Wall clock time and date at job start Fri Apr 10 2020 14:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99519 * 2 1 4 4 H 1.48503 * 109.47029 * 240.00061 * 3 2 1 5 5 H 1.48498 * 109.47585 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47266 * 120.00415 * 3 2 1 7 7 C 1.37872 * 120.00411 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00086 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99831 * 359.97438 * 7 2 1 10 10 N 1.46504 * 109.47015 * 180.02562 * 9 7 2 11 11 C 1.34774 * 119.99775 * 179.97438 * 10 9 7 12 12 O 1.21285 * 120.00048 * 0.02562 * 11 10 9 13 13 C 1.50694 * 119.99979 * 179.97438 * 11 10 9 14 14 O 1.45199 * 109.47502 * 180.02562 * 13 11 10 15 15 C 1.34228 * 117.00583 * 180.02562 * 14 13 11 16 16 O 1.20836 * 119.99625 * 0.02562 * 15 14 13 17 17 C 1.50696 * 120.00633 * 179.97438 * 15 14 13 18 18 H 1.08999 * 109.47082 * 305.00485 * 17 15 14 19 19 O 1.42895 * 109.47402 * 184.99783 * 17 15 14 20 20 C 1.50707 * 109.46572 * 64.99942 * 17 15 14 21 21 C 1.38237 * 120.00392 * 95.23700 * 20 17 15 22 22 C 1.38219 * 120.01452 * 180.25422 * 21 20 17 23 23 C 1.38267 * 120.02305 * 359.74114 * 22 21 20 24 24 C 1.38195 * 120.01443 * 0.02562 * 23 22 21 25 25 C 1.38325 * 120.00626 * 274.99773 * 20 17 15 26 26 Cl 1.73599 * 120.01741 * 0.03066 * 25 20 17 27 27 H 0.97002 * 120.00204 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.47419 * 60.00248 * 9 7 2 29 29 H 1.09001 * 109.46880 * 299.99865 * 9 7 2 30 30 H 0.96996 * 120.00146 * 359.97438 * 10 9 7 31 31 H 1.09006 * 109.47010 * 59.99955 * 13 11 10 32 32 H 1.09002 * 109.47349 * 300.00396 * 13 11 10 33 33 H 0.96696 * 114.00341 * 300.00464 * 19 17 15 34 34 H 1.08000 * 119.99782 * 359.97136 * 21 20 17 35 35 H 1.08001 * 119.99260 * 179.72556 * 22 21 20 36 36 H 1.08003 * 119.99358 * 180.02562 * 23 22 21 37 37 H 1.08001 * 120.00765 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 7 2.2033 -3.6126 -0.0005 11 6 1.7540 -4.8833 0.0000 12 8 0.5616 -5.1049 0.0000 13 6 2.7333 -6.0286 -0.0006 14 8 2.0074 -7.2862 -0.0005 15 6 2.7385 -8.4119 -0.0004 16 8 3.9452 -8.3486 0.0000 17 6 2.0545 -9.7547 0.0003 18 1 1.3646 -9.8106 0.8423 19 8 3.0342 -10.7883 0.1176 20 6 1.2909 -9.9300 -1.2871 21 6 1.8701 -10.5998 -2.3487 22 6 1.1720 -10.7562 -3.5313 23 6 -0.1081 -10.2475 -3.6515 24 6 -0.6900 -9.5819 -2.5893 25 6 0.0085 -9.4251 -1.4051 26 17 -0.7216 -8.5887 -0.0706 27 1 -0.4850 0.8400 -0.0004 28 1 0.6242 -2.5567 -0.8903 29 1 0.6249 -2.5570 0.8897 30 1 3.1569 -3.4353 -0.0009 31 1 3.3607 -5.9707 0.8890 32 1 3.3594 -5.9710 -0.8910 33 1 3.6827 -10.7988 -0.5996 34 1 2.8701 -10.9970 -2.2556 35 1 1.6266 -11.2756 -4.3619 36 1 -0.6533 -10.3703 -4.5757 37 1 -1.6897 -9.1843 -2.6835 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000768605027.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:50:38 Heat of formation + Delta-G solvation = -172.834604 kcal Electronic energy + Delta-G solvation = -24825.904616 eV Core-core repulsion = 20786.476524 eV Total energy + Delta-G solvation = -4039.428092 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.075 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.12004 -40.69678 -40.14349 -38.30984 -37.39411 -37.19286 -36.15475 -34.40552 -32.95906 -31.76848 -30.90111 -29.03835 -27.86355 -24.69702 -23.72119 -23.49857 -22.12857 -21.62183 -19.65818 -19.13310 -19.05669 -18.20969 -17.85524 -17.36831 -17.09660 -16.89963 -16.76023 -16.14820 -16.02319 -15.57965 -15.06249 -14.87469 -14.77875 -14.52562 -14.39442 -14.13804 -13.88397 -13.65261 -13.37892 -12.96287 -12.94912 -12.68871 -12.54293 -12.43322 -12.30331 -12.24665 -11.95132 -11.84758 -11.52837 -11.41854 -10.85520 -10.80639 -10.01279 -9.90285 -9.71330 -8.29881 -6.46585 -0.02022 0.18978 0.84044 1.13804 1.19772 1.43701 1.47031 1.55391 1.59052 2.31087 2.47314 2.59953 3.03583 3.05220 3.21005 3.50650 3.68005 3.72691 3.91391 4.00864 4.02699 4.13207 4.33842 4.41718 4.55738 4.82062 5.04021 5.12315 5.15557 5.22604 5.24962 5.38767 5.42688 5.63398 5.77112 5.82162 6.20991 6.45301 6.62622 6.79897 7.20849 7.37463 8.81946 Molecular weight = 327.08amu Principal moments of inertia in cm(-1) A = 0.018631 B = 0.002774 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.477045 B =10090.134925 C =10695.719357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.005 3.995 3 Si 0.984 3.016 4 H -0.262 1.262 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.558 4.558 8 H 0.085 0.915 9 C 0.270 3.730 10 N -0.701 5.701 11 C 0.498 3.502 12 O -0.569 6.569 13 C 0.056 3.944 14 O -0.329 6.329 15 C 0.441 3.559 16 O -0.513 6.513 17 C 0.174 3.826 18 H 0.148 0.852 19 O -0.521 6.521 20 C -0.138 4.138 21 C -0.095 4.095 22 C -0.112 4.112 23 C -0.095 4.095 24 C -0.126 4.126 25 C -0.032 4.032 26 Cl -0.064 7.064 27 H 0.269 0.731 28 H -0.008 1.008 29 H -0.009 1.009 30 H 0.411 0.589 31 H 0.122 0.878 32 H 0.122 0.878 33 H 0.398 0.602 34 H 0.159 0.841 35 H 0.166 0.834 36 H 0.162 0.838 37 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.007 -24.500 -6.966 26.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.195 4.195 3 Si 0.807 3.193 4 H -0.186 1.186 5 H -0.211 1.211 6 H -0.187 1.187 7 C -0.596 4.596 8 H 0.103 0.897 9 C 0.147 3.853 10 N -0.353 5.353 11 C 0.283 3.717 12 O -0.449 6.449 13 C -0.021 4.021 14 O -0.243 6.243 15 C 0.284 3.716 16 O -0.402 6.402 17 C 0.113 3.887 18 H 0.165 0.835 19 O -0.329 6.329 20 C -0.139 4.139 21 C -0.113 4.113 22 C -0.129 4.129 23 C -0.113 4.113 24 C -0.144 4.144 25 C -0.059 4.059 26 Cl -0.035 7.035 27 H 0.078 0.922 28 H 0.010 0.990 29 H 0.009 0.991 30 H 0.247 0.753 31 H 0.140 0.860 32 H 0.139 0.861 33 H 0.250 0.750 34 H 0.177 0.823 35 H 0.184 0.816 36 H 0.180 0.820 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 4.970 -24.540 -6.310 25.821 hybrid contribution 0.495 1.550 -0.066 1.628 sum 5.465 -22.991 -6.376 24.476 Atomic orbital electron populations 1.70127 1.08233 1.28671 1.49810 1.26040 0.95757 1.03831 0.93834 0.85221 0.77920 0.76674 0.79498 1.18627 1.21148 1.18721 1.21586 0.94390 0.90486 1.53121 0.89692 1.18578 0.88487 0.83723 0.94464 1.46036 1.11597 1.04757 1.72910 1.20594 0.89420 0.84530 0.77112 1.90710 1.18403 1.85098 1.50651 1.22786 0.92849 0.79557 1.06878 1.86656 1.40624 1.14125 1.82922 1.24974 0.86901 0.87760 0.72002 1.90672 1.15610 1.87825 1.46104 1.20152 0.89329 0.80766 0.98491 0.83482 1.86709 1.43660 1.48568 1.53973 1.19937 0.93882 1.03316 0.96815 1.21243 1.01312 0.97054 0.91723 1.21633 0.94410 0.98933 0.97968 1.21627 0.95761 0.95200 0.98665 1.21370 1.01308 1.00122 0.91632 1.21052 0.94334 0.98946 0.91557 1.98445 1.82680 1.76267 1.46078 0.92211 0.99027 0.99121 0.75326 0.86026 0.86060 0.74993 0.82332 0.81629 0.82023 0.84153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.66 13.29 21.45 0.28 -55.37 16 2 C 0.01 0.29 5.46 84.65 0.46 0.75 16 3 Si 0.98 41.89 29.54 68.60 2.03 43.91 16 4 H -0.26 -10.53 7.11 99.48 0.71 -9.83 16 5 H -0.29 -12.13 7.11 99.48 0.71 -11.42 16 6 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 7 C -0.56 -29.89 9.28 25.60 0.24 -29.66 16 8 H 0.09 4.08 7.60 -2.91 -0.02 4.06 16 9 C 0.27 14.57 5.43 85.63 0.46 15.03 16 10 N -0.70 -28.94 5.55 -466.78 -2.59 -31.53 16 11 C 0.50 19.85 7.91 87.66 0.69 20.55 16 12 O -0.57 -28.02 16.50 15.75 0.26 -27.76 16 13 C 0.06 1.63 5.94 71.23 0.42 2.05 16 14 O -0.33 -10.04 8.49 -45.05 -0.38 -10.42 16 15 C 0.44 11.46 7.26 71.23 0.52 11.98 16 16 O -0.51 -14.21 16.07 28.35 0.46 -13.75 16 17 C 0.17 3.68 3.25 29.10 0.09 3.77 16 18 H 0.15 3.17 7.13 -2.39 -0.02 3.15 16 19 O -0.52 -9.28 12.64 -129.95 -1.64 -10.92 16 20 C -0.14 -2.75 5.04 -19.84 -0.10 -2.85 16 21 C -0.10 -1.32 9.30 22.26 0.21 -1.11 16 22 C -0.11 -1.25 10.05 22.27 0.22 -1.02 16 23 C -0.09 -1.25 10.05 22.27 0.22 -1.02 16 24 C -0.13 -2.40 9.83 22.29 0.22 -2.18 16 25 C -0.03 -0.74 6.31 22.32 0.14 -0.60 16 26 Cl -0.06 -1.80 26.16 -2.72 -0.07 -1.88 16 27 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 28 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 29 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 30 H 0.41 13.73 8.32 -92.71 -0.77 12.96 16 31 H 0.12 2.97 8.13 -2.38 -0.02 2.95 16 32 H 0.12 2.93 8.13 -2.39 -0.02 2.91 16 33 H 0.40 4.46 7.07 -74.06 -0.52 3.93 16 34 H 0.16 1.22 6.40 -2.91 -0.02 1.20 16 35 H 0.17 0.74 8.06 -2.91 -0.02 0.71 16 36 H 0.16 1.17 8.06 -2.91 -0.02 1.15 16 37 H 0.14 2.50 8.06 -2.91 -0.02 2.47 16 Total: -1.00 -76.47 346.23 2.00 -74.47 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: -0.15 Total: 17.56 kcal Atomic # 6 Polarization: 11.88 SS G_CDS: 3.81 Total: 15.68 kcal Atomic # 7 Polarization: -84.60 SS G_CDS: -2.30 Total: -86.90 kcal Atomic # 8 Polarization: -61.54 SS G_CDS: -1.31 Total: -62.85 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.91 kcal Atomic # 17 Polarization: -1.80 SS G_CDS: -0.07 Total: -1.88 kcal Total: -76.47 2.00 -74.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000768605027.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.361 kcal (2) G-P(sol) polarization free energy of solvation -76.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds