Wall clock time and date at job start Fri Apr 10 2020 14:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99519 * 2 1 4 4 H 1.48503 * 109.47029 * 240.00061 * 3 2 1 5 5 H 1.48498 * 109.47585 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47266 * 120.00415 * 3 2 1 7 7 C 1.37872 * 120.00411 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00086 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99831 * 359.97438 * 7 2 1 10 10 N 1.46504 * 109.47015 * 180.02562 * 9 7 2 11 11 C 1.34774 * 119.99775 * 179.97438 * 10 9 7 12 12 O 1.21285 * 120.00048 * 0.02562 * 11 10 9 13 13 C 1.50694 * 119.99979 * 179.97438 * 11 10 9 14 14 O 1.45199 * 109.47502 * 180.02562 * 13 11 10 15 15 C 1.34228 * 117.00583 * 180.02562 * 14 13 11 16 16 O 1.20836 * 119.99625 * 0.02562 * 15 14 13 17 17 C 1.50696 * 120.00633 * 179.97438 * 15 14 13 18 18 H 1.08999 * 109.47082 * 305.00485 * 17 15 14 19 19 O 1.42895 * 109.47402 * 184.99783 * 17 15 14 20 20 C 1.50707 * 109.46572 * 64.99942 * 17 15 14 21 21 C 1.38237 * 120.00392 * 95.23700 * 20 17 15 22 22 C 1.38219 * 120.01452 * 180.25422 * 21 20 17 23 23 C 1.38267 * 120.02305 * 359.74114 * 22 21 20 24 24 C 1.38195 * 120.01443 * 0.02562 * 23 22 21 25 25 C 1.38325 * 120.00626 * 274.99773 * 20 17 15 26 26 Cl 1.73599 * 120.01741 * 0.03066 * 25 20 17 27 27 H 0.97002 * 120.00204 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.47419 * 60.00248 * 9 7 2 29 29 H 1.09001 * 109.46880 * 299.99865 * 9 7 2 30 30 H 0.96996 * 120.00146 * 359.97438 * 10 9 7 31 31 H 1.09006 * 109.47010 * 59.99955 * 13 11 10 32 32 H 1.09002 * 109.47349 * 300.00396 * 13 11 10 33 33 H 0.96696 * 114.00341 * 300.00464 * 19 17 15 34 34 H 1.08000 * 119.99782 * 359.97136 * 21 20 17 35 35 H 1.08001 * 119.99260 * 179.72556 * 22 21 20 36 36 H 1.08003 * 119.99358 * 180.02562 * 23 22 21 37 37 H 1.08001 * 120.00765 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 7 2.2033 -3.6126 -0.0005 11 6 1.7540 -4.8833 0.0000 12 8 0.5616 -5.1049 0.0000 13 6 2.7333 -6.0286 -0.0006 14 8 2.0074 -7.2862 -0.0005 15 6 2.7385 -8.4119 -0.0004 16 8 3.9452 -8.3486 0.0000 17 6 2.0545 -9.7547 0.0003 18 1 1.3646 -9.8106 0.8423 19 8 3.0342 -10.7883 0.1176 20 6 1.2909 -9.9300 -1.2871 21 6 1.8701 -10.5998 -2.3487 22 6 1.1720 -10.7562 -3.5313 23 6 -0.1081 -10.2475 -3.6515 24 6 -0.6900 -9.5819 -2.5893 25 6 0.0085 -9.4251 -1.4051 26 17 -0.7216 -8.5887 -0.0706 27 1 -0.4850 0.8400 -0.0004 28 1 0.6242 -2.5567 -0.8903 29 1 0.6249 -2.5570 0.8897 30 1 3.1569 -3.4353 -0.0009 31 1 3.3607 -5.9707 0.8890 32 1 3.3594 -5.9710 -0.8910 33 1 3.6827 -10.7988 -0.5996 34 1 2.8701 -10.9970 -2.2556 35 1 1.6266 -11.2756 -4.3619 36 1 -0.6533 -10.3703 -4.5757 37 1 -1.6897 -9.1843 -2.6835 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000768605027.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:50:39 Heat of formation + Delta-G solvation = -149.448599 kcal Electronic energy + Delta-G solvation = -24824.890522 eV Core-core repulsion = 20786.476524 eV Total energy + Delta-G solvation = -4038.413998 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.075 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.09104 -39.70382 -38.72153 -37.34391 -36.50818 -36.14810 -34.24008 -32.42346 -32.20259 -31.10250 -29.45727 -27.72072 -26.41565 -23.04976 -22.97592 -22.41186 -21.17134 -19.94120 -18.62191 -18.23293 -17.61568 -16.87424 -16.79532 -16.09575 -16.07129 -15.55500 -15.17063 -14.91846 -14.71630 -14.30315 -14.23501 -14.06847 -13.71580 -13.30436 -13.00410 -12.71827 -12.45135 -12.24356 -11.99512 -11.77367 -11.75362 -11.60346 -11.54661 -11.04550 -10.92189 -10.90944 -10.74327 -10.50749 -10.35428 -9.46470 -9.33214 -9.15165 -8.96549 -8.78370 -7.98482 -6.20440 -4.27981 0.68944 0.85961 1.87139 2.03162 2.26185 3.18582 3.20835 3.23318 3.28311 3.29668 3.76496 3.86622 4.03506 4.31394 4.34464 4.52970 4.64487 4.73163 4.92866 5.08445 5.11474 5.15473 5.20756 5.20951 5.33311 5.43631 5.83286 5.85125 6.01024 6.18285 6.37161 6.87966 7.21683 7.30364 7.45298 7.47999 7.60995 7.91282 8.49809 8.70586 8.96397 9.38452 10.89603 Molecular weight = 327.08amu Principal moments of inertia in cm(-1) A = 0.018631 B = 0.002774 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.477045 B =10090.134925 C =10695.719357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.065 3.935 3 Si 0.905 3.095 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.546 4.546 8 H 0.063 0.937 9 C 0.253 3.747 10 N -0.708 5.708 11 C 0.499 3.501 12 O -0.526 6.526 13 C 0.046 3.954 14 O -0.312 6.312 15 C 0.438 3.562 16 O -0.501 6.501 17 C 0.165 3.835 18 H 0.151 0.849 19 O -0.520 6.520 20 C -0.125 4.125 21 C -0.094 4.094 22 C -0.117 4.117 23 C -0.098 4.098 24 C -0.109 4.109 25 C -0.011 4.011 26 Cl -0.032 7.032 27 H 0.267 0.733 28 H 0.029 0.971 29 H 0.029 0.971 30 H 0.392 0.608 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.384 0.616 34 H 0.132 0.868 35 H 0.132 0.868 36 H 0.135 0.865 37 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.307 -23.565 -5.591 24.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.139 4.139 3 Si 0.732 3.268 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.584 4.584 8 H 0.081 0.919 9 C 0.133 3.867 10 N -0.358 5.358 11 C 0.281 3.719 12 O -0.402 6.402 13 C -0.032 4.032 14 O -0.226 6.226 15 C 0.279 3.721 16 O -0.389 6.389 17 C 0.104 3.896 18 H 0.168 0.832 19 O -0.326 6.326 20 C -0.126 4.126 21 C -0.112 4.112 22 C -0.136 4.136 23 C -0.116 4.116 24 C -0.127 4.127 25 C -0.038 4.038 26 Cl -0.002 7.002 27 H 0.077 0.923 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.225 0.775 31 H 0.115 0.885 32 H 0.113 0.887 33 H 0.235 0.765 34 H 0.150 0.850 35 H 0.150 0.850 36 H 0.152 0.848 37 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 2.210 -23.567 -4.927 24.178 hybrid contribution 1.346 1.400 -0.417 1.986 sum 3.556 -22.167 -5.345 23.078 Atomic orbital electron populations 1.69962 1.06112 1.27520 1.48604 1.24945 0.94927 0.99463 0.94603 0.86457 0.79408 0.82214 0.78729 1.20036 1.21034 1.20028 1.21173 0.93285 0.90352 1.53624 0.91856 1.19149 0.88114 0.81480 0.97966 1.46361 1.11452 1.05357 1.72651 1.19828 0.89171 0.83876 0.78980 1.90725 1.16018 1.84416 1.49087 1.22930 0.94589 0.81178 1.04484 1.86643 1.39760 1.13642 1.82552 1.24465 0.87025 0.87714 0.72864 1.90687 1.15167 1.87694 1.45368 1.20248 0.89325 0.82060 0.97962 0.83189 1.86715 1.43433 1.49414 1.53069 1.19891 0.94195 1.02175 0.96329 1.20842 1.00132 0.98022 0.92217 1.21184 0.94874 1.00010 0.97485 1.21245 0.95297 0.96548 0.98486 1.21165 1.00904 0.99271 0.91388 1.20864 0.93430 0.97727 0.91748 1.98463 1.82088 1.75337 1.44353 0.92314 0.95301 0.95306 0.77534 0.88496 0.88663 0.76538 0.85017 0.84993 0.84760 0.84266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.79 13.29 55.43 0.74 -25.05 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 20.64 29.54 -169.99 -5.02 15.62 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.55 -14.58 9.28 -34.44 -0.32 -14.90 16 8 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 9 C 0.25 6.57 5.43 -5.19 -0.03 6.55 16 10 N -0.71 -14.51 5.55 -61.47 -0.34 -14.85 16 11 C 0.50 9.83 7.91 -10.99 -0.09 9.74 16 12 O -0.53 -12.41 16.50 -14.11 -0.23 -12.64 16 13 C 0.05 0.69 5.94 36.00 0.21 0.91 16 14 O -0.31 -4.83 8.49 -45.90 -0.39 -5.22 16 15 C 0.44 5.94 7.26 36.00 0.26 6.20 16 16 O -0.50 -7.43 16.07 -25.47 -0.41 -7.84 16 17 C 0.17 1.82 3.25 -29.03 -0.09 1.72 16 18 H 0.15 1.60 7.13 -51.93 -0.37 1.23 16 19 O -0.52 -5.12 12.64 -55.14 -0.70 -5.81 16 20 C -0.12 -1.31 5.04 -104.59 -0.53 -1.83 16 21 C -0.09 -0.78 9.30 -39.59 -0.37 -1.14 16 22 C -0.12 -0.86 10.05 -39.58 -0.40 -1.25 16 23 C -0.10 -0.76 10.05 -39.59 -0.40 -1.16 16 24 C -0.11 -1.06 9.83 -39.54 -0.39 -1.45 16 25 C -0.01 -0.12 6.31 -39.50 -0.25 -0.37 16 26 Cl -0.03 -0.43 26.16 -51.86 -1.36 -1.78 16 27 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 28 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.39 6.79 8.32 -40.82 -0.34 6.45 16 31 H 0.10 1.29 8.13 -51.93 -0.42 0.87 16 32 H 0.10 1.26 8.13 -51.93 -0.42 0.84 16 33 H 0.38 2.66 7.07 45.56 0.32 2.98 16 34 H 0.13 0.75 6.40 -52.49 -0.34 0.41 16 35 H 0.13 0.62 8.06 -52.49 -0.42 0.19 16 36 H 0.13 0.70 8.06 -52.48 -0.42 0.28 16 37 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 346.23 15.07 5.22 5.22 Total: -1.00 -34.04 346.23 -8.19 -42.23 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -3.22 Total: 5.45 kcal Atomic # 6 Polarization: 7.16 SS G_CDS: -2.48 Total: 4.68 kcal Atomic # 7 Polarization: -40.30 SS G_CDS: 0.40 Total: -39.90 kcal Atomic # 8 Polarization: -29.78 SS G_CDS: -1.73 Total: -31.51 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Atomic # 17 Polarization: -0.43 SS G_CDS: -1.36 Total: -1.78 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -34.04 -8.19 -42.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000768605027.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.216 kcal (2) G-P(sol) polarization free energy of solvation -34.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds