03650 1.70061 1.04179 1.39523 1.32885 0.85353 0.77695 0.79042 0.78247 1.18344 1.21581 1.19712 1.21969 1.00156 0.89494 0.92407 1.24472 0.81857 0.86661 0.78180 1.90889 1.32751 1.73455 1.42629 1.84508 1.64891 1.36531 1.46637 1.21377 0.99600 0.93427 0.98779 1.21138 0.91742 1.00899 0.90010 0.83101 0.83071 0.82359 0.81003 0.85525 0.93387 0.85710 0.84377 0.71908 0.85109 0.81004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.63 -3.88 10.80 113.37 1.22 -2.65 16 2 S 2.52 40.70 5.80 -56.49 -0.33 40.37 16 3 O -0.97 -21.67 17.11 -127.65 -2.18 -23.86 16 4 O -0.97 -21.41 17.10 -127.65 -2.18 -23.59 16 5 C -0.66 -14.75 5.67 22.34 0.13 -14.63 16 6 C -0.02 -0.53 9.45 22.23 0.21 -0.32 16 7 C -0.14 -4.78 7.36 22.54 0.17 -4.61 16 8 C -0.07 -2.78 5.39 -20.09 -0.11 -2.88 16 9 C 0.49 25.43 6.82 86.75 0.59 26.02 16 10 O -0.57 -34.49 14.39 -4.00 -0.06 -34.54 16 11 N -0.43 -21.61 2.12 -643.00 -1.36 -22.97 16 12 C -0.38 -20.99 8.83 84.10 0.74 -20.25 16 13 H 0.09 4.78 7.92 -2.91 -0.02 4.75 16 14 C 0.03 1.74 4.28 84.96 0.36 2.10 16 15 N -0.83 -51.89 11.74 21.68 0.25 -51.63 16 16 Si 0.97 45.73 29.61 68.60 2.03 47.76 16 17 H -0.26 -11.21 7.11 99.48 0.71 -10.51 16 18 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 19 H -0.27 -12.63 7.11 99.48 0.71 -11.93 16 20 C 0.08 3.20 5.47 85.63 0.47 3.67 16 21 C 0.45 17.12 6.35 71.24 0.45 17.57 16 22 O -0.51 -25.32 16.89 21.98 0.37 -24.95 16 23 O -0.51 -13.71 13.42 -51.45 -0.69 -14.40 16 24 C -0.11 -3.81 9.63 22.54 0.22 -3.59 16 25 C -0.02 -0.49 9.45 22.23 0.21 -0.28 16 26 H 0.15 0.58 8.14 -2.39 -0.02 0.56 16 27 H 0.15 0.57 8.14 -2.38 -0.02 0.55 16 28 H 0.16 0.27 8.14 -2.39 -0.02 0.25 16 29 H 0.17 3.20 7.55 -2.91 -0.02 3.18 16 30 H 0.13 4.32 4.03 -2.91 -0.01 4.31 16 31 H 0.26 15.50 8.32 -92.71 -0.77 14.73 16 32 H 0.13 4.08 8.12 -2.38 -0.02 4.06 16 33 H 0.14 4.50 4.32 -2.39 -0.01 4.49 16 34 H 0.42 7.72 9.10 -74.06 -0.67 7.04 16 35 H 0.13 4.53 8.04 -2.91 -0.02 4.51 16 36 H 0.17 3.23 7.56 -2.91 -0.02 3.21 16 Total: -1.00 -92.42 328.35 1.00 -91.42 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: 0.49 Total: 16.24 kcal Atomic # 6 Polarization: -4.51 SS G_CDS: 4.66 Total: 0.15 kcal Atomic # 7 Polarization: -73.50 SS G_CDS: -1.11 Total: -74.61 kcal Atomic # 8 Polarization: -116.59 SS G_CDS: -4.74 Total: -121.34 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Atomic # 16 Polarization: 40.70 SS G_CDS: -0.33 Total: 40.37 kcal Total: -92.42 1.00 -91.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738175825.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.085 kcal (2) G-P(sol) polarization free energy of solvation -92.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds