Wall clock time and date at job start Fri Apr 10 2020 14:50:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86805 * 119.99716 * 2 1 4 4 H 1.48504 * 109.47068 * 269.99553 * 3 2 1 5 5 H 1.48498 * 109.47250 * 29.99280 * 3 2 1 6 6 H 1.48496 * 109.47079 * 149.99470 * 3 2 1 7 7 C 1.37868 * 120.00365 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00178 * 359.97438 * 7 2 1 9 9 C 1.50702 * 120.00357 * 180.02562 * 7 2 1 10 10 N 1.46504 * 109.47263 * 180.02562 * 9 7 2 11 11 C 1.34774 * 119.99879 * 179.97438 * 10 9 7 12 12 O 1.21285 * 120.00053 * 359.97438 * 11 10 9 13 13 C 1.50701 * 120.00035 * 179.97438 * 11 10 9 14 14 O 1.45196 * 109.46912 * 179.97438 * 13 11 10 15 15 C 1.34235 * 116.99701 * 180.02562 * 14 13 11 16 16 O 1.20825 * 120.00160 * 359.97438 * 15 14 13 17 17 C 1.50695 * 119.99933 * 180.02562 * 15 14 13 18 18 H 1.09001 * 109.47311 * 305.00043 * 17 15 14 19 19 O 1.42906 * 109.47201 * 184.99908 * 17 15 14 20 20 C 1.50696 * 109.47501 * 64.99948 * 17 15 14 21 21 C 1.38247 * 119.98658 * 265.00328 * 20 17 15 22 22 C 1.38216 * 120.01497 * 179.97438 * 21 20 17 23 23 C 1.38357 * 119.98603 * 0.02562 * 22 21 20 24 24 Cl 1.73599 * 120.01134 * 180.02562 * 23 22 21 25 25 C 1.38347 * 119.97107 * 0.28224 * 23 22 21 26 26 C 1.38219 * 119.98930 * 359.40143 * 25 23 22 27 27 H 0.97000 * 120.00203 * 0.02562 * 1 2 3 28 28 H 1.08995 * 109.47136 * 59.99362 * 9 7 2 29 29 H 1.09005 * 109.46659 * 299.99738 * 9 7 2 30 30 H 0.96993 * 119.99745 * 359.97438 * 10 9 7 31 31 H 1.09004 * 109.46816 * 60.00324 * 13 11 10 32 32 H 1.08993 * 109.47094 * 300.00315 * 13 11 10 33 33 H 0.96695 * 113.99566 * 299.99518 * 19 17 15 34 34 H 1.08003 * 119.99321 * 359.97438 * 21 20 17 35 35 H 1.08002 * 120.00776 * 180.02562 * 22 21 20 36 36 H 1.08000 * 120.00661 * 179.71600 * 25 23 22 37 37 H 1.07997 * 119.99445 * 180.32231 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1939 0.0005 8 1 1.4647 -2.1293 0.0014 9 6 3.5116 -1.1939 0.0011 10 7 4.0000 -2.5752 0.0010 11 6 5.3251 -2.8214 0.0009 12 8 6.1132 -1.8995 0.0005 13 6 5.8275 -4.2422 0.0014 14 8 7.2795 -4.2420 0.0006 15 6 7.8889 -5.4381 0.0004 16 8 7.2309 -6.4514 0.0013 17 6 9.3938 -5.5168 0.0001 18 1 9.7874 -4.9471 -0.8416 19 8 9.7993 -6.8821 -0.1175 20 6 9.9271 -4.9437 1.2878 21 6 10.3255 -3.6210 1.3426 22 6 10.8142 -3.0945 2.5235 23 6 10.9052 -3.8917 3.6506 24 17 11.5183 -3.2310 5.1343 25 6 10.5123 -5.2170 3.5934 26 6 10.0176 -5.7406 2.4137 27 1 -0.4850 0.8400 -0.0004 28 1 3.8746 -0.6798 0.8910 29 1 3.8752 -0.6803 -0.8889 30 1 3.3697 -3.3124 0.0010 31 1 5.4641 -4.7563 -0.8884 32 1 5.4643 -4.7557 0.8915 33 1 9.4841 -7.4491 0.5995 34 1 10.2548 -2.9989 0.4626 35 1 11.1250 -2.0611 2.5663 36 1 10.5874 -5.8410 4.4717 37 1 9.7060 -6.7737 2.3704 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000811280989.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:50:42 Heat of formation + Delta-G solvation = -150.320060 kcal Electronic energy + Delta-G solvation = -24343.904020 eV Core-core repulsion = 20305.452232 eV Total energy + Delta-G solvation = -4038.451788 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.075 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.20494 -39.81732 -38.95324 -37.56259 -36.77945 -36.18749 -34.43680 -32.48510 -32.15439 -31.47645 -29.74628 -27.96911 -26.73652 -23.34566 -22.89824 -22.15148 -21.23351 -20.20558 -18.70005 -18.30778 -17.72549 -17.08106 -16.98019 -16.36095 -16.16779 -15.88540 -15.26143 -14.98994 -14.88123 -14.35455 -14.23740 -13.93248 -13.91085 -13.48795 -13.24029 -12.99271 -12.71427 -12.42989 -12.40882 -12.14191 -11.97601 -11.95308 -11.43822 -11.21118 -11.11157 -10.94871 -10.81264 -10.59584 -10.03907 -9.58753 -9.49192 -9.42519 -9.08276 -8.85777 -8.33008 -6.27676 -4.31127 0.54024 0.84298 1.71007 1.79274 2.10717 2.94982 3.09143 3.22339 3.29382 3.36690 3.70053 3.75852 3.98580 4.23641 4.27476 4.40075 4.47875 4.64776 4.83709 4.94618 5.04483 5.06095 5.08625 5.13962 5.16788 5.46513 5.65729 5.78223 5.91506 6.04538 6.27526 6.67591 6.81444 6.95960 7.02687 7.27000 7.35732 7.99296 8.36048 8.62084 8.74448 9.31133 10.84073 Molecular weight = 327.08amu Principal moments of inertia in cm(-1) A = 0.012612 B = 0.002729 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2219.507420 B =10258.655004 C =11879.076894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.079 3.921 3 Si 0.877 3.123 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.547 4.547 8 H 0.081 0.919 9 C 0.223 3.777 10 N -0.699 5.699 11 C 0.502 3.498 12 O -0.535 6.535 13 C 0.048 3.952 14 O -0.322 6.322 15 C 0.436 3.564 16 O -0.498 6.498 17 C 0.169 3.831 18 H 0.152 0.848 19 O -0.521 6.521 20 C -0.122 4.122 21 C -0.072 4.072 22 C -0.106 4.106 23 C -0.026 4.026 24 Cl -0.067 7.067 25 C -0.109 4.109 26 C -0.094 4.094 27 H 0.269 0.731 28 H 0.028 0.972 29 H 0.024 0.976 30 H 0.399 0.601 31 H 0.101 0.899 32 H 0.099 0.901 33 H 0.385 0.615 34 H 0.143 0.857 35 H 0.140 0.860 36 H 0.137 0.863 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.305 -12.504 5.098 26.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.125 4.125 3 Si 0.703 3.297 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.185 1.185 7 C -0.585 4.585 8 H 0.099 0.901 9 C 0.101 3.899 10 N -0.349 5.349 11 C 0.285 3.715 12 O -0.413 6.413 13 C -0.030 4.030 14 O -0.236 6.236 15 C 0.278 3.722 16 O -0.386 6.386 17 C 0.107 3.893 18 H 0.169 0.831 19 O -0.327 6.327 20 C -0.123 4.123 21 C -0.090 4.090 22 C -0.125 4.125 23 C -0.052 4.052 24 Cl -0.038 7.038 25 C -0.128 4.128 26 C -0.112 4.112 27 H 0.079 0.921 28 H 0.046 0.954 29 H 0.042 0.958 30 H 0.233 0.767 31 H 0.119 0.881 32 H 0.117 0.883 33 H 0.236 0.764 34 H 0.161 0.839 35 H 0.158 0.842 36 H 0.155 0.845 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 23.787 -11.706 4.705 26.925 hybrid contribution -0.542 0.288 0.657 0.899 sum 23.245 -11.418 5.362 26.447 Atomic orbital electron populations 1.69875 1.06222 1.27551 1.49070 1.24788 0.94802 0.99193 0.93762 0.86818 0.80570 0.83204 0.79119 1.19764 1.20801 1.18477 1.21057 0.88311 0.95351 1.53759 0.90128 1.19560 0.95393 0.77868 0.97080 1.46072 1.04829 1.11604 1.72403 1.19878 0.83756 0.89317 0.78512 1.90701 1.55303 1.45582 1.49706 1.22884 0.77550 0.97595 1.04941 1.86551 1.22081 1.32120 1.82890 1.24601 0.92755 0.82025 0.72859 1.90703 1.66460 1.36375 1.45047 1.20242 0.85727 0.85309 0.97987 0.83116 1.86716 1.75643 1.17234 1.53154 1.20142 1.01917 0.95379 0.94880 1.21029 0.95595 0.93912 0.98453 1.21124 0.99718 1.00436 0.91176 1.21054 1.01523 0.94335 0.88314 1.98389 1.85917 1.85896 1.33591 1.20984 0.99372 0.93636 0.98778 1.20830 0.98741 0.99981 0.91668 0.92146 0.95409 0.95849 0.76692 0.88125 0.88267 0.76439 0.83878 0.84204 0.84475 0.84994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.97 13.96 55.43 0.77 -25.20 16 2 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 3 Si 0.88 20.92 27.47 -169.99 -4.67 16.25 16 4 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 6 H -0.26 -6.16 6.54 56.52 0.37 -5.79 16 7 C -0.55 -14.59 9.83 -34.44 -0.34 -14.93 16 8 H 0.08 2.23 7.84 -52.49 -0.41 1.82 16 9 C 0.22 5.28 4.50 -5.19 -0.02 5.25 16 10 N -0.70 -13.43 5.55 -61.47 -0.34 -13.77 16 11 C 0.50 9.15 7.91 -10.99 -0.09 9.06 16 12 O -0.54 -11.76 16.50 -14.11 -0.23 -12.00 16 13 C 0.05 0.65 5.94 36.01 0.21 0.87 16 14 O -0.32 -4.44 9.74 -45.92 -0.45 -4.88 16 15 C 0.44 5.13 7.26 36.00 0.26 5.39 16 16 O -0.50 -6.72 16.07 -25.46 -0.41 -7.13 16 17 C 0.17 1.47 3.73 -29.04 -0.11 1.36 16 18 H 0.15 1.05 8.05 -51.93 -0.42 0.63 16 19 O -0.52 -4.39 12.79 -55.14 -0.71 -5.09 16 20 C -0.12 -1.05 4.98 -104.62 -0.52 -1.57 16 21 C -0.07 -0.63 9.68 -39.59 -0.38 -1.01 16 22 C -0.11 -0.94 9.83 -39.55 -0.39 -1.33 16 23 C -0.03 -0.23 6.32 -39.50 -0.25 -0.48 16 24 Cl -0.07 -0.59 28.96 -51.86 -1.50 -2.09 16 25 C -0.11 -0.87 9.83 -39.55 -0.39 -1.25 16 26 C -0.09 -0.72 9.33 -39.59 -0.37 -1.09 16 27 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 28 H 0.03 0.70 7.20 -51.93 -0.37 0.32 16 29 H 0.02 0.58 7.57 -51.93 -0.39 0.18 16 30 H 0.40 6.61 8.32 -40.82 -0.34 6.27 16 31 H 0.10 1.20 8.13 -51.93 -0.42 0.78 16 32 H 0.10 1.19 8.13 -51.93 -0.42 0.77 16 33 H 0.39 2.26 7.14 45.56 0.33 2.58 16 34 H 0.14 1.07 8.06 -52.48 -0.42 0.65 16 35 H 0.14 1.06 8.06 -52.49 -0.42 0.63 16 36 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 37 H 0.13 0.70 6.61 -52.49 -0.35 0.35 16 LS Contribution 347.89 15.07 5.24 5.24 Total: -1.00 -33.92 347.89 -8.01 -41.93 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -3.24 Total: 4.38 kcal Atomic # 6 Polarization: 4.83 SS G_CDS: -2.48 Total: 2.35 kcal Atomic # 7 Polarization: -39.40 SS G_CDS: 0.43 Total: -38.97 kcal Atomic # 8 Polarization: -27.30 SS G_CDS: -1.79 Total: -29.10 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.67 Total: 16.25 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -1.50 Total: -2.09 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.92 -8.01 -41.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811280989.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.393 kcal (2) G-P(sol) polarization free energy of solvation -33.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds