Wall clock time and date at job start Fri Apr 10 2020 14:49:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.53003 * 109.46992 * 33.98011 * 3 2 1 5 5 N 1.46502 * 109.46991 * 179.97438 * 4 3 2 6 6 C 1.46500 * 120.00289 * 275.00187 * 5 4 3 7 7 C 1.50703 * 109.46653 * 275.00149 * 6 5 4 8 8 H 1.07997 * 120.00505 * 359.97438 * 7 6 5 9 9 C 1.37882 * 119.99328 * 179.97438 * 7 6 5 10 10 N 1.31509 * 120.00388 * 359.97438 * 9 7 6 11 11 Si 1.86810 * 119.99589 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.46983 * 59.99675 * 11 9 7 13 13 H 1.48491 * 109.46971 * 179.97438 * 11 9 7 14 14 H 1.48504 * 109.46690 * 299.99986 * 11 9 7 15 15 S 1.65601 * 119.99697 * 94.99853 * 5 4 3 16 16 O 1.42098 * 106.40640 * 336.46203 * 15 5 4 17 17 O 1.42106 * 106.39935 * 203.53921 * 15 5 4 18 18 C 1.76205 * 107.21792 * 90.00350 * 15 5 4 19 19 C 1.35485 * 126.07578 * 269.99605 * 18 15 5 20 20 N 1.34960 * 108.98467 * 179.97438 * 19 18 15 21 21 H 0.96999 * 125.63628 * 180.02562 * 20 19 18 22 22 C 1.37698 * 108.72508 * 359.75579 * 20 19 18 23 23 C 1.46500 * 126.26023 * 180.24627 * 22 20 19 24 24 O 1.21620 * 120.00050 * 180.17375 * 23 22 20 25 25 O 1.34892 * 119.99956 * 0.17142 * 23 22 20 26 26 C 1.37990 * 107.47945 * 0.39602 * 22 20 19 27 27 H 1.09001 * 109.47071 * 273.97985 * 3 2 1 28 28 H 1.08994 * 109.46822 * 153.97491 * 3 2 1 29 29 H 1.09001 * 109.47234 * 60.00074 * 4 3 2 30 30 H 1.09006 * 109.47276 * 299.99660 * 4 3 2 31 31 H 1.09003 * 109.46601 * 34.99481 * 6 5 4 32 32 H 1.08993 * 109.47406 * 154.99855 * 6 5 4 33 33 H 0.97001 * 119.99773 * 179.97438 * 10 9 7 34 34 H 1.07997 * 125.50653 * 0.04011 * 19 18 15 35 35 H 0.96701 * 117.00201 * 179.97438 * 25 23 22 36 36 H 1.08002 * 126.52131 * 179.88107 * 26 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1185 -1.1953 -0.8062 5 7 4.5835 -1.1943 -0.8068 6 6 5.3152 -0.3959 -1.7933 7 6 5.4592 -1.1837 -3.0699 8 1 5.0473 -2.1796 -3.1393 9 6 6.1168 -0.6328 -4.1494 10 7 6.6179 0.5801 -4.0651 11 14 6.2959 -1.6096 -5.7317 12 1 4.9497 -1.9422 -6.2631 13 1 7.0363 -0.7998 -6.7321 14 1 7.0434 -2.8632 -5.4575 15 16 5.4125 -2.0957 0.3080 16 8 4.5313 -2.2846 1.4067 17 8 6.6951 -1.4971 0.4343 18 6 5.6742 -3.6882 -0.3994 19 6 4.8447 -4.7542 -0.2938 20 7 5.3794 -5.7949 -0.9665 21 1 4.9853 -6.6774 -1.0482 22 6 6.5739 -5.3950 -1.5226 23 6 7.4699 -6.2199 -2.3368 24 8 8.5040 -5.7489 -2.7703 25 8 7.1480 -7.5020 -2.6055 26 6 6.7743 -4.0760 -1.1700 27 1 2.9714 -0.0705 1.0252 28 1 2.9708 0.9242 -0.4509 29 1 2.7551 -1.1241 -1.8314 30 1 2.7556 -2.1190 -0.3554 31 1 4.7670 0.5246 -1.9943 32 1 6.3034 -0.1525 -1.4031 33 1 7.0809 0.9674 -4.8245 34 1 3.9067 -4.7685 0.2413 35 1 7.7702 -8.0067 -3.1471 36 1 7.6182 -3.4592 -1.4416 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037225831.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:49:03 Heat of formation + Delta-G solvation = -91.699019 kcal Electronic energy + Delta-G solvation = -25820.157405 eV Core-core repulsion = 21818.584074 eV Total energy + Delta-G solvation = -4001.573331 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 327.077 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -41.47913 -39.65200 -37.15927 -36.63270 -36.18522 -35.67929 -35.25958 -32.78688 -31.46310 -30.66500 -29.83973 -26.95256 -24.22838 -23.79375 -22.30681 -21.76110 -20.42723 -19.42403 -17.97512 -17.77710 -17.52459 -16.79871 -16.44265 -15.89289 -15.84427 -15.45086 -15.39331 -14.67659 -14.52268 -14.18188 -13.83156 -13.65706 -13.45632 -13.36756 -12.68480 -12.58253 -12.50951 -12.28061 -11.94649 -11.72762 -11.70459 -11.54698 -11.36119 -11.14516 -11.00113 -10.97227 -10.79564 -10.60371 -10.49916 -10.12313 -9.86597 -9.47201 -8.60253 -8.49527 -8.22702 -6.12468 -4.18320 1.02538 1.15232 2.07060 2.68548 2.90203 2.96723 3.03188 3.08499 3.27586 3.33357 3.36272 3.62975 4.20708 4.37833 4.40433 4.65187 4.87634 5.02619 5.13517 5.23324 5.30993 5.41644 5.57938 5.65619 5.78052 5.93089 6.18475 6.28112 6.34660 6.40597 6.63514 7.12894 7.20937 7.36403 7.51770 7.72504 7.76054 7.84062 8.11417 8.85907 9.48639 10.95554 Molecular weight = 327.08amu Principal moments of inertia in cm(-1) A = 0.009325 B = 0.005882 C = 0.004314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3002.096135 B = 4759.290644 C = 6488.386907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C 0.223 3.777 3 C -0.054 4.054 4 C 0.139 3.861 5 N -0.981 5.981 6 C 0.242 3.758 7 C -0.542 4.542 8 H 0.062 0.938 9 C 0.069 3.931 10 N -0.888 5.888 11 Si 0.886 3.114 12 H -0.278 1.278 13 H -0.286 1.286 14 H -0.274 1.274 15 S 2.716 3.284 16 O -0.980 6.980 17 O -0.952 6.952 18 C -0.746 4.746 19 C 0.151 3.849 20 N -0.519 5.519 21 H 0.425 0.575 22 C -0.067 4.067 23 C 0.555 3.445 24 O -0.497 6.497 25 O -0.525 6.525 26 C 0.028 3.972 27 H 0.113 0.887 28 H 0.119 0.881 29 H 0.093 0.907 30 H 0.075 0.925 31 H 0.044 0.956 32 H 0.058 0.942 33 H 0.265 0.735 34 H 0.191 0.809 35 H 0.416 0.584 36 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.045 -12.138 6.378 14.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.131 5.131 2 C -0.095 4.095 3 C -0.096 4.096 4 C 0.010 3.990 5 N -0.819 5.819 6 C 0.121 3.879 7 C -0.581 4.581 8 H 0.080 0.920 9 C -0.134 4.134 10 N -0.526 5.526 11 Si 0.714 3.286 12 H -0.204 1.204 13 H -0.212 1.212 14 H -0.200 1.200 15 S 2.804 3.196 16 O -0.971 6.971 17 O -0.942 6.942 18 C -0.838 4.838 19 C 0.006 3.994 20 N -0.113 5.113 21 H 0.264 0.736 22 C -0.176 4.176 23 C 0.399 3.601 24 O -0.385 6.385 25 O -0.338 6.338 26 C 0.003 3.997 27 H 0.131 0.869 28 H 0.137 0.863 29 H 0.112 0.888 30 H 0.093 0.907 31 H 0.062 0.938 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.208 0.792 35 H 0.275 0.725 36 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -4.302 -11.570 7.100 14.240 hybrid contribution 0.731 -1.845 -2.152 2.927 sum -3.571 -13.415 4.948 14.737 Atomic orbital electron populations 1.81178 1.13122 1.09206 1.09565 1.29129 0.95119 0.92732 0.92510 1.19930 0.81270 1.03675 1.04705 1.20888 0.80761 0.95879 1.01454 1.57462 1.12789 1.60129 1.51489 1.19339 0.92523 0.90660 0.85419 1.21470 1.36944 1.02068 0.97607 0.91988 1.24872 0.95115 0.94829 0.98600 1.69894 1.36649 1.14436 1.31572 0.86738 0.78209 0.80412 0.83233 1.20376 1.21153 1.19960 1.01161 0.73251 0.72565 0.72631 1.93513 1.66711 1.87037 1.49803 1.93567 1.40226 1.74960 1.85455 1.31421 1.05613 1.23107 1.23662 1.21791 0.97996 0.85492 0.94146 1.42056 1.17203 1.13228 1.38766 0.73605 1.19326 0.91362 0.95711 1.11171 1.19393 0.83758 0.79469 0.77462 1.91006 1.24813 1.72839 1.49794 1.84542 1.54916 1.25166 1.69218 1.21105 0.96779 0.91037 0.90811 0.86908 0.86323 0.88846 0.90663 0.93765 0.92404 0.92486 0.79227 0.72485 0.81186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -7.07 18.54 42.15 0.78 -6.29 16 2 C 0.22 2.95 15.43 -20.76 -0.32 2.63 16 3 C -0.05 -0.63 6.02 -29.52 -0.18 -0.81 16 4 C 0.14 1.86 5.30 -4.04 -0.02 1.84 16 5 N -0.98 -16.52 2.77 -115.66 -0.32 -16.84 16 6 C 0.24 5.21 5.43 -5.19 -0.03 5.18 16 7 C -0.54 -13.09 9.38 -34.44 -0.32 -13.41 16 8 H 0.06 1.46 7.81 -52.49 -0.41 1.05 16 9 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 10 N -0.89 -24.17 13.29 55.43 0.74 -23.44 16 11 Si 0.89 20.52 29.54 -169.99 -5.02 15.50 16 12 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 13 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 14 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 15 S 2.72 45.56 5.79 -107.50 -0.62 44.94 16 16 O -0.98 -15.76 16.82 -57.17 -0.96 -16.72 16 17 O -0.95 -19.51 16.42 -57.17 -0.94 -20.45 16 18 C -0.75 -11.46 6.18 -39.98 -0.25 -11.71 16 19 C 0.15 1.73 11.61 -17.16 -0.20 1.53 16 20 N -0.52 -5.57 6.07 -9.53 -0.06 -5.63 16 21 H 0.43 2.97 8.96 -40.82 -0.37 2.61 16 22 C -0.07 -0.98 7.10 -81.99 -0.58 -1.56 16 23 C 0.55 7.88 8.30 34.06 0.28 8.16 16 24 O -0.50 -8.82 17.67 -19.36 -0.34 -9.16 16 25 O -0.53 -5.05 13.44 -41.02 -0.55 -5.60 16 26 C 0.03 0.47 10.46 -39.09 -0.41 0.06 16 27 H 0.11 1.21 8.14 -51.93 -0.42 0.78 16 28 H 0.12 1.30 8.14 -51.93 -0.42 0.88 16 29 H 0.09 1.28 8.11 -51.93 -0.42 0.86 16 30 H 0.08 0.84 7.61 -51.93 -0.40 0.44 16 31 H 0.04 0.96 8.11 -51.93 -0.42 0.54 16 32 H 0.06 1.39 6.91 -51.93 -0.36 1.03 16 33 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 34 H 0.19 1.42 8.06 -52.49 -0.42 1.00 16 35 H 0.42 2.16 9.11 45.56 0.42 2.57 16 36 H 0.17 3.13 8.06 -52.49 -0.42 2.70 16 LS Contribution 349.70 15.07 5.27 5.27 Total: -1.00 -34.99 349.70 -6.93 -41.93 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -2.78 Total: 2.88 kcal Atomic # 6 Polarization: -4.27 SS G_CDS: -2.12 Total: -6.39 kcal Atomic # 7 Polarization: -53.34 SS G_CDS: 1.14 Total: -52.20 kcal Atomic # 8 Polarization: -49.14 SS G_CDS: -2.79 Total: -51.93 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Atomic # 16 Polarization: 45.56 SS G_CDS: -0.62 Total: 44.94 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -34.99 -6.93 -41.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037225831.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.772 kcal (2) G-P(sol) polarization free energy of solvation -34.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds