Wall clock time and date at job start Fri Apr 10 2020 14:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00134 * 2 1 4 4 H 1.48506 * 109.46931 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47142 * 300.00049 * 3 2 1 6 6 H 1.48496 * 109.47324 * 60.00263 * 3 2 1 7 7 C 1.37879 * 119.99606 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99794 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00255 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47026 * 180.02562 * 9 7 2 11 11 S 1.81398 * 109.46864 * 180.02562 * 10 9 7 12 12 O 1.42101 * 110.54652 * 68.37237 * 11 10 9 13 13 O 1.42102 * 110.54135 * 291.61606 * 11 10 9 14 14 N 1.65597 * 104.44890 * 179.97438 * 11 10 9 15 15 C 1.47019 * 125.65385 * 89.97085 * 14 11 10 16 16 C 1.54319 * 107.27362 * 178.97696 * 15 14 11 17 17 H 1.09001 * 110.72397 * 96.35159 * 16 15 14 18 18 C 1.50700 * 110.72019 * 219.44330 * 16 15 14 19 19 O 1.20826 * 120.00162 * 118.82231 * 18 16 15 20 20 O 1.34234 * 120.00068 * 298.54657 * 18 16 15 21 21 C 1.55155 * 102.94404 * 337.80668 * 16 15 14 22 22 H 1.08994 * 111.00708 * 277.42840 * 21 16 15 23 23 C 1.53002 * 111.00179 * 153.57577 * 21 16 15 24 24 F 1.39905 * 109.46842 * 180.02562 * 23 21 16 25 25 F 1.39897 * 109.47487 * 299.99745 * 23 21 16 26 26 C 1.47426 * 125.64656 * 270.01474 * 14 11 10 27 27 H 0.97006 * 119.99890 * 359.97438 * 1 2 3 28 28 H 1.08994 * 109.47111 * 60.00068 * 9 7 2 29 29 H 1.09003 * 109.46874 * 299.99954 * 9 7 2 30 30 H 1.08994 * 109.47437 * 59.99879 * 10 9 7 31 31 H 1.09003 * 109.46939 * 299.99525 * 10 9 7 32 32 H 1.09004 * 109.87852 * 59.55825 * 15 14 11 33 33 H 1.09000 * 109.88009 * 298.39885 * 15 14 11 34 34 H 0.96706 * 116.99872 * 179.97438 * 20 18 16 35 35 H 1.08994 * 109.47193 * 60.00881 * 23 21 16 36 36 H 1.09002 * 110.36443 * 322.92918 * 26 14 11 37 37 H 1.09005 * 110.37017 * 85.14195 * 26 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6622 -0.0005 11 16 1.3381 -5.2331 -0.0013 12 8 0.6644 -5.4194 -1.2385 13 8 0.6638 -5.4201 1.2355 14 7 2.5202 -6.3928 -0.0020 15 6 3.1324 -6.9931 1.1923 16 6 4.1590 -8.0373 0.7053 17 1 5.1614 -7.6099 0.6798 18 6 4.1269 -9.2645 1.5793 19 8 3.8404 -10.3376 1.1037 20 8 4.4221 -9.1664 2.8851 21 6 3.6634 -8.3702 -0.7268 22 1 2.8627 -9.1092 -0.7013 23 6 4.8185 -8.8466 -1.6099 24 9 4.3371 -9.1367 -2.8910 25 9 5.7875 -7.8409 -1.6931 26 6 3.1336 -6.9936 -1.2003 27 1 -0.4850 0.8401 0.0004 28 1 0.6239 -2.5568 -0.8902 29 1 0.6246 -2.5571 0.8897 30 1 2.8718 -3.6045 0.8894 31 1 2.8717 -3.6045 -0.8906 32 1 2.3667 -7.4798 1.7965 33 1 3.6355 -6.2234 1.7776 34 1 4.3877 -9.9809 3.4054 35 1 5.2615 -9.7431 -1.1763 36 1 2.3872 -7.1236 -1.9839 37 1 3.9544 -6.3722 -1.5585 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592447587.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:49:12 Heat of formation + Delta-G solvation = -268.982172 kcal Electronic energy + Delta-G solvation = -26557.735848 eV Core-core repulsion = 22097.785756 eV Total energy + Delta-G solvation = -4459.950092 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.083 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.30581 -47.27844 -41.02928 -38.54848 -36.73379 -36.59217 -35.56032 -33.93638 -32.35774 -31.20662 -30.43969 -26.12525 -25.63839 -24.46873 -22.26681 -21.55583 -20.77580 -18.91707 -18.58635 -18.10853 -17.84650 -17.45088 -17.18797 -16.73843 -16.24129 -16.01585 -15.66797 -15.46905 -14.70741 -14.57388 -14.24217 -13.99300 -13.75328 -13.68576 -13.56366 -13.39789 -13.09872 -12.57003 -12.52963 -12.24226 -12.03201 -11.81987 -11.78817 -11.74085 -11.66162 -11.48505 -11.12021 -11.10618 -11.01187 -11.00225 -10.45175 -10.43692 -9.83372 -9.41487 -8.94394 -8.53677 -6.15562 -4.21340 0.56346 1.64700 2.40550 2.82352 3.23783 3.31240 3.32945 3.34555 3.41546 3.77509 4.04065 4.19055 4.23752 4.35153 4.46659 4.53820 4.62687 4.79584 4.84788 4.97782 5.19868 5.20322 5.39470 5.42241 5.51171 5.59225 5.61030 5.86425 5.98960 6.18087 6.42261 7.25172 7.30686 7.36471 7.77548 8.13371 8.82270 9.43806 10.95473 Molecular weight = 327.08amu Principal moments of inertia in cm(-1) A = 0.017249 B = 0.003269 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.861592 B = 8562.267188 C = 8923.945852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.900 3.100 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.520 4.520 8 H 0.063 0.937 9 C 0.027 3.973 10 C -0.585 4.585 11 S 2.603 3.397 12 O -0.956 6.956 13 O -0.957 6.957 14 N -1.018 6.018 15 C 0.138 3.862 16 C -0.090 4.090 17 H 0.136 0.864 18 C 0.493 3.507 19 O -0.510 6.510 20 O -0.507 6.507 21 C -0.139 4.139 22 H 0.130 0.870 23 C 0.276 3.724 24 F -0.197 7.197 25 F -0.200 7.200 26 C 0.120 3.880 27 H 0.265 0.735 28 H 0.034 0.966 29 H 0.034 0.966 30 H 0.121 0.879 31 H 0.121 0.879 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.415 0.585 35 H 0.117 0.883 36 H 0.101 0.899 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.270 -19.868 2.196 23.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.145 4.145 3 Si 0.728 3.272 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.560 4.560 8 H 0.081 0.919 9 C -0.012 4.012 10 C -0.719 4.719 11 S 2.703 3.297 12 O -0.946 6.946 13 O -0.948 6.948 14 N -0.854 5.854 15 C 0.012 3.988 16 C -0.111 4.111 17 H 0.154 0.846 18 C 0.334 3.666 19 O -0.398 6.398 20 O -0.319 6.319 21 C -0.159 4.159 22 H 0.148 0.852 23 C 0.222 3.778 24 F -0.178 7.178 25 F -0.181 7.181 26 C -0.006 4.006 27 H 0.075 0.925 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.139 0.861 31 H 0.140 0.860 32 H 0.099 0.901 33 H 0.107 0.893 34 H 0.274 0.726 35 H 0.135 0.865 36 H 0.119 0.881 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 11.042 -19.825 1.809 22.765 hybrid contribution 1.091 0.706 0.292 1.332 sum 12.133 -19.119 2.101 22.741 Atomic orbital electron populations 1.69964 1.06132 1.27151 1.49556 1.25071 0.94976 0.99581 0.94845 0.86404 0.79931 0.83110 0.77789 1.19619 1.20773 1.20779 1.21026 0.93114 0.89644 1.52177 0.91927 1.18995 0.92717 0.90547 0.98966 1.30473 1.13726 1.17418 1.10288 1.05533 0.74027 0.75996 0.74175 1.93550 1.70620 1.85156 1.45312 1.93547 1.70683 1.85174 1.45375 1.59007 1.58483 1.56522 1.11350 1.21469 0.94588 0.94983 0.87791 1.22117 1.04132 0.92688 0.92148 0.84626 1.22941 0.72205 0.90190 0.81260 1.90753 1.44284 1.30009 1.74731 1.84542 1.81616 1.43938 1.21792 1.23525 0.98874 1.01023 0.92497 0.85164 1.21664 0.85644 0.89860 0.80682 1.93021 1.88873 1.93851 1.42056 1.92995 1.64781 1.63890 1.96482 1.22024 0.99096 0.90929 0.88532 0.92541 0.94757 0.94778 0.86055 0.86016 0.90054 0.89274 0.72555 0.86529 0.88107 0.89859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.16 13.29 55.43 0.74 -25.42 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 4 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.52 -14.12 9.11 -34.44 -0.31 -14.44 16 8 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 9 C 0.03 0.67 4.98 -27.88 -0.14 0.53 16 10 C -0.59 -10.74 6.12 37.16 0.23 -10.51 16 11 S 2.60 45.02 5.65 -107.50 -0.61 44.41 16 12 O -0.96 -19.22 17.28 -57.54 -0.99 -20.21 16 13 O -0.96 -19.04 17.60 -57.54 -1.01 -20.05 16 14 N -1.02 -12.85 3.62 -111.42 -0.40 -13.25 16 15 C 0.14 1.37 6.47 -3.07 -0.02 1.35 16 16 C -0.09 -0.70 2.88 -89.94 -0.26 -0.96 16 17 H 0.14 0.77 7.56 -51.93 -0.39 0.38 16 18 C 0.49 3.84 7.49 36.01 0.27 4.11 16 19 O -0.51 -5.14 16.52 -18.75 -0.31 -5.45 16 20 O -0.51 -2.91 13.40 -39.27 -0.53 -3.44 16 21 C -0.14 -1.21 2.32 -88.47 -0.20 -1.42 16 22 H 0.13 1.18 7.49 -51.93 -0.39 0.79 16 23 C 0.28 2.20 4.99 37.16 0.19 2.38 16 24 F -0.20 -1.97 17.27 2.25 0.04 -1.93 16 25 F -0.20 -1.79 15.78 2.25 0.04 -1.75 16 26 C 0.12 1.29 6.44 -2.53 -0.02 1.28 16 27 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 28 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.12 1.96 8.14 -51.93 -0.42 1.54 16 31 H 0.12 2.01 8.14 -51.92 -0.42 1.58 16 32 H 0.08 0.84 7.81 -51.93 -0.41 0.44 16 33 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.41 0.68 9.10 45.56 0.41 1.10 16 35 H 0.12 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.10 1.16 7.67 -51.93 -0.40 0.76 16 37 H 0.08 0.80 7.26 -51.93 -0.38 0.43 16 LS Contribution 339.32 15.07 5.11 5.11 Total: -1.00 -36.48 339.32 -6.94 -43.43 By element: Atomic # 1 Polarization: 2.41 SS G_CDS: -3.63 Total: -1.21 kcal Atomic # 6 Polarization: -15.78 SS G_CDS: -0.37 Total: -16.15 kcal Atomic # 7 Polarization: -39.01 SS G_CDS: 0.33 Total: -38.68 kcal Atomic # 8 Polarization: -46.30 SS G_CDS: -2.84 Total: -49.15 kcal Atomic # 9 Polarization: -3.75 SS G_CDS: 0.07 Total: -3.68 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 16 Polarization: 45.02 SS G_CDS: -0.61 Total: 44.41 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -36.48 -6.94 -43.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592447587.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -225.556 kcal (2) G-P(sol) polarization free energy of solvation -36.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -262.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -268.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds